Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carthamus_20tinctorius_20[genbank_20GCA_5F001633085.1_202016-04-27] 463,906 sequences; 661,937,708 total letters Query= NC_023848.1 Length=163023 Score E Sequences producing significant alignments: (Bits) Value seq303752 98.7 1e-15 >seq303752 Length=2320 Score = 98.7 bits (108), Expect = 1e-15 Identities = 169/243 (70%), Gaps = 2/243 (1%) Strand=Plus/Minus Query 22052 GAAACGATGTATTGCGGATTCACGGGGCAACGTATCGAGAGCGA-GATCTTCATAGGACC 22110 || |||||||| ||| |||||| | ||| | || |||| ||||||| | || || Sbjct 1635 GAGACGATGTACAACGGTCACACGGGCCGACGGCT-GACCGCGATGATCTTCCTTGGGCC 1577 Query 22111 CACATATTACCACAGACTCAAACATATGGTCAAGGACAAGATGCACGCCCGATCCCACGG 22170 ||| || ||||| ||| | ||||||||||| | |||||||| || ||||| | || Sbjct 1576 CACGTACTACCAGAGATTGAAACATATGGTGGACGACAAGATACATTCCCGAGGACGGGG 1517 Query 22171 CCAGGTGACGACGTTGCACCGGCAGCCGAACTGTGGGCGTGCTCAGGGCGGCGGGCTGCG 22230 || ||| || || |||||||||| | || || ||| | ||| ||||| || Sbjct 1516 CCCGGTTCAGATCCTGACCCGGCAGCCGGCCGAGGGACGATCTCGAGACGGTGGGCTCCG 1457 Query 22231 GTTCGGAGAGATGGAGAAGGACTGCATTCTGGTGCACGGGGCAACACAGTTCTTGAACGA 22290 ||||||||||||||| ||| ||||| | | ||||| || | || || | || || Sbjct 1456 GTTCGGAGAGATGGAACGGGATTGCATGATTGCCCACGGTGCCGCTCATTTTCTTAAGGA 1397 Query 22291 ACG 22293 ||| Sbjct 1396 ACG 1394 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 518521248336080