Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Carthamus_20tinctorius_20[genbank_20GCA_5F001633085.1_202016-04-27]
463,906 sequences; 661,937,708 total letters
Query= NC_023442.1
Length=120420
Score E
Sequences producing significant alignments: (Bits) Value
seq25275 140 2e-28
seq228143 123 2e-23
seq156932 123 2e-23
seq284040 109 4e-19
seq145598 95.1 9e-15
>seq25275
Length=8276
Score = 140 bits (154), Expect = 2e-28
Identities = 167/227 (74%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619
|| || || ||||| || ||||| ||||| ||||| || || || ||||| ||||| ||
Sbjct 5245 CCGCCTCTTAAACGAAGAACCAAGTGAAGGGTGGACTCCTTCTGTATGTTGTAATCGGCC 5186
Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679
| |||||| || ||||| || ||||| ||| | ||||| || ||||| || || |||
Sbjct 5185 AAAGTGCGACCGTCCTCGAGCTGCTTGCCGGCAAAGATCAACCTCTGCTGGTCTGGGGGA 5126
Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739
|||||||| |||||||| | ||| || || | || | |||||| || || |||
Sbjct 5125 ATACCCTCCTTGTCTTGGATTTTCGCCTTCACGTTATCGATAGTGTCCGAGCTCTCGACT 5066
Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786
|| | || || ||||| || |||| |||||| ||||| || |||||
Sbjct 5065 TCCAACGTGATGGTTTTCCCTGTTAGGGTTTTGACAAAGATTTGCAT 5019
Score = 131 bits (144), Expect = 1e-25
Identities = 165/227 (73%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619
|| || ||||| || |||||||| ||||| || ||||| || |||||||| || || |||
Sbjct 5473 CCACCTCTCAATCGAAGCACCAAGTGAAGGGTTGATTCCTTCTGAATGTTGTAGTCTGCA 5414
Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679
| ||| || ||| || || || ||||| ||| | ||||||||||| || || || ||
Sbjct 5413 AGGGTACGGCCATCCTCAAGCTGCTTGCCGGCAAAGATCAATCTTTGTTGGTCTGGTGGG 5354
Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739
|| |||||||| ||||| | ||| || || | || | ||||| || || |||
Sbjct 5353 ATTCCCTCTTTATCTTGGATTTTCGCCTTCACGTTGTCGATGGTGTCGGAGCTCTCAACT 5294
Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786
|| || || || || || || || || || || ||||| ||||||||
Sbjct 5293 TCCAGTGTGATGGTCTTTCCGGTCAAAGTCTTCACAAAGATCTGCAT 5247
Score = 127 bits (140), Expect = 2e-24
Identities = 160/217 (74%), Gaps = 2/217 (1%)
Strand=Plus/Minus
Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630
||| || ||||||||||| || || || || || |||||||||||||||| || |
Sbjct 6146 ACGAAGAACCAAATGAAGGGTAGACTCCTTCTGGATGTTATAATCCGCAAGAGTCCTTCC 6087
Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690
||| || || || || |||||| | |||| || ||||||||||| || || ||||| ||
Sbjct 6086 ATCCTCAAGCTGCTTCCCAGCAAAAATCAGCCTCTGCTGATCCGGTGGGATCCCCTCCTT 6027
Query 29691 GTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTA 29749
||| || ||| || | ||| ||| | || | ||||| ||| || || || || || |
Sbjct 6026 GTCCTG-AATCTTCGCTTTCACATTGTCGATCGTGTCCGAACTCTCCACCTCCAGCGTGA 5968
Query 29750 TAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786
| || || || || || || |||||||| ||||||||
Sbjct 5967 TGGTCTTCCCTGTCAACGTCTTAACAAAGATCTGCAT 5931
Score = 122 bits (134), Expect = 7e-23
Identities = 166/229 (72%), Gaps = 2/229 (1%)
Strand=Plus/Minus
Query 29559 TCCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGC 29618
||| || ||||| || || ||||||||||| || ||||| || |||||||| || || ||
Sbjct 5702 TCCACCTCTCAATCGAAGAACCAAATGAAGGGTCGATTCCTTCTGAATGTTGTAGTCAGC 5643
Query 29619 AATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGG 29678
|| || ||| ||| ||||| || || || ||| | |||| || ||||| || || ||
Sbjct 5642 AAGCGTACGACCATCCTCGAGCTGCTTACCCGCAAAGATCAGCCTCTGCTGGTCTGGTGG 5583
Query 29679 AATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTA 29737
|||||||| || ||||| ||| || | || || | || | ||||| || || |
Sbjct 5582 GATACCCTCCTTATCTTG-AATCTTAGCCTTCACGTTGTCGATGGTGTCGGAGCTCTCAA 5524
Query 29738 CTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786
| || ||||| || || || || || || || || ||||| ||||||||
Sbjct 5523 CCTCGAGAGTGATGGTCTTTCCGGTCAATGTCTTCACAAAGATCTGCAT 5475
Score = 89.7 bits (98), Expect = 4e-13
Identities = 156/227 (69%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619
||||| | | ||| || || | || || ||||| || || || || || || || ||
Sbjct 4789 CCTCCACGGAGACGTAGGACGAGGTGGAGTGTGGACTCCTTCTGGATATTGTAGTCGGCC 4730
Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679
| || || || ||||| || ||||| ||| | |||| ||||||||||| || |||
Sbjct 4729 AAAGTTCGGCCGTCCTCGAGCTGCTTGCCGGCAAAGATCAGCCTTTGCTGATCTGGGGGA 4670
Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739
|| || || ||||| || | ||| ||||| | || | || || ||| || ||
Sbjct 4669 ATCCCTTCCTTGTCCTGGATTTTGGCCTTGACGTTGTCGATTGTATCGGAACTCTCGACC 4610
Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786
|| || || || || || ||||||| || ||||| || ||||||||
Sbjct 4609 TCTAGGGTGATGGTCTTTCCAGTTAGTGTCTTAACGAAGATCTGCAT 4563
>seq228143
Length=6931
Score = 123 bits (136), Expect = 2e-23
Identities = 157/216 (73%), Gaps = 0/216 (0%)
Strand=Plus/Minus
Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630
||| ||||| | ||| || || || ||||| |||||||||||||| |||| || |
Sbjct 3540 ACGAAGCACAAGATGCAGGGTAGACTCTTTCTGAATGTTATAATCAGCAAGTGTCCTCCC 3481
Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690
||| || | || || || ||| | ||||| || ||||||||||| || || ||||| ||
Sbjct 3480 ATCTTCCAACTGCTTCCCTGCAAAGATCAACCTCTGCTGATCCGGTGGGATCCCCTCCTT 3421
Query 29691 GTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTAT 29750
|||||| | ||| || ||| | || | || || || ||| || || ||||| ||
Sbjct 3420 GTCTTGGATCTTTGCCTTCACATTATCAATCGTATCCGAGCTTTCCACCTCCAGAGTGAT 3361
Query 29751 AGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786
|| || ||||| || || ||||| |||||||||||
Sbjct 3360 CGTCTTTCCAGTCAACGTCTTAACGAATATCTGCAT 3325
Score = 96.9 bits (106), Expect = 3e-15
Identities = 151/216 (70%), Gaps = 0/216 (0%)
Strand=Plus/Minus
Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630
||| || ||||| ||||| || || || || || ||||| || || |||| ||| ||
Sbjct 2856 ACGGAGGACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGCAAGGGTTCGGCC 2797
Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690
|| || || || || || || | || | ||| ||||| || || || || || |||||
Sbjct 2796 GTCTTCCAGCTGCTTTCCGGCGAAAATAAGTCTCTGCTGGTCTGGAGGGATGCCTTCTTT 2737
Query 29691 GTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTAT 29750
|||||| | || ||||| | || | ||||| || ||| ||||| | || ||
Sbjct 2736 GTCTTGGATCTTGGCCTTGACGTTGTCAATGGTGTCGGAGCTTTCAACTTCTAATGTGAT 2677
Query 29751 AGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786
|| || || || |||||||| ||||| ||||||||
Sbjct 2676 GGTCTTTCCGGTCAAGGTTTTCACAAAAATCTGCAT 2641
>seq156932
Length=6713
Score = 123 bits (136), Expect = 2e-23
Identities = 157/216 (73%), Gaps = 0/216 (0%)
Strand=Plus/Plus
Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630
||| || ||||| || || || || || || || ||||| || ||||||| || ||
Sbjct 3996 ACGGAGGACCAAGTGGAGGGTTGACTCCTTCTGGATGTTGTAGTCCGCAAGAGTACGGCC 4055
Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690
|| ||||||||||| || || | ||||||| ||||| || || || || || || ||
Sbjct 4056 GTCCTCGAGTTGTTTACCGGCGAAGATCAATCGCTGCTGGTCTGGGGGGATGCCTTCCTT 4115
Query 29691 GTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTAT 29750
|||||| | || ||||| | || | |||||||| ||||||||||||||| ||
Sbjct 4116 GTCTTGGATCTTGGCCTTGACGTTGTCGATGGTGTCAGAGCTTTCTACTTCAAGAGTGAT 4175
Query 29751 AGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786
|||||||| || ||||| || || || || |||||
Sbjct 4176 GGTTTTGCCGGTCAAGGTCTTGACGAAGATTTGCAT 4211
Score = 120 bits (132), Expect = 2e-22
Identities = 165/228 (72%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619
||||||||||| | |||||| | ||| || || ||||| || || ||||| |||||||||
Sbjct 3757 CCTCCCCTCAACCTCAGCACAAGATGCAGGGTCGATTCCTTCTGGATGTTGTAATCCGCA 3816
Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679
| || || ||| || || ||||| || ||| | || | |||||| || || || ||
Sbjct 3817 AGAGTCCGCCCATCTTCCAGCTGTTTTCCGGCAAAGATGAGTCTTTGTTGGTCTGGTGGG 3876
Query 29680 ATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTAC 29738
|| || || |||||||| ||| || | ||| || | || | || || || || ||
Sbjct 3877 ATTCCTTCCTTGTCTTG-AATCTTGGCTTTCACGTTGTCGATGGTATCCGAGCTCTCGAC 3935
Query 29739 TTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786
||| | ||| || || || ||||| | |||||| || || ||||||||
Sbjct 3936 TTCCAAAGTGATCGTCTTCCCAGTGAGGGTTTTGACGAAAATCTGCAT 3983
Score = 114 bits (126), Expect = 1e-20
Identities = 155/216 (72%), Gaps = 0/216 (0%)
Strand=Plus/Plus
Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630
||| || ||||| || || ||||| || ||||| ||||| || || || | || ||
Sbjct 4224 ACGGAGGACCAAGTGGAGGGTGGACTCCTTTTGGATGTTGTAGTCGGCTAGAGTTCGGCC 4283
Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690
|| ||||| ||||| || ||| | |||| || |||||||| || ||||| || || ||
Sbjct 4284 GTCCTCGAGCTGTTTACCGGCAAAGATCAGCCTCTGCTGATCTGGAGGAATCCCTTCCTT 4343
Query 29691 GTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTAT 29750
|||||| | || ||||| | || | || || ||| || || || ||||| ||
Sbjct 4344 GTCTTGGATCTTGGCCTTGACGTTGTCAATTGTATCGGAACTCTCGACCTCGAGAGTGAT 4403
Query 29751 AGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786
|| |||||||| | ||| ||||| |||||||||||
Sbjct 4404 GGTCTTGCCAGTGAGGGTCTTAACGAATATCTGCAT 4439
>seq284040
Length=2693
Score = 109 bits (120), Expect = 4e-19
Identities = 156/217 (72%), Gaps = 2/217 (1%)
Strand=Plus/Minus
Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630
||| ||||| | || || ||||| || || || ||||| |||||||| | || ||
Sbjct 1202 ACGAAGCACAAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAATCCGCCAGAGTCCGGCC 1143
Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690
||| || || || || || ||| ||||||| || ||||| ||||| ||||| ||||||||
Sbjct 1142 ATCTTCCAGCTGCTTTCCGGCAAATATCAACCTCTGCTGGTCCGGTGGAATCCCCTCTTT 1083
Query 29691 GTCTTGTAATTTTTGT-TTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTA 29749
|| || ||| || | |||||| | || | || || || || || || ||||| |
Sbjct 1082 ATCCTG-AATCTTGGCCTTGACATTATCGATCGTATCGGAGCTCTCCACCTCCAGAGTAA 1024
Query 29750 TAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786
| || || || || || || || || |||||||||||
Sbjct 1023 TCGTCTTCCCGGTCAACGTCTTCACGAATATCTGCAT 987
Score = 98.7 bits (108), Expect = 8e-16
Identities = 160/228 (70%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619
||||||||||| ||||| |||| ||| | |||||| || || || ||||| ||||| ||
Sbjct 985 CCTCCCCTCAACCGCAGAACCAGATGCAACGTGGACTCCTTCTGGATGTTGTAATCGGCC 926
Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679
| || | || ||||| || ||||| || | ||||| | ||||| ||||| ||
Sbjct 925 AAAGTCCTTCCGTCTTCGAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGGTCCGGTGGG 866
Query 29680 ATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTAC 29738
|| || || ||||| || ||| || | || || | || | ||||| || ||| ||
Sbjct 865 ATTCCTTCCTTGTCCTG-AATCTTCGCCTTCACGTTATCGATCGTGTCGGAGCTTTCCAC 807
Query 29739 TTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786
|| | || || ||||| || || || || || || || ||||||||
Sbjct 806 CTCCAACGTGATCGTTTTTCCGGTCAACGTCTTCACGAAGATCTGCAT 759
>seq145598
Length=10865
Score = 95.1 bits (104), Expect = 9e-15
Identities = 102/135 (76%), Gaps = 0/135 (0%)
Strand=Plus/Plus
Query 29559 TCCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGC 29618
||||||||||| | || || | ||| || || |||||||| || ||||| || || ||
Sbjct 9509 TCCTCCCCTCAGTCTTAGAACAAGATGGAGTGTTGATTCTTTCTGGATGTTGTAGTCAGC 9568
Query 29619 AATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGG 29678
|| || || ||| || | ||| ||||||||| | ||||| || || ||||| || ||
Sbjct 9569 AAGTGTTCGTCCATCCTCTAATTGCTTGCCAGCAAAAATCAACCTCTGTTGATCTGGAGG 9628
Query 29679 AATACCCTCTTTGTC 29693
||||||||||||||
Sbjct 9629 GATACCCTCTTTGTC 9643
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 383041226740746
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