Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carthamus_20tinctorius_20[genbank_20GCA_5F001633085.1_202016-04-27] 463,906 sequences; 661,937,708 total letters Query= NC_023177.1 Length=124688 Score E Sequences producing significant alignments: (Bits) Value seq228143 93.3 3e-14 seq284040 89.7 4e-13 seq156932 89.7 4e-13 >seq228143 Length=6931 Score = 93.3 bits (102), Expect = 3e-14 Identities = 148/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614 ||||| |||||||| ||||| || || || || ||||| || | ||| || ||| Sbjct 2641 ATGCAGATTTTTGTGAAAACCTTGACCGGAAAGACCATCACATTAGAAGTTGAAAGCTC- 2699 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 ||| || | | | | || || ||||| || ||||||||| | || || || Sbjct 2700 CGACACCATTGACAACGTCAAGGCCAAGATCCAAGACAAAGAAGGCATCCCTCCAGACCA 2759 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 |||||||||||||| || || || |||||||| |||| | ||| | || |||||||| Sbjct 2760 GCAGAGACTTATTTTCGCCGGAAAGCAGCTGGAAGACGGCCGAACCCTTGCCGACTACAA 2819 Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGT 107764 ||| || |||||||| || | ||| |||| Sbjct 2820 CATCCAGAAGGAGTCGACCCTTCACTTGGT 2849 >seq284040 Length=2693 Score = 89.7 bits (98), Expect = 4e-13 Identities = 140/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614 ||||| || || |||||||| |||| ||||| ||||| || | || ||| ||| Sbjct 531 ATGCAGATCTTCGTCAAAACCCTAACCGGCAAGACCATCACTCTGGAGGTCGAGAGCTC- 589 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 |||||| ||| | || || ||||| || || ||||| | || |||||| Sbjct 590 CGATACGATCGATAACGTCAAGGCGAAGATCCAGGACAAGGAAGGAATTCCTCCGGATCA 649 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 |||| | || || | || || || ||||||||||||| || ||| | ||||||||||| Sbjct 650 GCAGCGTCTCATCTTCGCCGGGAAGCAGCTGGAGGACGGCAGAACCCTAGCGGACTACAA 709 Query 107735 CATTCAAAAGGAGTCTAC 107752 ||| || |||||||| || Sbjct 710 CATCCAGAAGGAGTCGAC 727 Score = 86.0 bits (94), Expect = 5e-12 Identities = 147/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614 ||||| || || |||||||| |||| |||||||| || || | || ||| ||| Sbjct 303 ATGCAGATCTTCGTCAAAACCCTAACCGGCAAAACAATCACTCTGGAGGTCGAGAGCTC- 361 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 |||||| ||| | | || || ||||| || || ||||| | || ||||| Sbjct 362 CGATACGATCGACAATGTCAAGGCGAAGATCCAGGACAAGGAAGGAATTCCTCCCGATCA 421 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 |||| | || || | || || || ||||||||||||| || ||| | ||||||||||| Sbjct 422 GCAGCGCCTCATCTTCGCCGGAAAGCAGCTGGAGGACGGCAGAACCCTAGCGGACTACAA 481 Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGTG 107765 ||| || ||||| || || | || ||||| Sbjct 482 CATCCAGAAGGAATCGACTCTTCATCTGGTG 512 >seq156932 Length=6713 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| || || || || || | || ||||| ||||| || |||| ||| | | Sbjct 4439 ATGCAGATATTCGTTAAGACCCTCACTGGCAAGACCATCACTCTCGAGGTCGAGAGTTCC 4380 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 ||||| | | | | || || ||||| || || ||||| | || |||||| Sbjct 4379 GATACAATTGACAACGTCAAGGCCAAGATCCAAGACAAGGAAGGGATTCCTCCAGATCAG 4320 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||||| || || | ||| ||||||||||| ||||||| | ||| | || ||||||||| Sbjct 4319 CAGAGGCTGATCTTTGCCGGTAAACAGCTCGAGGACGGCCGAACTCTAGCCGACTACAAC 4260 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGT 107764 || ||||||||||| || | ||| |||| Sbjct 4259 ATCCAAAAGGAGTCCACCCTCCACTTGGT 4231 Score = 84.2 bits (92), Expect = 2e-11 Identities = 146/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614 |||||||| || ||||| || || || ||||||||||| || | ||| || ||| Sbjct 4211 ATGCAAATCTTCGTCAAGACCTTGACCGGCAAAACCATCACTCTTGAAGTAGAAAGCTCT 4152 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 || || ||| | | || || ||||| || || |||||| | ||| || || Sbjct 4151 -GACACCATCGACAACGTCAAGGCCAAGATCCAAGACAAGGAAGGCATCCCCCCAGACCA 4093 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 |||| || | || | || |||||||| || ||||||| | || | ||||||||||| Sbjct 4092 GCAGCGATTGATCTTCGCCGGTAAACAACTCGAGGACGGCCGTACTCTTGCGGACTACAA 4033 Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGT 107764 ||| || |||||||| || | ||| |||| Sbjct 4032 CATCCAGAAGGAGTCAACCCTCCACTTGGT 4003 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396621608659234