Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carthamus_20tinctorius_20[genbank_20GCA_5F001633085.1_202016-04-27] 463,906 sequences; 661,937,708 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq293582 226 3e-53 seq294625 214 2e-49 >seq293582 Length=2029 Score = 226 bits (250), Expect = 3e-53 Identities = 218/276 (79%), Gaps = 4/276 (1%) Strand=Plus/Plus Query 869631 CCGAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTT 869690 ||||||||||||||||||||||||||||||| ||||| ||||| | | |||| || || | Sbjct 1595 CCGAGTGGATGTTCTCGATGGCGATCTGGAACCCGTAGAAGGCGCGCGCCTCCGCGACCT 1654 Query 869691 GGACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGA 869750 |||||||||||||||| || ||||| || ||||| ||||||||||| |||||| | Sbjct 1655 GGACCTCCTTCATGAAGCGTCCGGCAAGATTCTCCAGGACGATGCCGTCCGAGGCGGCAA 1714 Query 869751 AAAAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGAGCGACACCCAGTGGA 869810 | || || |||||||| |||| |||||||||||| ||||| | | |||| |||| ||| Sbjct 1715 AGAAGGCGAGGACGTGGGTGATGAAGTGGCGCTCGCCGTCGGTCAACGACTCCCATTGG- 1773 Query 869811 CGGTG--TCGGCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTTT 869868 || || | ||| | ||||| || || || || ||||| | |||||| ||||| ||||| Sbjct 1774 CGCTGGTCCTGCGAT-AGGTCGACTTCTTCAGCCGTCCAAAACGAGGCTTCGGCTTTTTT 1832 Query 869869 GTACATCTCCCATACTTGCTGGTAGCGGATAGGGAA 869904 |||||| ||||| | ||| |||| ||| ||||| Sbjct 1833 GTACATTTCCCAGATTTGGGGGTATTTGATTGGGAA 1868 Score = 131 bits (144), Expect = 2e-24 Identities = 114/142 (80%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 869180 CCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTTC 869239 |||||||| | ||||| ||||||| || | ||||| ||||| |||||||||||| Sbjct 1318 CCTTCGTCCCTCGAGATCAATTCGTTGGAGAACGTTAGGCCCGGCATCAGGCCGCGCTTC 1377 Query 869240 TTGAGCCAAAAGATGGCGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAG 869299 |||||||| |||||||||||||| || || ||||| |||||||||||||| ||| ||| Sbjct 1378 TTGAGCCAGAAGATGGCGCAGAAGCTTCCGGAGAAGAAGATGCCCTCGACACAGGCGAAG 1437 Query 869300 CCGATGAGCCGCTCGGCAAAGG 869321 ||| || |||||| || |||| Sbjct 1438 GCGACGATCCGCTCCGCGAAGG 1459 >seq294625 Length=4757 Score = 214 bits (236), Expect = 2e-49 Identities = 215/275 (78%), Gaps = 6/275 (2%) Strand=Plus/Plus Query 869633 GAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTTGG 869692 ||||| ||||||||||| ||||||||||| ||||| || || | |||| || ||||| Sbjct 4381 GAGTGAATGTTCTCGATTGCGATCTGGAATCCGTAGAAAGCACGAGCCTCGGCGACTTGA 4440 Query 869693 ACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGAAA 869752 ||||| |||||||||| ||||| ||||| || ||||| |||||| ||||||||| Sbjct 4441 ACCTCTTTCATGAACCTTCCGGCTAGGTTTTCCAATACGATTCCGTCGGAGGCGGCGAAG 4500 Query 869753 AAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGAGCGACACCCAGTGGACG 869812 || || |||||||| |||| ||||| || ||| ||||| |||| || |||||||| || Sbjct 4501 AAGGCGAGGACGTGAGTGATGAAGTGTCGTTCGCCGTCGGTGAGGGAGTCCCAGTGG-CG 4559 Query 869813 GT-GTCGGCGCTG--AGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTTTG 869869 | ||| | || | || ||||||||||||||||||| ||||| |||||||| ||| Sbjct 4560 TTGGTC--CTGTGACAAATCGACCTCCTCGGCGGTCCAGAAGGAGGCTTCGGCCTTCTTG 4617 Query 869870 TACATCTCCCATACTTGCTGGTAGCGGATAGGGAA 869904 ||||| ||||| | || ||||||| |||||||| Sbjct 4618 TACATTTCCCAAATCTGAGGGTAGCGAATAGGGAA 4652 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6069068901168202