Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Carthamus_20tinctorius_20[genbank_20GCA_5F001633085.1_202016-04-27]
463,906 sequences; 661,937,708 total letters
Query= NC_021924.1
Length=129052
Score E
Sequences producing significant alignments: (Bits) Value
seq284040 86.0 5e-12
seq156932 86.0 5e-12
>seq284040
Length=2693
Score = 86.0 bits (94), Expect = 5e-12
Identities = 155/227 (68%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332
||||| || || |||||||| ||||||||||||| || || | || ||| |
Sbjct 303 ATGCAGATCTTCGTCAAAACCCTAACCGGCAAAACAATCACTCTGGAGGTCGAGAGCTCC 362
Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392
||||| ||| | | || || |||||| ||||| ||||| | || |||||
Sbjct 363 GATACGATCGACAATGTCAAGGCGAAGATCCAGGACAAGGAAGGAATTCCTCCCGATCAG 422
Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452
|| | || || | || || || ||||||||||| | |||||| | ||||| ||||||
Sbjct 423 CAGCGCCTCATCTTCGCCGGAAAGCAGCTGGAGGACGGCAGAACCCTAGCGGACTACAAC 482
Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGG 110499
|| || || ||||| || | || ||||| || | || || || ||
Sbjct 483 ATCCAGAAGGAATCGACTCTTCATCTGGTGCTACGGCTTCGCGGCGG 529
>seq156932
Length=6713
Score = 86.0 bits (94), Expect = 5e-12
Identities = 144/205 (70%), Gaps = 4/205 (2%)
Strand=Plus/Minus
Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAA-CG-GAGCCTG 110330
||||| || || |||||||| | || || || || || || | ||| || |||| |
Sbjct 3983 ATGCAGATTTTCGTCAAAACCCTCACTGGGAAGACGATCACTTTGGAAGTCGAGAGCTCG 3924
Query 110331 ACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATC 110390
||||| ||| | | || ||| |||||| ||||| ||||| | || || |
Sbjct 3923 --GATACCATCGACAACGTGAAAGCCAAGATTCAAGACAAGGAAGGAATCCCACCAGACC 3866
Query 110391 AACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACA 110450
|||||||||| || | ||| || ||||||||||| |||| | || | ||||||||||
Sbjct 3865 AACAAAGACTCATCTTTGCCGGAAAACAGCTGGAAGATGGGCGGACTCTTGCGGATTACA 3806
Query 110451 ACATTCAAAAAGAATCTACGTTGCA 110475
|||| || || ||||| || ||||
Sbjct 3805 ACATCCAGAAGGAATCGACCCTGCA 3781
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 410507453713658
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |