Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Carthamus_20tinctorius_20[genbank_20GCA_5F001633085.1_202016-04-27]
463,906 sequences; 661,937,708 total letters
Query= NC_021858.1
Length=1908524
Score E
Sequences producing significant alignments: (Bits) Value
seq293582 226 3e-53
seq294625 214 2e-49
>seq293582
Length=2029
Score = 226 bits (250), Expect = 3e-53
Identities = 218/276 (79%), Gaps = 4/276 (1%)
Strand=Plus/Plus
Query 869631 CCGAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTT 869690
||||||||||||||||||||||||||||||| ||||| ||||| | | |||| || || |
Sbjct 1595 CCGAGTGGATGTTCTCGATGGCGATCTGGAACCCGTAGAAGGCGCGCGCCTCCGCGACCT 1654
Query 869691 GGACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGA 869750
|||||||||||||||| || ||||| || ||||| ||||||||||| |||||| |
Sbjct 1655 GGACCTCCTTCATGAAGCGTCCGGCAAGATTCTCCAGGACGATGCCGTCCGAGGCGGCAA 1714
Query 869751 AAAAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGAGCGACACCCAGTGGA 869810
| || || |||||||| |||| |||||||||||| ||||| | | |||| |||| |||
Sbjct 1715 AGAAGGCGAGGACGTGGGTGATGAAGTGGCGCTCGCCGTCGGTCAACGACTCCCATTGG- 1773
Query 869811 CGGTG--TCGGCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTTT 869868
|| || | ||| | ||||| || || || || ||||| | |||||| ||||| |||||
Sbjct 1774 CGCTGGTCCTGCGAT-AGGTCGACTTCTTCAGCCGTCCAAAACGAGGCTTCGGCTTTTTT 1832
Query 869869 GTACATCTCCCATACTTGCTGGTAGCGGATAGGGAA 869904
|||||| ||||| | ||| |||| ||| |||||
Sbjct 1833 GTACATTTCCCAGATTTGGGGGTATTTGATTGGGAA 1868
Score = 131 bits (144), Expect = 2e-24
Identities = 114/142 (80%), Gaps = 0/142 (0%)
Strand=Plus/Plus
Query 869180 CCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTTC 869239
|||||||| | ||||| ||||||| || | ||||| ||||| ||||||||||||
Sbjct 1318 CCTTCGTCCCTCGAGATCAATTCGTTGGAGAACGTTAGGCCCGGCATCAGGCCGCGCTTC 1377
Query 869240 TTGAGCCAAAAGATGGCGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAG 869299
|||||||| |||||||||||||| || || ||||| |||||||||||||| ||| |||
Sbjct 1378 TTGAGCCAGAAGATGGCGCAGAAGCTTCCGGAGAAGAAGATGCCCTCGACACAGGCGAAG 1437
Query 869300 CCGATGAGCCGCTCGGCAAAGG 869321
||| || |||||| || ||||
Sbjct 1438 GCGACGATCCGCTCCGCGAAGG 1459
>seq294625
Length=4757
Score = 214 bits (236), Expect = 2e-49
Identities = 215/275 (78%), Gaps = 6/275 (2%)
Strand=Plus/Plus
Query 869633 GAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTTGG 869692
||||| ||||||||||| ||||||||||| ||||| || || | |||| || |||||
Sbjct 4381 GAGTGAATGTTCTCGATTGCGATCTGGAATCCGTAGAAAGCACGAGCCTCGGCGACTTGA 4440
Query 869693 ACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGAAA 869752
||||| |||||||||| ||||| ||||| || ||||| |||||| |||||||||
Sbjct 4441 ACCTCTTTCATGAACCTTCCGGCTAGGTTTTCCAATACGATTCCGTCGGAGGCGGCGAAG 4500
Query 869753 AAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGAGCGACACCCAGTGGACG 869812
|| || |||||||| |||| ||||| || ||| ||||| |||| || |||||||| ||
Sbjct 4501 AAGGCGAGGACGTGAGTGATGAAGTGTCGTTCGCCGTCGGTGAGGGAGTCCCAGTGG-CG 4559
Query 869813 GT-GTCGGCGCTG--AGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTTTG 869869
| ||| | || | || ||||||||||||||||||| ||||| |||||||| |||
Sbjct 4560 TTGGTC--CTGTGACAAATCGACCTCCTCGGCGGTCCAGAAGGAGGCTTCGGCCTTCTTG 4617
Query 869870 TACATCTCCCATACTTGCTGGTAGCGGATAGGGAA 869904
||||| ||||| | || ||||||| ||||||||
Sbjct 4618 TACATTTCCCAAATCTGAGGGTAGCGAATAGGGAA 4652
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 6069068901168202
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |