Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carthamus_20tinctorius_20[genbank_20GCA_5F001633085.1_202016-04-27] 463,906 sequences; 661,937,708 total letters Query= NC_025456.1 Length=46547 Score E Sequences producing significant alignments: (Bits) Value seq107965 361 2e-95 seq169634 208 2e-49 seq300680 205 3e-48 seq250312 188 2e-43 seq10884 143 8e-30 seq8631 143 8e-30 seq36621 111 5e-20 seq264332 96.9 1e-15 seq449122 91.5 4e-14 seq138223 91.5 4e-14 >seq107965 Length=6474 Score = 361 bits (400), Expect = 2e-95 Identities = 450/609 (74%), Gaps = 8/609 (1%) Strand=Plus/Plus Query 19667 CTTCTTTATGGAAACAACATCATATCGGGAGCCGTCGTTCCGAG--CAGCAATGCCATCG 19724 || |||||||||||||| || || | || || | |||| | | ||| || || | Sbjct 5870 CTGCTTTATGGAAACAATATTATTTTAGGTACCATTATTCCTATTTCTGCA--GCTATAG 5927 Query 19725 GACTACACTTCTACCCAATTTGGGAAGCTAGTTCACTTGATGAATGGCTCTACAACGGGG 19784 | | || || |||||||| |||||||| | || ||||||||||| | ||||| || | Sbjct 5928 GTTTGCATTTTTACCCAATATGGGAAGCAACATCTGTTGATGAATGGTTATACAATGGTG 5987 Query 19785 GACCGTTCCAACTTGTGGTCTTCCACTTCCTCATTGGCATCTATGCTTACATGGGACGAG 19844 | || | |||| | || | |||||| | |||| | | ||||||||| || | Sbjct 5988 GTCCTTATGAACTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTG 6047 Query 19845 AGTGGGAACTTAGCTATCGACTAGGAATGAGGCCTTGGATTTGTGTTGCCTACTCTGCTC 19904 ||||||||||||| | ||| || || ||| | ||||||| |||||| || || |||| Sbjct 6048 AGTGGGAACTTAGTTTTCGTCTGGGTATGCGAACTTGGATGGTTGTTGCATATTCAGCTC 6107 Query 19905 CGGTTGCAGCCGCCTCTGCGGTCTTTCTCG-TCTACCCGTTTGGTCAGGGTAGCTTCTCC 19963 | |||||||| || || || ||||| | ||||||| ||||||| || ||||| || Sbjct 6108 CTGTTGCAGCTGCGAGTGTTGT-TTTCTTGATCTACCCAATTGGTCAAGGAAGCTTTTCT 6166 Query 19964 GATGCTATGCCTTTGGGTATCTCGGGTACGTTCAACTACATGTTGGTATTCCAAGCCGAA 20023 |||| ||||||| | || || || ||||| ||||||| |||| | |||||||| || || Sbjct 6167 GATGGTATGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAG 6226 Query 20024 CATAACATTCTCATGCACCCGTTCCACATGCTTGGTGTGGCTGGTGTATTCGGTGGGTCA 20083 || |||||||| |||||||| || |||||||| ||||| ||||||||| |||| || || Sbjct 6227 CACAACATTCTTATGCACCCATTTCACATGCTAGGTGTAGCTGGTGTAATCGGCGGCTCC 6286 Query 20084 CTATTCAGTGCGATGCACGGTTCGCTTGTTACGTCCTCGCTTG-TGCGTGAGACTACTGA 20142 ||||||||||| ||||| ||||| |||| || || | ||| | | || || || || Sbjct 6287 CTATTCAGTGCTATGCATGGTTC-CTTGGTAACCTCTTGTTTGATCAGGGAAACCACAGA 6345 Query 20143 ACAGGAAAGTCAGAACTATGGTTACAAGTTTGGGCAAGAAGAAGAGACCTATAACATCGT 20202 | | || | || | ||||||| ||||| | |||||| || || ||||| ||||| Sbjct 6346 AAATAAATCTGCTAATGAAGGTTACAGATTTGGTCTAGAAGATGAAACTTATAATATCGT 6405 Query 20203 AGCCGCTCATGGTTACTTTGGACGTTTGATCTTCCAATACGCTTCTTTCAACAATAGCCG 20262 ||||| ||||||||| ||||| || |||||||||||||| ||| ||||||||| || Sbjct 6406 AGCCGTTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCTAGTTTCAACAACTCTCG 6465 Query 20263 TTCTCTACA 20271 |||| |||| Sbjct 6466 TTCTTTACA 6474 >seq169634 Length=720 Score = 208 bits (230), Expect = 2e-49 Identities = 323/454 (71%), Gaps = 8/454 (2%) Strand=Plus/Minus Query 19526 ACCAACAACCGTCTTTATGTTGGGTGGTTTGGAACACTGATGATTCCGTGTCTCCTTGCA 19585 ||| | ||||||||||| |||| |||||||| ||||||| || | || ||| Sbjct 456 ACCGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATCCC-TACCTTATTGAC 398 Query 19586 GCCACCATCTGC-TTCATTATTGCATTCATTGCGGCTCCACCAGTTGACATTGATGGCAT 19644 || | |||| || ||||| || |||||||| ||||| ||||| || |||||||| || Sbjct 397 CGCAACTTCTGTATTTATTATCGCTTTCATTGCTGCTCCTCCAGTGGATATTGATGGTAT 338 Query 19645 CCGCGAACCCGTATCCGGTAGCCTTCTTTATGGAAACAACATCATATCGGGAGCCGTCGT 19704 || ||||| || | || || |||||||||||| || || || || | | | | Sbjct 337 TCGTGAACCTGTTTATGGATCTCTAAGTTATGGAAACAATATTATTTCAGGTGTCATTAT 278 Query 19705 TCCGAG--CAGCAATGCCATCGGACTACACTTCTACCCAATTTGGGAAGCTAGTTCACTT 19762 ||| | | ||| || || || | || || |||||||| |||||||| || || Sbjct 277 TCCTACTTCTGCA--GCTATAGGTTTGCATTTTTACCCAATATGGGAAGCAGCATCCGTT 220 Query 19763 GATGAATGGCTCTACAACGGGGGACCGTTCCAACTTGTGGTCTTCCACTTCCTCATTGGC 19822 ||||||||| | ||||| || || || | |||| | || | |||||| | |||| Sbjct 219 GATGAATGGTTATACAATGGTGGTCCTTATGAACTAATTGTTCTACACTTCTTACTTGGT 160 Query 19823 ATCTATGCTTACATGGGACGAGAGTGGGAACTTAGCTATCGACTAGGAATGAGGCCTTGG 19882 | | ||||||||| || |||||||||||||| | || || || ||| | |||||| Sbjct 159 GTAGCTTGTTACATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGACCTTGG 100 Query 19883 ATTTGTGTTGCCTACTCTGCTCCGGTTGCAGCCGCCTCTGCGGTCTTTCTCG-TCTACCC 19941 ||| |||||| || || ||| | |||||||| || |||| || ||||| | ||||||| Sbjct 99 ATTGTTGTTGCATATTCAGCTTCTGTTGCAGCTGCAACTGCTGT-TTTCTTGATCTACCC 41 Query 19942 GTTTGGTCAGGGTAGCTTCTCCGATGCTATGCCT 19975 ||||||| || ||||| || |||| ||||||| Sbjct 40 AATTGGTCAAGGAAGCTTTTCTGATGGTATGCCT 7 >seq300680 Length=3790 Score = 205 bits (226), Expect = 3e-48 Identities = 240/322 (75%), Gaps = 2/322 (1%) Strand=Plus/Minus Query 19955 AGCTTCTCCGATGCTATGCCTTTGGGTATCTCGGGTACGTTCAACTACATGTTGGTATTC 20014 ||||| || |||| ||||||| | || || || ||||| ||||||| |||| | |||||| Sbjct 673 AGCTTTTCTGATGGTATGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATTGTATTC 614 Query 20015 CAAGCCGAACATAACATTCTCATGCACCCGTTCCACATGCTTGGTGTGGCTGGTGTATTC 20074 || | || || |||||||| |||||||| || |||||||| | || ||||||||| || Sbjct 613 CAGGTTGAGCACAACATTCTTATGCACCCATTTCACATGCTAAGCGTAGCTGGTGTACTC 554 Query 20075 GGTGGGTCACTATTCAGTGCGATGCACGGTTCGCTTGTTACGTCCTCGCTTGTGCGTGAG 20134 | | || ||||| | ||| ||||| ||||| | || || || | | || | || Sbjct 553 GTCAGCTCCCTATTTAATGCTATGCATGGTTCCTTGGTAACCTC-TAGTTTAATCAGGAA 495 Query 20135 ACTACTGAACAGGAAAGTCAGAACTATGGTTACAAGTTTGGGCAAGAAGAAGAGACCT-A 20193 || | ||| | ||| | || | |||||||| || || ||||||||||| | || | Sbjct 494 ACCAGAGAAAATGAATTTGCTAATGAAGGTTACAAATTCGGTCAAGAAGAAGAAAACTTA 435 Query 20194 TAACATCGTAGCCGCTCATGGTTACTTTGGACGTTTGATCTTCCAATACGCTTCTTTCAA 20253 ||| |||||||||||||||||||| ||||| || ||| ||||||| || ||| |||||| Sbjct 434 TAATATCGTAGCCGCTCATGGTTATTTTGGCCGATTGGTCTTCCAGTATGCTAGTTTCAA 375 Query 20254 CAATAGCCGTTCTCTACACTTC 20275 ||| |||||| |||| ||| Sbjct 374 CAACTCTCGTTCTTTACATTTC 353 >seq250312 Length=8481 Score = 188 bits (208), Expect = 2e-43 Identities = 325/466 (70%), Gaps = 17/466 (4%) Strand=Plus/Plus Query 20021 GAACATAACATTCTCATGCACCCGTTCCACATGCTTGGTGTGGCTGGTGTATTCGGTGGG 20080 || || |||||||| | |||| | || |||||||| || || ||||||||| | || | Sbjct 1574 GAGCACAACATTCTTAGGCACTCATTTCACATGCTAGGCGTAGCTGGTGTAATTGGCAGC 1633 Query 20081 TCACTATTCAGTGCGATGCACGGTTCGCTTGTTACGTCCTCGCTTGTGC-GTGAGACTAC 20139 || ||||||||||| |||| ||||| |||| || ||| | ||| | | || || || Sbjct 1634 TCCCTATTCAGTGCTATGCGTGGTTC-CTTGGTAACCCCTAGTTTGATCAGGGAAACCAC 1692 Query 20140 TGAACAGGAAAGTCAG--AACTATGGTTACAAGTTTGGGCAAGAAGAAGAGACCTATAAC 20197 | | ||| | || || | ||||| | || || ||||||| ||| | || || Sbjct 1693 AAAGAATGAA--TAAGCTAATGAAGGTTATATATTCGGTCAAGAAGGAGAAAATTAGAAT 1750 Query 20198 ATCGTAGCCGCTCATGGTTACTTTGGACGTTTGATCTTCCAATACGCTTCTTTCAACAAT 20257 || ||||||||||||||||| ||||| || |||||||||| | | ||| ||||||||| Sbjct 1751 ATTGTAGCCGCTCATGGTTATTTTGGTCGATTGATCTTCCGACATGCTAGTTTCAACAAC 1810 Query 20258 AGCCGTTCTCTACACTTCTTCCTTGCTGCCTGGCCGGTGGTAGGGATTTGGTTCGCTGCC 20317 |||| | |||| |||||||| ||| | ||||| || ||||| || Sbjct 1811 TCACGTTTTTTACATTTCTTCCTAGCTACTTGGCC---------TATCTGGTTTATTGTG 1861 Query 20318 TTGGGCGTTTCTACAATGGCGTTTAATCTGAACGGTTTCAACTTTAACCAGTCCCTTCTC 20377 || || | || ||||| | || || || ||||| | || | || || | || Sbjct 1862 TTAGGTATCAGCACTATGGCTTACAACCTAAATGGTTTTAGTTTCCATCAATCTGTAGTC 1921 Query 20378 GACA-ACAATGGTCGTGTCATTGATACTTGGGCTGACATTCTCAATCGTGCTAATCTCGG 20436 |||| |||| ||| ||| ||| ||||||||||||| || | || ||||||| || || Sbjct 1922 GACAGTCAAT-GTCATGTAATTAATACTTGGGCTGATATCATTAACTGTGCTAACCTTGG 1980 Query 20437 GTTTGAGGTGATGCATGAACGGAATGCTCATAACTTCCCACTTGAC 20482 | || || ||| ||||| | ||||||||||| ||||| || ||| Sbjct 1981 TATGGAAGTTATGTATGAATGTAATGCTCATAATTTCCCTCTAGAC 2026 >seq10884 Length=5042 Score = 143 bits (158), Expect = 8e-30 Identities = 123/152 (81%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 19955 AGCTTCTCCGATGCTATGCCTTTGGGTATCTCGGGTACGTTCAACTACATGTTGGTATTC 20014 ||||| || |||| ||||||| | || || || ||||| ||||||| |||| | |||||| Sbjct 3786 AGCTTTTCTGATGGTATGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATTGTATTC 3845 Query 20015 CAAGCCGAACATAACATTCTCATGCACCCGTTCCACATGCTTGGTGTGGCTGGTGTATTC 20074 || || || || |||||||| |||||||| || |||||||| || || |||||||||||| Sbjct 3846 CAGGCTGAGCACAACATTCTTATGCACCCATTTCACATGCTAGGCGTAGCTGGTGTATTC 3905 Query 20075 GGTGGGTCACTATTCAGTGCGATGCACGGTTC 20106 || || || ||||||| ||| || || ||||| Sbjct 3906 GGCGGCTCCCTATTCATTGCTATACATGGTTC 3937 >seq8631 Length=609 Score = 143 bits (158), Expect = 8e-30 Identities = 130/161 (81%), Gaps = 2/161 (1%) Strand=Plus/Minus Query 19955 AGCTTCTCCGATGCTATGCCTTTGGGTATCTCGGGTACGTTCAACTACATGTTGGTATTC 20014 ||||| | |||| ||||||| | || || || ||||| ||||||| |||| | |||||| Sbjct 338 AGCTTTTTTGATGGTATGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATTGTATTC 279 Query 20015 CAAGCCGAACATAACATTCTCATGCACCCGTTCCACATGCTTGGTGTGGCTGGTGTATTC 20074 || ||||| || |||||||| |||||||| || |||||||| | || |||||||||||| Sbjct 278 CAGGCCGAGCACAACATTCTTATGCACCCATTTCACATGCTAGACGTAGCTGGTGTATTC 219 Query 20075 GGTGGGTCACT-ATTCAGTGCGATGCACGGTTCGCTTGTTA 20114 || || || || ||||||||| ||||| ||||| |||| || Sbjct 218 GGCGGCTCCCTAATTCAGTGCTATGCATGGTTC-CTTGGTA 179 >seq36621 Length=13842 Score = 111 bits (122), Expect = 5e-20 Identities = 209/303 (69%), Gaps = 7/303 (2%) Strand=Plus/Minus Query 20183 GAAGAGACCTATAACATCGTAGCCGCTCATGGTTACTTTGGACGTTTGATCTTCCAATAC 20242 ||||| || ||||| |||||| ||||||||||| ||||| | ||||||||| |||| Sbjct 7968 GAAGAAACTTATAATATCGTATATGCTCATGGTTA-TTTGGCTGATTGATCTTCTAATAT 7910 Query 20243 GCTTCTTTCAACAATAGCCGTTCTCTACACTTCTTCCTTGCTGCCTGGCCGGTGGTAGGG 20302 ||| ||||||| | | || | || | || || || ||||| ||||| || | || Sbjct 7909 GCTAGTTTCAACGACTCTCATTTTATATATTTTTTTCTAGCTGCTTGGCCTGTTTTTGGT 7850 Query 20303 ATTTGGTTCGCTGCCTTGGGCGTTTCTA-CA--ATGGCGTTTAATCTGAACGGTTTCAAC 20359 || |||||| |||| ||||| | ||| || ||||| || || || || |||| || Sbjct 7849 ATATGGTTCACTGCGTTGGG---TACTAGCATTATGGCTTTCAACCTAAATGGTTGAAAT 7793 Query 20360 TTTAACCAGTCCCTTCTCGACAACAATGGTCGTGTCATTGATACTTGGGCTGACATTCTC 20419 ||||| | | | || | | | ||||| || ||||||| | ||| || Sbjct 7792 CGAAACCAATTGGTAGTTGATAGTCACAGCCGTGTAATGAATACTTGAGGTGATATCAGT 7733 Query 20420 AATCGTGCTAATCTCGGGTTTGAGGTGATGCATGAACGGAATGCTCATAACTTCCCACTT 20479 || | |||||| || | | | || ||||||||||| ||||||||||| | ||| || Sbjct 7732 AACCATGCTAACCTTGTTATGAATGTTATGCATGAACGTAATGCTCATAATTCCCCTCTA 7673 Query 20480 GAC 20482 ||| Sbjct 7672 GAC 7670 >seq264332 Length=996 Score = 96.9 bits (106), Expect = 1e-15 Identities = 83/103 (81%), Gaps = 0/103 (0%) Strand=Plus/Minus Query 20220 TTGGACGTTTGATCTTCCAATACGCTTCTTTCAACAATAGCCGTTCTCTACACTTCTTCC 20279 |||| || |||||||||||||| ||| ||||||||| |||||| |||| ||||||| Sbjct 274 TTGGCCGATTGATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCTTTACATTTCTTCC 215 Query 20280 TTGCTGCCTGGCCGGTGGTAGGGATTTGGTTCGCTGCCTTGGG 20322 | ||||| ||||| || ||||| || |||||| |||| || || Sbjct 214 TAGCTGCTTGGCCTGTAGTAGGCATCTGGTTCACTGCGTTAGG 172 >seq449122 Length=870 Score = 91.5 bits (100), Expect = 4e-14 Identities = 68/80 (85%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 20164 TTACAAGTTTGGGCAAGAAGAAGAGACCTATAACATCGTAGCCGCTCATGGTTACTTTGG 20223 ||||| || || ||||||||||| || || || |||||||||||||||||||| ||||| Sbjct 176 TTACAGATTCGGTCAAGAAGAAGAAACTTACAATATCGTAGCCGCTCATGGTTATTTTGG 235 Query 20224 ACGTTTGATCTTCCAATACG 20243 | |||||||||||||||| Sbjct 236 CCAATTGATCTTCCAATACG 255 >seq138223 Length=10580 Score = 91.5 bits (100), Expect = 4e-14 Identities = 175/254 (69%), Gaps = 13/254 (5%) Strand=Plus/Minus Query 19828 TGCTTACATGGGACGAGAGTGGGAACTTAGCTATCGACTAGGAATGAGGCCTTGGATTTG 19887 || ||||||| | | ||||||||||||| | || ||||| ||||| | |||||||| Sbjct 404 TGGTTACATGAGTCATGAGTGGGAACTTATTTTTCATCTAGGTATGAGACATTGGATTTC 345 Query 19888 TGTTGCCTACTCTGCTCCGGTTGCAGCCGCCTCTGCGGTCTTTCTCGTCTACCCGTTTGG 19947 | |||| || | ||||| |||||| | | ||| || || | ||||||| |||| Sbjct 344 TTTTGCATATTTAGCTCCTGTTGCAACTGGGACTGTTGTTTTCTTAATCTACCCAATTGG 285 Query 19948 TCAGGGTAGCTTCTCCG--ATG---CTATGCCTTTGGGTATCTCGGGTACGTTCA--ACT 20000 ||| || | | | || | ||| ||| | ||| | ||||| | | |||| | | Sbjct 284 TCAAGGAACCATGTCTGGTATGCCTCTAGGAATTTTGATATCTTG---AAATTCATTATT 228 Query 20001 ACATGTTGGTATTCCAAGCCGAACATAACATTCTCATGCACCCGTTCCACATGCTTGGTG 20060 || || |||||| | | |||||| |||| | |||||||| || |||||| | || | Sbjct 227 GTATATTTGTATTCTAGGTCGAACACAACAAT---ATGCACCCATTTCACATGTTAGGAG 171 Query 20061 TGGCTGGTGTATTC 20074 | || |||||| || Sbjct 170 TAGCCGGTGTAGTC 157 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 148008919442148