Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carthamus_20tinctorius_20[genbank_20GCA_5F001633085.1_202016-04-27] 463,906 sequences; 661,937,708 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq294625 197 2e-44 seq293582 185 1e-40 seq261149 111 2e-18 >seq294625 Length=4757 Score = 197 bits (218), Expect = 2e-44 Identities = 197/251 (78%), Gaps = 6/251 (2%) Strand=Plus/Plus Query 796150 GCCTCGGGTACTTGGACCTCCTTCATGAAGCGGCCGGCCAGGTTCTCAGCCACGATGCCG 796209 ||||||| ||||| ||||| |||||||| | ||||| ||||| || ||||| ||| Sbjct 4426 GCCTCGGCGACTTGAACCTCTTTCATGAACCTTCCGGCTAGGTTTTCCAATACGATTCCG 4485 Query 796210 TCGCTGGCGGCGAAAAAGGCGAGGACGTGCTTGATAAAGTGACGCTCGTCGTCGCTGAGC 796269 ||| ||||||||| |||||||||||||| |||| ||||| || ||| ||||| |||| Sbjct 4486 TCGGAGGCGGCGAAGAAGGCGAGGACGTGAGTGATGAAGTGTCGTTCGCCGTCGGTGAGG 4545 Query 796270 GAGACCCAGTGGACCGT--GT-CGGCGCCGAGGTCGACCTCCTCGGCGGTCCAAAAGGAG 796326 ||| |||||||| ||| || | | | | | |||||||||||||||||||| |||||| Sbjct 4546 GAGTCCCAGTGG--CGTTGGTCCTGTGAC-AAATCGACCTCCTCGGCGGTCCAGAAGGAG 4602 Query 796327 GCCTCGGCCTTTTTGTACATCTCCCATATCCGTTGGTAGCGGATGGGGAACAGAACAAAG 796386 || |||||||| |||||||| ||||| ||| | ||||||| || ||||||| | || Sbjct 4603 GCTTCGGCCTTCTTGTACATTTCCCAAATCTGAGGGTAGCGAATAGGGAACATACAGAAT 4662 Query 796387 CGATTGGGGTT 796397 | || |||||| Sbjct 4663 CTATCGGGGTT 4673 Score = 136 bits (150), Expect = 6e-26 Identities = 227/327 (69%), Gaps = 7/327 (2%) Strand=Plus/Plus Query 794341 CCTTCGTCGCGACTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTTC 794400 |||||||| || ||||| |||||| ||| | || ||||| | ||||| ||| Sbjct 4102 CCTTCGTCTCGTGAAATCAACTCGTTGGAGAAGGTCAATCCAGGCATCAAACCGCGTTTC 4161 Query 794401 TTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAG 794460 || | ||| ||||| || ||||| || |||||||| || || || |||||| || ||| Sbjct 4162 TTCAACCAGAAGATAGCGCAGAAGCTTCCCGAGAAGAATATCCCTTCGACGCAAGCGAAG 4221 Query 794461 CCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCTTTGTTGATCCACTTCATCGCCCAC 794520 | | || || || ||||| | ||| ||| || ||||||| |||||||||| Sbjct 4222 GCAATGATACGTTCCGCAAACGACTCCGAGCCATC------GATCCACCTCATCGCCCAA 4275 Query 794521 TCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTTCTCG 794580 | ||||| ||| || | || | || || | |||||||| || ||| ||| Sbjct 4276 TTGGCCTTCTTCTGGACGCAAGGAATGGTCTCCACAGCGCGAAACAGCCTCATCTTGTCG 4335 Query 794581 ACCGGGTCCTTGACGTAGGTGTCGATGAGGAGCGAGTAGGTCTCTGAGTGGATGTTTTCG 794640 | |||||||| |||||| |||| ||| | ||| |||| ||||| ||||| ||| Sbjct 4336 TTGGAGTCCTTGATGTAGGTCTCGAGGAGCAAGCTGTACATCTCGGAGTGAATGTTCTCG 4395 Query 794641 ATGGCGATCTGGAAGCCATA-AAAGCA 794666 || ||||||||||| || || |||||| Sbjct 4396 ATTGCGATCTGGAATCCGTAGAAAGCA 4422 >seq293582 Length=2029 Score = 185 bits (204), Expect = 1e-40 Identities = 236/324 (73%), Gaps = 6/324 (2%) Strand=Plus/Plus Query 794341 CCTTCGTCGCGACTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTTC 794400 |||||||| | ||||||||||||| || ||||| ||||| |||||||||||| Sbjct 1318 CCTTCGTCCCTCGAGATCAATTCGTTGGAGAACGTTAGGCCCGGCATCAGGCCGCGCTTC 1377 Query 794401 TTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAG 794460 |||||||| |||||||| ||||| || || ||||| |||||||||||||| ||| ||| Sbjct 1378 TTGAGCCAGAAGATGGCGCAGAAGCTTCCGGAGAAGAAGATGCCCTCGACACAGGCGAAG 1437 Query 794461 CCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCTTTGTTGATCCACTTCATCGCCCAC 794520 |||||| |||||| || || | || || || || |||||| | |||||| Sbjct 1438 GCGACGATCCGCTCCGCGAAGGACTC--GGACC----CGTCGATCCAGCGGAGGGCCCAC 1491 Query 794521 TCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTTCTCG 794580 | ||||| | | |||| | || || | |||| | || || ||| ||||||| Sbjct 1492 TGGGCCTTCCGCTGGATGCAGGGGATGGTCTCCACGGCGTGGAACAGCCGGTTCTTCTCG 1551 Query 794581 ACCGGGTCCTTGACGTAGGTGTCGATGAGGAGCGAGTAGGTCTCTGAGTGGATGTTTTCG 794640 | |||||||| ||||| || | |||||| ||| |||| ||||||||||| ||| Sbjct 1552 TTGGAGTCCTTGATGTAGGACTCCAGGAGGAGGCTGTACATCTCCGAGTGGATGTTCTCG 1611 Query 794641 ATGGCGATCTGGAAGCCATAAAAG 794664 |||||||||||||| || || ||| Sbjct 1612 ATGGCGATCTGGAACCCGTAGAAG 1635 Score = 168 bits (186), Expect = 1e-35 Identities = 177/230 (77%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 796150 GCCTCGGGTACTTGGACCTCCTTCATGAAGCGGCCGGCCAGGTTCTCAGCCACGATGCCG 796209 ||||| | || |||||||||||||||||||| ||||| || ||||| ||||||||| Sbjct 1642 GCCTCCGCGACCTGGACCTCCTTCATGAAGCGTCCGGCAAGATTCTCCAGGACGATGCCG 1701 Query 796210 TCGCTGGCGGCGAAAAAGGCGAGGACGTGCTTGATAAAGTGACGCTCGTCGTCGCTGAGC 796269 || |||||| || |||||||||||||| |||| ||||| |||||| ||||| | | | Sbjct 1702 TCCGAGGCGGCAAAGAAGGCGAGGACGTGGGTGATGAAGTGGCGCTCGCCGTCGGTCAAC 1761 Query 796270 GAGACCCAGTGGACCGTGT-CGGCGCCGAGGTCGACCTCCTCGGCGGTCCAAAAGGAGGC 796328 || |||| ||| | || | ||| |||||||| || || || |||||||| ||||| Sbjct 1762 GACTCCCATTGGCGCTGGTCCTGCG-ATAGGTCGACTTCTTCAGCCGTCCAAAACGAGGC 1820 Query 796329 CTCGGCCTTTTTGTACATCTCCCATATCCGTTGGTAGCGGATGGGGAACA 796378 ||||| ||||||||||| ||||| || | |||| ||| ||||||| Sbjct 1821 TTCGGCTTTTTTGTACATTTCCCAGATTTGGGGGTATTTGATTGGGAACA 1870 >seq261149 Length=6197 Score = 111 bits (122), Expect = 2e-18 Identities = 166/236 (70%), Gaps = 0/236 (0%) Strand=Plus/Plus Query 1485473 ACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCATGA 1485532 |||| || || ||||| ||||| || |||||||| ||| |||||| || || | | | Sbjct 1217 ACTTAGTCACAGCCTTCGTACCTTCAGAGACGGCATGCTTGGCCAACTCACCAGGAAGCA 1276 Query 1485533 TCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGCGCG 1485592 || | |||||||||||||||||| | || | |||||| |||||| | || Sbjct 1277 CGAGCCTCACGGCGGTCTGGATCTCCCTGGACGACAGCGTGTTCTTCTTGTTGTACCTCG 1336 Query 1485593 CCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATGA 1485652 |||| | | || || | ||| |||| |||||||||| || |||||||||| Sbjct 1337 CCAGCCTGGAAGCTTCCTGGGCGAGCTTCTCGAAGATGTCGTTGATGAAGGAGTTCATGA 1396 Query 1485653 TCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTG 1485708 || ||| | ||| | ||||| || | ||| || || |||||||| ||||||||| Sbjct 1397 TCCCCATGGCCTTGCTCGAGATCCCGATGTCAGGATGAACCTGCTTCAGCACCTTG 1452 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7866898602904734