Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Carthamus_20tinctorius_20[genbank_20GCA_5F001633085.1_202016-04-27]
463,906 sequences; 661,937,708 total letters
Query= NC_022098.1
Length=2473870
Score E
Sequences producing significant alignments: (Bits) Value
seq294625 197 2e-44
seq293582 185 1e-40
seq261149 111 2e-18
>seq294625
Length=4757
Score = 197 bits (218), Expect = 2e-44
Identities = 197/251 (78%), Gaps = 6/251 (2%)
Strand=Plus/Plus
Query 796150 GCCTCGGGTACTTGGACCTCCTTCATGAAGCGGCCGGCCAGGTTCTCAGCCACGATGCCG 796209
||||||| ||||| ||||| |||||||| | ||||| ||||| || ||||| |||
Sbjct 4426 GCCTCGGCGACTTGAACCTCTTTCATGAACCTTCCGGCTAGGTTTTCCAATACGATTCCG 4485
Query 796210 TCGCTGGCGGCGAAAAAGGCGAGGACGTGCTTGATAAAGTGACGCTCGTCGTCGCTGAGC 796269
||| ||||||||| |||||||||||||| |||| ||||| || ||| ||||| ||||
Sbjct 4486 TCGGAGGCGGCGAAGAAGGCGAGGACGTGAGTGATGAAGTGTCGTTCGCCGTCGGTGAGG 4545
Query 796270 GAGACCCAGTGGACCGT--GT-CGGCGCCGAGGTCGACCTCCTCGGCGGTCCAAAAGGAG 796326
||| |||||||| ||| || | | | | | |||||||||||||||||||| ||||||
Sbjct 4546 GAGTCCCAGTGG--CGTTGGTCCTGTGAC-AAATCGACCTCCTCGGCGGTCCAGAAGGAG 4602
Query 796327 GCCTCGGCCTTTTTGTACATCTCCCATATCCGTTGGTAGCGGATGGGGAACAGAACAAAG 796386
|| |||||||| |||||||| ||||| ||| | ||||||| || ||||||| | ||
Sbjct 4603 GCTTCGGCCTTCTTGTACATTTCCCAAATCTGAGGGTAGCGAATAGGGAACATACAGAAT 4662
Query 796387 CGATTGGGGTT 796397
| || ||||||
Sbjct 4663 CTATCGGGGTT 4673
Score = 136 bits (150), Expect = 6e-26
Identities = 227/327 (69%), Gaps = 7/327 (2%)
Strand=Plus/Plus
Query 794341 CCTTCGTCGCGACTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTTC 794400
|||||||| || ||||| |||||| ||| | || ||||| | ||||| |||
Sbjct 4102 CCTTCGTCTCGTGAAATCAACTCGTTGGAGAAGGTCAATCCAGGCATCAAACCGCGTTTC 4161
Query 794401 TTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAG 794460
|| | ||| ||||| || ||||| || |||||||| || || || |||||| || |||
Sbjct 4162 TTCAACCAGAAGATAGCGCAGAAGCTTCCCGAGAAGAATATCCCTTCGACGCAAGCGAAG 4221
Query 794461 CCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCTTTGTTGATCCACTTCATCGCCCAC 794520
| | || || || ||||| | ||| ||| || ||||||| ||||||||||
Sbjct 4222 GCAATGATACGTTCCGCAAACGACTCCGAGCCATC------GATCCACCTCATCGCCCAA 4275
Query 794521 TCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTTCTCG 794580
| ||||| ||| || | || | || || | |||||||| || ||| |||
Sbjct 4276 TTGGCCTTCTTCTGGACGCAAGGAATGGTCTCCACAGCGCGAAACAGCCTCATCTTGTCG 4335
Query 794581 ACCGGGTCCTTGACGTAGGTGTCGATGAGGAGCGAGTAGGTCTCTGAGTGGATGTTTTCG 794640
| |||||||| |||||| |||| ||| | ||| |||| ||||| ||||| |||
Sbjct 4336 TTGGAGTCCTTGATGTAGGTCTCGAGGAGCAAGCTGTACATCTCGGAGTGAATGTTCTCG 4395
Query 794641 ATGGCGATCTGGAAGCCATA-AAAGCA 794666
|| ||||||||||| || || ||||||
Sbjct 4396 ATTGCGATCTGGAATCCGTAGAAAGCA 4422
>seq293582
Length=2029
Score = 185 bits (204), Expect = 1e-40
Identities = 236/324 (73%), Gaps = 6/324 (2%)
Strand=Plus/Plus
Query 794341 CCTTCGTCGCGACTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTTC 794400
|||||||| | ||||||||||||| || ||||| ||||| ||||||||||||
Sbjct 1318 CCTTCGTCCCTCGAGATCAATTCGTTGGAGAACGTTAGGCCCGGCATCAGGCCGCGCTTC 1377
Query 794401 TTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAG 794460
|||||||| |||||||| ||||| || || ||||| |||||||||||||| ||| |||
Sbjct 1378 TTGAGCCAGAAGATGGCGCAGAAGCTTCCGGAGAAGAAGATGCCCTCGACACAGGCGAAG 1437
Query 794461 CCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCTTTGTTGATCCACTTCATCGCCCAC 794520
|||||| |||||| || || | || || || || |||||| | ||||||
Sbjct 1438 GCGACGATCCGCTCCGCGAAGGACTC--GGACC----CGTCGATCCAGCGGAGGGCCCAC 1491
Query 794521 TCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTTCTCG 794580
| ||||| | | |||| | || || | |||| | || || ||| |||||||
Sbjct 1492 TGGGCCTTCCGCTGGATGCAGGGGATGGTCTCCACGGCGTGGAACAGCCGGTTCTTCTCG 1551
Query 794581 ACCGGGTCCTTGACGTAGGTGTCGATGAGGAGCGAGTAGGTCTCTGAGTGGATGTTTTCG 794640
| |||||||| ||||| || | |||||| ||| |||| ||||||||||| |||
Sbjct 1552 TTGGAGTCCTTGATGTAGGACTCCAGGAGGAGGCTGTACATCTCCGAGTGGATGTTCTCG 1611
Query 794641 ATGGCGATCTGGAAGCCATAAAAG 794664
|||||||||||||| || || |||
Sbjct 1612 ATGGCGATCTGGAACCCGTAGAAG 1635
Score = 168 bits (186), Expect = 1e-35
Identities = 177/230 (77%), Gaps = 2/230 (1%)
Strand=Plus/Plus
Query 796150 GCCTCGGGTACTTGGACCTCCTTCATGAAGCGGCCGGCCAGGTTCTCAGCCACGATGCCG 796209
||||| | || |||||||||||||||||||| ||||| || ||||| |||||||||
Sbjct 1642 GCCTCCGCGACCTGGACCTCCTTCATGAAGCGTCCGGCAAGATTCTCCAGGACGATGCCG 1701
Query 796210 TCGCTGGCGGCGAAAAAGGCGAGGACGTGCTTGATAAAGTGACGCTCGTCGTCGCTGAGC 796269
|| |||||| || |||||||||||||| |||| ||||| |||||| ||||| | | |
Sbjct 1702 TCCGAGGCGGCAAAGAAGGCGAGGACGTGGGTGATGAAGTGGCGCTCGCCGTCGGTCAAC 1761
Query 796270 GAGACCCAGTGGACCGTGT-CGGCGCCGAGGTCGACCTCCTCGGCGGTCCAAAAGGAGGC 796328
|| |||| ||| | || | ||| |||||||| || || || |||||||| |||||
Sbjct 1762 GACTCCCATTGGCGCTGGTCCTGCG-ATAGGTCGACTTCTTCAGCCGTCCAAAACGAGGC 1820
Query 796329 CTCGGCCTTTTTGTACATCTCCCATATCCGTTGGTAGCGGATGGGGAACA 796378
||||| ||||||||||| ||||| || | |||| ||| |||||||
Sbjct 1821 TTCGGCTTTTTTGTACATTTCCCAGATTTGGGGGTATTTGATTGGGAACA 1870
>seq261149
Length=6197
Score = 111 bits (122), Expect = 2e-18
Identities = 166/236 (70%), Gaps = 0/236 (0%)
Strand=Plus/Plus
Query 1485473 ACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCATGA 1485532
|||| || || ||||| ||||| || |||||||| ||| |||||| || || | | |
Sbjct 1217 ACTTAGTCACAGCCTTCGTACCTTCAGAGACGGCATGCTTGGCCAACTCACCAGGAAGCA 1276
Query 1485533 TCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGCGCG 1485592
|| | |||||||||||||||||| | || | |||||| |||||| | ||
Sbjct 1277 CGAGCCTCACGGCGGTCTGGATCTCCCTGGACGACAGCGTGTTCTTCTTGTTGTACCTCG 1336
Query 1485593 CCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATGA 1485652
|||| | | || || | ||| |||| |||||||||| || ||||||||||
Sbjct 1337 CCAGCCTGGAAGCTTCCTGGGCGAGCTTCTCGAAGATGTCGTTGATGAAGGAGTTCATGA 1396
Query 1485653 TCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTG 1485708
|| ||| | ||| | ||||| || | ||| || || |||||||| |||||||||
Sbjct 1397 TCCCCATGGCCTTGCTCGAGATCCCGATGTCAGGATGAACCTGCTTCAGCACCTTG 1452
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 7866898602904734
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |