Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carthamus_20tinctorius_20[genbank_20GCA_5F001633085.1_202016-04-27] 463,906 sequences; 661,937,708 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq156932 174 3e-38 seq228143 159 7e-34 seq25275 150 4e-31 seq276382 138 2e-27 seq284040 136 8e-27 >seq156932 Length=6713 Score = 174 bits (192), Expect = 3e-38 Identities = 177/228 (78%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 ||||| ||||| | ||| || | ||||| || ||||| ||||| || || ||||| | Sbjct 3757 CCTCCCCTCAACCTCAGCACAAGATGCAGGGTCGATTCCTTCTGGATGTTGTAATCCGCA 3816 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 ||| | | || ||||| || |||||||| |||||||| ||||||||||| ||||| || Sbjct 3817 AGAGTCCGCCCATCTTCCAGCTGTTTTCCGGCAAAGATGAGTCTTTGTTGGTCTGGTGGG 3876 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGT-TCTAC 82762 ||||||||||| ||||||||||| ||||| || || || || ||||| || | || || Sbjct 3877 ATTCCTTCCTTGTCTTGAATCTTGGCTTTCACGTTGTCGATGGTATC-CGAGCTCTCGAC 3935 Query 82763 TTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 ||||||||| |||||||| || || | || || || || |||||||| Sbjct 3936 TTCCAAAGTGATCGTCTTCCCAGTGAGGGTTTTGACGAAAATCTGCAT 3983 Score = 141 bits (156), Expect = 2e-28 Identities = 161/216 (75%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 82595 ACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACC 82654 ||| || || ||||| || || || || || || || || || || | |||| ||| || Sbjct 4224 ACGGAGGACCAAGTGGAGGGTGGACTCCTTTTGGATGTTGTAGTCGGCTAGAGTTCGGCC 4283 Query 82655 GTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTT 82714 ||| || || ||||| || |||||||| || || || ||||||||||| || |||||||| Sbjct 4284 GTCCTCGAGCTGTTTACCGGCAAAGATCAGCCTCTGCTGATCTGGAGGAATCCCTTCCTT 4343 Query 82715 ATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTAT 82774 ||||| ||||| || || || || ||||| ||||| | || || || | ||| || Sbjct 4344 GTCTTGGATCTTGGCCTTGACGTTGTCAATTGTATCGGAACTCTCGACCTCGAGAGTGAT 4403 Query 82775 CGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||||||| || | ||||| || ||||||||||| Sbjct 4404 GGTCTTGCCAGTGAGGGTCTTAACGAATATCTGCAT 4439 Score = 138 bits (152), Expect = 2e-27 Identities = 169/228 (74%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 || || | || ||| ||||| | ||| ||||| || || ||||| ||||| ||||| | Sbjct 3529 CCACCACGCAGACGAAGAACAAGGTGAAGAGTCGACTCCTTCTGGATATTGTAATCCGCA 3588 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 ||| | | ||| || || | || || || || || || | || || || ||||| || Sbjct 3589 AGAGTACGACCATCCTCCAACTGCTTCCCTGCGAATATCAACCTCTGCTGGTCTGGTGGA 3648 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGT-TCTAC 82762 || ||||||||||| ||||||||||| || ||||| ||||| ||||| || | || || Sbjct 3649 ATCCCTTCCTTATCCTGAATCTTTGCCTTCACATTGTCAATGGTATC-CGAGCTCTCCAC 3707 Query 82763 TTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 ||||| || |||||||| || || || ||||| || || |||||||| Sbjct 3708 CTCCAAGGTGATCGTCTTCCCGGTTAAAGTCTTGACGAAAATCTGCAT 3755 >seq228143 Length=6931 Score = 159 bits (176), Expect = 7e-34 Identities = 165/216 (76%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 82595 ACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACC 82654 ||| || || | ||||| ||||| |||||||| || |||||||||| || | || || Sbjct 3540 ACGAAGCACAAGATGCAGGGTAGACTCTTTCTGAATGTTATAATCAGCAAGTGTCCTCCC 3481 Query 82655 GTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTT 82714 ||||| | || || || |||||||| | || || ||||| || || || || ||||| Sbjct 3480 ATCTTCCAACTGCTTCCCTGCAAAGATCAACCTCTGCTGATCCGGTGGGATCCCCTCCTT 3421 Query 82715 ATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTAT 82774 ||||| |||||||| || ||||| ||||||||||| ||| || |||| ||| || Sbjct 3420 GTCTTGGATCTTTGCCTTCACATTATCAATCGTATCCGAGCTTTCCACCTCCAGAGTGAT 3361 Query 82775 CGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||||| || ||||||||||| || ||||||||||| Sbjct 3360 CGTCTTTCCAGTCAACGTCTTAACGAATATCTGCAT 3325 Score = 147 bits (162), Expect = 4e-30 Identities = 170/229 (74%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || | | ||| || || | || || || || || ||||| || || || |||| Sbjct 3097 TACCACCACGAAGACGGAGGACCAGATGGAGGGTCGACTCCTTCTGGATGTTGTAGTCAG 3038 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 || ||| || ||||| || ||||| ||||||||||| | || ||||| ||||| | Sbjct 3037 CAAGGGTTCGGCCATCTTCCAGCTGTTTCCCAGCAAAGATCAACCTCTGTTGGTCTGGTG 2978 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || |||||||||||||| ||||| ||||| ||||| ||||| || || | || | Sbjct 2977 GGATGCCTTCCTTATCTTGGATCTTAGCTTTCACATTATCAATGGTGTCTGAACTCTCAA 2918 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 | |||||||| || ||||| || ||||| ||||| || || |||||||| Sbjct 2917 CCTCCAAAGTGATGGTCTTTCCGGTCAAGGTCTTAACGAAAATCTGCAT 2869 Score = 131 bits (144), Expect = 3e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 ||||| || | || || || | || || || || || ||||| || || ||||||| Sbjct 3323 CCTCCCCTTAGCCGAAGCACAAGATGAAGGGTCGACTCCTTCTGGATGTTGTAATCAGCC 3264 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 | | | || ||||| | ||| || ||||||||||| | || || || || || || Sbjct 3263 AACGTACGCCCATCTTCCAATTGCTTCCCAGCAAAGATCAACCTCTGCTGGTCCGGTGGG 3204 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || ||||||||||| || ||||| || || ||||| ||||| || || | || || Sbjct 3203 ATGCCTTCCTTATCCTGGATCTTAGCCTTCACATTGTCAATGGTGTCCGAACTCTCGACC 3144 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||||||| || ||||| || ||||||||||| ||||| |||||||| Sbjct 3143 TCCAAAGTGATGGTCTTTCCAGTCAACGTCTTAACAAAAATCTGCAT 3097 >seq25275 Length=8276 Score = 150 bits (166), Expect = 4e-31 Identities = 163/216 (75%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 82595 ACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACC 82654 ||| ||||| || || || ||||| || ||||| || |||||||| | ||| | || || Sbjct 6146 ACGAAGAACCAAATGAAGGGTAGACTCCTTCTGGATGTTATAATCCGCAAGAGTCCTTCC 6087 Query 82655 GTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTT 82714 || || || || || |||||||| || || || || ||||| || || || || ||||| Sbjct 6086 ATCCTCAAGCTGCTTCCCAGCAAAAATCAGCCTCTGCTGATCCGGTGGGATCCCCTCCTT 6027 Query 82715 ATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTAT 82774 || |||||||| ||||| ||||| || ||||| || | || || |||| || || Sbjct 6026 GTCCTGAATCTTCGCTTTCACATTGTCGATCGTGTCCGAACTCTCCACCTCCAGCGTGAT 5967 Query 82775 CGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 ||||| |||||||||||||| ||||| |||||||| Sbjct 5966 GGTCTTCCCTGTCAACGTCTTAACAAAGATCTGCAT 5931 Score = 138 bits (152), Expect = 2e-27 Identities = 169/228 (74%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 || |||||||| || ||||| || || || || ||||| ||||| || || || |||| Sbjct 5701 CCACCTCTCAATCGAAGAACCAAATGAAGGGTCGATTCCTTCTGAATGTTGTAGTCAGCA 5642 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 || | | ||| || || || || || || |||||||| || || || || ||||| || Sbjct 5641 AGCGTACGACCATCCTCGAGCTGCTTACCCGCAAAGATCAGCCTCTGCTGGTCTGGTGGG 5582 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGT-TCTAC 82762 || || ||||||||||||||||| || || || || || || || || || | || || Sbjct 5581 ATACCCTCCTTATCTTGAATCTTAGCCTTCACGTTGTCGATGGTGTC-GGAGCTCTCAAC 5523 Query 82763 TTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || | ||| || ||||| || ||||| ||||| ||||| |||||||| Sbjct 5522 CTCGAGAGTGATGGTCTTTCCGGTCAATGTCTTCACAAAGATCTGCAT 5475 >seq276382 Length=2823 Score = 138 bits (152), Expect = 2e-27 Identities = 161/216 (75%), Gaps = 1/216 (0%) Strand=Plus/Minus Query 82595 ACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACC 82654 ||| || || | ||||| || || || ||||| || |||||||||| || || || || Sbjct 2363 ACGAAGCACAAGATGCAG-GTGGACTCCTTCTGAATGTTATAATCAGCAAGTATCCTCCC 2305 Query 82655 GTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTT 82714 ||||| | || || | ||| ||| | || |||||||| | || || || ||||| Sbjct 2304 ATCTTCCAACTGCTTCCGTACAACGATCACCCTCTGTTGATCCAGTGGGATCCCCTCCTT 2245 Query 82715 ATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTAT 82774 |||||| ||||| || || ||||| ||||||||||| ||| || |||| ||| || Sbjct 2244 ATCTTGGATCTTAGCCTTCACATTATCAATCGTATCCGAGCTTTCCACCTCCAGAGTGAT 2185 Query 82775 CGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||||| || ||||||||||| || ||||||||||| Sbjct 2184 CGTCTTTCCAGTCAACGTCTTAACGAATATCTGCAT 2149 Score = 113 bits (124), Expect = 9e-20 Identities = 134/182 (74%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 82608 TGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGT 82667 || || || || || ||||| || || || || | || ||| || |||| || || Sbjct 1895 TGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGCAAGGGTTCGGCCATCTTGAAGCTGC 1836 Query 82668 TTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTT 82727 ||||| ||||| || | || | ||| ||||| || || || ||||||||||| |||||| Sbjct 1835 TTTCCGGCAAATATCAACCTCTATTGGTCTGGTGGGATGCCCTCCTTATCTTGGATCTTT 1776 Query 82728 GCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTC 82787 ||||| ||||| ||||| || || | || || ||||||||||||||||| || ||| Sbjct 1775 GCTTTCACATTGTCAATGGTGTCTGAACTCTCGACCTCCAAAGTTATCGTCTTTCCGGTC 1716 Query 82788 AA 82789 || Sbjct 1715 AA 1714 Score = 89.7 bits (98), Expect = 1e-12 Identities = 136/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 82617 GATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCA 82676 || || ||||| || || ||||||| | | | || ||||| | ||| || || || Sbjct 2114 GACTCCTTCTGGATGTTGTAATCAGCCAACGTACGGCCATCTTCCAATTGCTTCCCGACA 2055 Query 82677 AAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTTACA 82736 ||||| | || | | || || || || ||||||||||| || ||| | || || || Sbjct 2054 AAGATCAACCTCTTCTAGTCCGGTGGGATGCCTTCCTTATCCTGGATCATAGCCTTCACG 1995 Query 82737 TTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTT 82796 || |||| || || | || || |||||||| || ||||| || ||||| ||||| Sbjct 1994 TTGTCAACGGTGTCCGAACTCTCAACCTCCAAAGTGATGGTCTTTCCAGTCAAAGTCTTA 1935 Query 82797 ACAAATATCTGCAT 82810 ||||| |||||||| Sbjct 1934 ACAAAAATCTGCAT 1921 >seq284040 Length=2693 Score = 136 bits (150), Expect = 8e-27 Identities = 162/217 (75%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 82595 ACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACC 82654 ||| || || | |||||| || || || ||||| || || ||||| | ||| | | || Sbjct 1202 ACGAAGCACAAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAATCCGCCAGAGTCCGGCC 1143 Query 82655 GTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTT 82714 ||||| || || ||||| ||||| || | || || || || || || || || || || Sbjct 1142 ATCTTCCAGCTGCTTTCCGGCAAATATCAACCTCTGCTGGTCCGGTGGAATCCCCTCTTT 1083 Query 82715 ATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGT-TCTACTTCCAAAGTTA 82773 ||| |||||||| || || ||||| || |||||||| || | || || |||| ||| | Sbjct 1082 ATCCTGAATCTTGGCCTTGACATTATCGATCGTATCGG-AGCTCTCCACCTCCAGAGTAA 1024 Query 82774 TCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 ||||||| || ||||||||||| || ||||||||||| Sbjct 1023 TCGTCTTCCCGGTCAACGTCTTCACGAATATCTGCAT 987 Score = 134 bits (148), Expect = 3e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 ||||| ||||| |||||||| | |||| || || || ||||| || || ||||| | Sbjct 985 CCTCCCCTCAACCGCAGAACCAGATGCAACGTGGACTCCTTCTGGATGTTGTAATCGGCC 926 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 | | | || |||||||| || || || || || ||||| | | || || || || || Sbjct 925 AAAGTCCTTCCGTCTTCGAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGGTCCGGTGGG 866 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 ||||||||||| || |||||||| || || || || || ||||| || ||| || Sbjct 865 ATTCCTTCCTTGTCCTGAATCTTCGCCTTCACGTTATCGATCGTGTCGGAGCTTTCCACC 806 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 ||||| || ||||| || || ||||||||||| || || |||||||| Sbjct 805 TCCAACGTGATCGTTTTTCCGGTCAACGTCTTCACGAAGATCTGCAT 759 Score = 127 bits (140), Expect = 4e-24 Identities = 152/204 (75%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 82608 TGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGT 82667 || ||||| ||||| ||||| || || || || | ||| |||| ||||| || || || Sbjct 505 TGAAGAGTCGATTCCTTCTGGATGTTGTAGTCCGCTAGGGTTCTGCCGTCCTCCAGCTGC 446 Query 82668 TTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTT 82727 ||||| || ||||| || | || ||||| ||||| ||||||||||| || || ||||| Sbjct 445 TTTCCGGCGAAGATGAGGCGCTGCTGATCGGGAGGAATTCCTTCCTTGTCCTGGATCTTC 386 Query 82728 GCTTTTACATTTTCAATCGTATCATTAGGT-TCTACTTCCAAAGTTATCGTCTTGCCTGT 82786 || || ||||| || |||||||| || | || || |||| ||| || || ||||| || Sbjct 385 GCCTTGACATTGTCGATCGTATC-GGAGCTCTCGACCTCCAGAGTGATTGTTTTGCCGGT 327 Query 82787 CAACGTCTTTACAAATATCTGCAT 82810 | || || || || |||||||| Sbjct 326 TAGGGTTTTGACGAAGATCTGCAT 303 Score = 125 bits (138), Expect = 1e-23 Identities = 159/216 (74%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 82596 CGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCG 82655 || ||||| | ||| ||||| || || ||||| || || || || | ||| |||| ||| Sbjct 745 CGTAGAACGAGGTGGAGAGTCGACTCCTTCTGGATGTTGTAGTCCGCTAGGGTTCTGCCG 686 Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715 || || || || || || || ||||| || | || ||||| ||||| ||||||||||| Sbjct 685 TCCTCCAGCTGCTTCCCGGCGAAGATGAGACGCTGCTGATCCGGAGGAATTCCTTCCTTG 626 Query 82716 TCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGT-TCTACTTCCAAAGTTAT 82774 || || ||||| || || || || || |||||||| || | || || |||| ||| || Sbjct 625 TCCTGGATCTTCGCCTTGACGTTATCGATCGTATC-GGAGCTCTCGACCTCCAGAGTGAT 567 Query 82775 CGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||||||| || | || || || || |||||||| Sbjct 566 GGTCTTGCCGGTTAGGGTTTTGACGAAGATCTGCAT 531 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 975991419784134