Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Carthamus_20tinctorius_20[genbank_20GCA_5F001633085.1_202016-04-27]
463,906 sequences; 661,937,708 total letters
Query= NC_025257.1
Length=102759
Score E
Sequences producing significant alignments: (Bits) Value
seq25275 120 2e-22
seq284040 107 1e-18
seq259261 93.3 3e-14
seq228143 87.8 1e-12
>seq25275
Length=8276
Score = 120 bits (132), Expect = 2e-22
Identities = 166/230 (72%), Gaps = 2/230 (1%)
Strand=Plus/Minus
Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581
||| ||||| ||||| | ||||| || || ||| ||| || ||||||||||||||||
Sbjct 5246 ACCGCCTCTTAAACGAAGAACCAAGTGAAGGGTGGACTCCTTCTGTATGTTGTAATCGGC 5187
Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641
| ||||| |||| || | || || |||||||| ||||| | |||||| ||| | ||
Sbjct 5186 CAAAGTGCGACCGTCCTCGAGCTGCTTGCCGGCAAAGATCAACCTCTGCTGGTCTGGGGG 5127
Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCACGGTGTCGCTTGAT-TCCA 33700
| ||| || ||||| |||||| |||| || | ||||| | | | || |
Sbjct 5126 AATACCCTCCTTGTCTTGGATTTTCGCCTTCACGTTATCGATAGTGTC-CGAGCTCTCGA 5068
Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750
| || | |||||| ||||| ||||||| ||||| |||||||| ||||||
Sbjct 5067 CTTCCAACGTGATGGTTTTCCCTGTTAGGGTTTTGACAAAGATTTGCATA 5018
Score = 105 bits (116), Expect = 4e-18
Identities = 165/232 (71%), Gaps = 8/232 (3%)
Strand=Plus/Minus
Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581
||| ||||| ||||| | ||||| || || || ||| || || ||||| || ||||
Sbjct 5018 ACCGCCTCTTAAACGAAGAACCAAGTGAAGGGTTGACTCCTTCTGGATGTTATAGTCGGC 4959
Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641
|| || || |||| || | || ||||||||||| |||| | |||||| ||| | ||
Sbjct 4958 AAGAGTACGGCCGTCCTCGAGCTGCTTTCCGGCAAAGATCAGTCTCTGCTGGTCTGGGGG 4899
Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTC---GCTTGATT 33697
| |||||| ||||| |||||| ||| || | ||| | |||||| ||| ||
Sbjct 4898 AATACCTTCCTTGTCTTGAATTTTAGCCTTC-ACGTTGTCAATGGTGTCAGAGCT---TT 4843
Query 33698 CCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749
| || || | |||||| ||||| || || | ||||| |||||||| |||||
Sbjct 4842 CGACCTCCAGCGTGATGGTTTTGCCGGTGAGGGTTTTGACAAAGATTTGCAT 4791
Score = 93.3 bits (102), Expect = 3e-14
Identities = 159/228 (70%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582
||||| | | ||| | |||||||| || || ||| || || ||||| ||||| |
Sbjct 6157 CCACCGCGAAGACGAAGAACCAAATGAAGGGTAGACTCCTTCTGGATGTTATAATCCGCA 6098
Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642
|| || | | | || || | || || || |||||||||| | ||||||||| | ||
Sbjct 6097 AGAGTCCTTCCATCCTCAAGCTGCTTCCCAGCAAAAATCAGCCTCTGCTGATCCGGTGGG 6038
Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701
| || || ||||| ||| ||| ||||| ||| ||| | ||||| |||||
Sbjct 6037 ATCCCCTCCTTGTCCTGAATCTTCGCTTTCA-CATTGTCGATCGTGTCCGAACTCTCCAC 5979
Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749
|| | |||||| || || ||||| ||||| || ||||||||||||||
Sbjct 5978 CTCCAGCGTGATGGTCTTCCCTGTCAACGTCTTAACAAAGATCTGCAT 5931
Score = 82.4 bits (90), Expect = 5e-11
Identities = 157/229 (69%), Gaps = 2/229 (1%)
Strand=Plus/Minus
Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582
||||||||||| || | |||||| || || || || || || |||||||| || |
Sbjct 5473 CCACCTCTCAATCGAAGCACCAAGTGAAGGGTTGATTCCTTCTGAATGTTGTAGTCTGCA 5414
Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642
|| || || | || || | || || |||||||| ||||| | || || ||| | ||
Sbjct 5413 AGGGTACGGCCATCCTCAAGCTGCTTGCCGGCAAAGATCAATCTTTGTTGGTCTGGTGGG 5354
Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701
| || ||||| || |||||| ||| || | ||| | ||||||| || ||
Sbjct 5353 ATTCCCTCTTTATCTTGGATTTTCGCCTTC-ACGTTGTCGATGGTGTCGGAGCTCTCAAC 5295
Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750
|| | ||||| || || || || || || || |||||||||||||||
Sbjct 5294 TTCCAGTGTGATGGTCTTTCCGGTCAAAGTCTTCACAAAGATCTGCATA 5246
>seq284040
Length=2693
Score = 107 bits (118), Expect = 1e-18
Identities = 160/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582
|| || ||||| || | |||| ||| | ||| ||| || || |||||||||||||
Sbjct 985 CCTCCCCTCAACCGCAGAACCAGATGCAACGTGGACTCCTTCTGGATGTTGTAATCGGCC 926
Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642
| || | | |||| || | || || ||||| || |||||||||||||| || | ||
Sbjct 925 AAAGTCCTTCCGTCTTCGAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGGTCCGGTGGG 866
Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCACGGTGTCGCTTGATTCCACG 33702
| ||||| ||||| ||| ||| |||| || | |||||| ||||||
Sbjct 865 ATTCCTTCCTTGTCCTGAATCTTCGCCTTCACGTTATCGATCGTGTCGGAGCTTTCCACC 806
Query 33703 TCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749
|| | |||||||||||| || || ||||| || || |||||||||||
Sbjct 805 TCCAACGTGATCGTTTTTCCGGTCAACGTCTTCACGAAGATCTGCAT 759
>seq259261
Length=7884
Score = 93.3 bits (102), Expect = 3e-14
Identities = 160/230 (70%), Gaps = 2/230 (1%)
Strand=Plus/Minus
Query 33521 CACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGG 33580
||||||| | | || | ||||| || || ||| ||| || || |||||||| ||||
Sbjct 2604 CACCACCGCGGAGGCGGAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGG 2545
Query 33581 AGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCG 33640
|| || | |||| || | ||||| ||||| || || | |||||||| || |||
Sbjct 2544 CTAGGGTCCTGCCGTCCTCGAGCTGTTTCCCGGCGAAGATGAGGCGCTGCTGGTCCGGCG 2485
Query 33641 GCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCC 33699
| | ||||| ||||| || || |||| | | ||| | |||||| |||||
Sbjct 2484 GGATGCCTTCCTTGTCCTGGATCTTGGCCTTCA-CGTTGTCGATCGTGTCGGAGGATTCG 2426
Query 33700 ACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749
|| || | ||||||||| || || |||| ||||| || |||||||||||
Sbjct 2425 ACCTCCAACGTGATCGTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCAT 2376
>seq228143
Length=6931
Score = 87.8 bits (96), Expect = 1e-12
Identities = 159/230 (69%), Gaps = 2/230 (1%)
Strand=Plus/Minus
Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581
|||||| | | ||| | ||||| || || || ||| || || |||||||| ||||
Sbjct 2868 ACCACCACGAAGACGGAGGACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGC 2809
Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641
|| || || |||| |||| || |||||||| ||||| | | |||||| ||| | ||
Sbjct 2808 AAGGGTTCGGCCGTCTTCCAGCTGCTTTCCGGCGAAAATAAGTCTCTGCTGGTCTGGAGG 2749
Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700
| ||||||||||| || || | | || | ||| | ||||||| ||| |
Sbjct 2748 GATGCCTTCTTTGTCTTGGATCTT-GGCCTTGACGTTGTCAATGGTGTCGGAGCTTTCAA 2690
Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750
| || | ||||| || || || || || ||||| ||||| |||||||||
Sbjct 2689 CTTCTAATGTGATGGTCTTTCCGGTCAAGGTTTTCACAAAAATCTGCATA 2640
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 326845555451520
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |