Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Carthamus_20tinctorius_20[genbank_20GCA_5F001633085.1_202016-04-27]
463,906 sequences; 661,937,708 total letters
Query= NC_023177.1
Length=124688
Score E
Sequences producing significant alignments: (Bits) Value
seq228143 93.3 3e-14
seq284040 89.7 4e-13
seq156932 89.7 4e-13
>seq228143
Length=6931
Score = 93.3 bits (102), Expect = 3e-14
Identities = 148/210 (70%), Gaps = 2/210 (1%)
Strand=Plus/Plus
Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614
||||| |||||||| ||||| || || || || ||||| || | ||| || |||
Sbjct 2641 ATGCAGATTTTTGTGAAAACCTTGACCGGAAAGACCATCACATTAGAAGTTGAAAGCTC- 2699
Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674
||| || | | | | || || ||||| || ||||||||| | || || ||
Sbjct 2700 CGACACCATTGACAACGTCAAGGCCAAGATCCAAGACAAAGAAGGCATCCCTCCAGACCA 2759
Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734
|||||||||||||| || || || |||||||| |||| | ||| | || ||||||||
Sbjct 2760 GCAGAGACTTATTTTCGCCGGAAAGCAGCTGGAAGACGGCCGAACCCTTGCCGACTACAA 2819
Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGT 107764
||| || |||||||| || | ||| ||||
Sbjct 2820 CATCCAGAAGGAGTCGACCCTTCACTTGGT 2849
>seq284040
Length=2693
Score = 89.7 bits (98), Expect = 4e-13
Identities = 140/198 (71%), Gaps = 2/198 (1%)
Strand=Plus/Plus
Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614
||||| || || |||||||| |||| ||||| ||||| || | || ||| |||
Sbjct 531 ATGCAGATCTTCGTCAAAACCCTAACCGGCAAGACCATCACTCTGGAGGTCGAGAGCTC- 589
Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674
|||||| ||| | || || ||||| || || ||||| | || ||||||
Sbjct 590 CGATACGATCGATAACGTCAAGGCGAAGATCCAGGACAAGGAAGGAATTCCTCCGGATCA 649
Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734
|||| | || || | || || || ||||||||||||| || ||| | |||||||||||
Sbjct 650 GCAGCGTCTCATCTTCGCCGGGAAGCAGCTGGAGGACGGCAGAACCCTAGCGGACTACAA 709
Query 107735 CATTCAAAAGGAGTCTAC 107752
||| || |||||||| ||
Sbjct 710 CATCCAGAAGGAGTCGAC 727
Score = 86.0 bits (94), Expect = 5e-12
Identities = 147/211 (70%), Gaps = 2/211 (1%)
Strand=Plus/Plus
Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614
||||| || || |||||||| |||| |||||||| || || | || ||| |||
Sbjct 303 ATGCAGATCTTCGTCAAAACCCTAACCGGCAAAACAATCACTCTGGAGGTCGAGAGCTC- 361
Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674
|||||| ||| | | || || ||||| || || ||||| | || |||||
Sbjct 362 CGATACGATCGACAATGTCAAGGCGAAGATCCAGGACAAGGAAGGAATTCCTCCCGATCA 421
Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734
|||| | || || | || || || ||||||||||||| || ||| | |||||||||||
Sbjct 422 GCAGCGCCTCATCTTCGCCGGAAAGCAGCTGGAGGACGGCAGAACCCTAGCGGACTACAA 481
Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGTG 107765
||| || ||||| || || | || |||||
Sbjct 482 CATCCAGAAGGAATCGACTCTTCATCTGGTG 512
>seq156932
Length=6713
Score = 89.7 bits (98), Expect = 4e-13
Identities = 145/209 (69%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615
||||| || || || || || | || ||||| ||||| || |||| ||| | |
Sbjct 4439 ATGCAGATATTCGTTAAGACCCTCACTGGCAAGACCATCACTCTCGAGGTCGAGAGTTCC 4380
Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675
||||| | | | | || || ||||| || || ||||| | || ||||||
Sbjct 4379 GATACAATTGACAACGTCAAGGCCAAGATCCAAGACAAGGAAGGGATTCCTCCAGATCAG 4320
Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735
||||| || || | ||| ||||||||||| ||||||| | ||| | || |||||||||
Sbjct 4319 CAGAGGCTGATCTTTGCCGGTAAACAGCTCGAGGACGGCCGAACTCTAGCCGACTACAAC 4260
Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGT 107764
|| ||||||||||| || | ||| ||||
Sbjct 4259 ATCCAAAAGGAGTCCACCCTCCACTTGGT 4231
Score = 84.2 bits (92), Expect = 2e-11
Identities = 146/210 (70%), Gaps = 2/210 (1%)
Strand=Plus/Minus
Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614
|||||||| || ||||| || || || ||||||||||| || | ||| || |||
Sbjct 4211 ATGCAAATCTTCGTCAAGACCTTGACCGGCAAAACCATCACTCTTGAAGTAGAAAGCTCT 4152
Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674
|| || ||| | | || || ||||| || || |||||| | ||| || ||
Sbjct 4151 -GACACCATCGACAACGTCAAGGCCAAGATCCAAGACAAGGAAGGCATCCCCCCAGACCA 4093
Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734
|||| || | || | || |||||||| || ||||||| | || | |||||||||||
Sbjct 4092 GCAGCGATTGATCTTCGCCGGTAAACAACTCGAGGACGGCCGTACTCTTGCGGACTACAA 4033
Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGT 107764
||| || |||||||| || | ||| ||||
Sbjct 4032 CATCCAGAAGGAGTCAACCCTCCACTTGGT 4003
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 396621608659234
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |