Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Carthamus_20tinctorius_20[genbank_20GCA_5F001633085.1_202016-04-27]
463,906 sequences; 661,937,708 total letters
Query= NC_025456.1
Length=46547
Score E
Sequences producing significant alignments: (Bits) Value
seq107965 361 2e-95
seq169634 208 2e-49
seq300680 205 3e-48
seq250312 188 2e-43
seq10884 143 8e-30
seq8631 143 8e-30
seq36621 111 5e-20
seq264332 96.9 1e-15
seq449122 91.5 4e-14
seq138223 91.5 4e-14
>seq107965
Length=6474
Score = 361 bits (400), Expect = 2e-95
Identities = 450/609 (74%), Gaps = 8/609 (1%)
Strand=Plus/Plus
Query 19667 CTTCTTTATGGAAACAACATCATATCGGGAGCCGTCGTTCCGAG--CAGCAATGCCATCG 19724
|| |||||||||||||| || || | || || | |||| | | ||| || || |
Sbjct 5870 CTGCTTTATGGAAACAATATTATTTTAGGTACCATTATTCCTATTTCTGCA--GCTATAG 5927
Query 19725 GACTACACTTCTACCCAATTTGGGAAGCTAGTTCACTTGATGAATGGCTCTACAACGGGG 19784
| | || || |||||||| |||||||| | || ||||||||||| | ||||| || |
Sbjct 5928 GTTTGCATTTTTACCCAATATGGGAAGCAACATCTGTTGATGAATGGTTATACAATGGTG 5987
Query 19785 GACCGTTCCAACTTGTGGTCTTCCACTTCCTCATTGGCATCTATGCTTACATGGGACGAG 19844
| || | |||| | || | |||||| | |||| | | ||||||||| || |
Sbjct 5988 GTCCTTATGAACTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTG 6047
Query 19845 AGTGGGAACTTAGCTATCGACTAGGAATGAGGCCTTGGATTTGTGTTGCCTACTCTGCTC 19904
||||||||||||| | ||| || || ||| | ||||||| |||||| || || ||||
Sbjct 6048 AGTGGGAACTTAGTTTTCGTCTGGGTATGCGAACTTGGATGGTTGTTGCATATTCAGCTC 6107
Query 19905 CGGTTGCAGCCGCCTCTGCGGTCTTTCTCG-TCTACCCGTTTGGTCAGGGTAGCTTCTCC 19963
| |||||||| || || || ||||| | ||||||| ||||||| || ||||| ||
Sbjct 6108 CTGTTGCAGCTGCGAGTGTTGT-TTTCTTGATCTACCCAATTGGTCAAGGAAGCTTTTCT 6166
Query 19964 GATGCTATGCCTTTGGGTATCTCGGGTACGTTCAACTACATGTTGGTATTCCAAGCCGAA 20023
|||| ||||||| | || || || ||||| ||||||| |||| | |||||||| || ||
Sbjct 6167 GATGGTATGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAG 6226
Query 20024 CATAACATTCTCATGCACCCGTTCCACATGCTTGGTGTGGCTGGTGTATTCGGTGGGTCA 20083
|| |||||||| |||||||| || |||||||| ||||| ||||||||| |||| || ||
Sbjct 6227 CACAACATTCTTATGCACCCATTTCACATGCTAGGTGTAGCTGGTGTAATCGGCGGCTCC 6286
Query 20084 CTATTCAGTGCGATGCACGGTTCGCTTGTTACGTCCTCGCTTG-TGCGTGAGACTACTGA 20142
||||||||||| ||||| ||||| |||| || || | ||| | | || || || ||
Sbjct 6287 CTATTCAGTGCTATGCATGGTTC-CTTGGTAACCTCTTGTTTGATCAGGGAAACCACAGA 6345
Query 20143 ACAGGAAAGTCAGAACTATGGTTACAAGTTTGGGCAAGAAGAAGAGACCTATAACATCGT 20202
| | || | || | ||||||| ||||| | |||||| || || ||||| |||||
Sbjct 6346 AAATAAATCTGCTAATGAAGGTTACAGATTTGGTCTAGAAGATGAAACTTATAATATCGT 6405
Query 20203 AGCCGCTCATGGTTACTTTGGACGTTTGATCTTCCAATACGCTTCTTTCAACAATAGCCG 20262
||||| ||||||||| ||||| || |||||||||||||| ||| ||||||||| ||
Sbjct 6406 AGCCGTTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCTAGTTTCAACAACTCTCG 6465
Query 20263 TTCTCTACA 20271
|||| ||||
Sbjct 6466 TTCTTTACA 6474
>seq169634
Length=720
Score = 208 bits (230), Expect = 2e-49
Identities = 323/454 (71%), Gaps = 8/454 (2%)
Strand=Plus/Minus
Query 19526 ACCAACAACCGTCTTTATGTTGGGTGGTTTGGAACACTGATGATTCCGTGTCTCCTTGCA 19585
||| | ||||||||||| |||| |||||||| ||||||| || | || |||
Sbjct 456 ACCGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATCCC-TACCTTATTGAC 398
Query 19586 GCCACCATCTGC-TTCATTATTGCATTCATTGCGGCTCCACCAGTTGACATTGATGGCAT 19644
|| | |||| || ||||| || |||||||| ||||| ||||| || |||||||| ||
Sbjct 397 CGCAACTTCTGTATTTATTATCGCTTTCATTGCTGCTCCTCCAGTGGATATTGATGGTAT 338
Query 19645 CCGCGAACCCGTATCCGGTAGCCTTCTTTATGGAAACAACATCATATCGGGAGCCGTCGT 19704
|| ||||| || | || || |||||||||||| || || || || | | | |
Sbjct 337 TCGTGAACCTGTTTATGGATCTCTAAGTTATGGAAACAATATTATTTCAGGTGTCATTAT 278
Query 19705 TCCGAG--CAGCAATGCCATCGGACTACACTTCTACCCAATTTGGGAAGCTAGTTCACTT 19762
||| | | ||| || || || | || || |||||||| |||||||| || ||
Sbjct 277 TCCTACTTCTGCA--GCTATAGGTTTGCATTTTTACCCAATATGGGAAGCAGCATCCGTT 220
Query 19763 GATGAATGGCTCTACAACGGGGGACCGTTCCAACTTGTGGTCTTCCACTTCCTCATTGGC 19822
||||||||| | ||||| || || || | |||| | || | |||||| | ||||
Sbjct 219 GATGAATGGTTATACAATGGTGGTCCTTATGAACTAATTGTTCTACACTTCTTACTTGGT 160
Query 19823 ATCTATGCTTACATGGGACGAGAGTGGGAACTTAGCTATCGACTAGGAATGAGGCCTTGG 19882
| | ||||||||| || |||||||||||||| | || || || ||| | ||||||
Sbjct 159 GTAGCTTGTTACATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGACCTTGG 100
Query 19883 ATTTGTGTTGCCTACTCTGCTCCGGTTGCAGCCGCCTCTGCGGTCTTTCTCG-TCTACCC 19941
||| |||||| || || ||| | |||||||| || |||| || ||||| | |||||||
Sbjct 99 ATTGTTGTTGCATATTCAGCTTCTGTTGCAGCTGCAACTGCTGT-TTTCTTGATCTACCC 41
Query 19942 GTTTGGTCAGGGTAGCTTCTCCGATGCTATGCCT 19975
||||||| || ||||| || |||| |||||||
Sbjct 40 AATTGGTCAAGGAAGCTTTTCTGATGGTATGCCT 7
>seq300680
Length=3790
Score = 205 bits (226), Expect = 3e-48
Identities = 240/322 (75%), Gaps = 2/322 (1%)
Strand=Plus/Minus
Query 19955 AGCTTCTCCGATGCTATGCCTTTGGGTATCTCGGGTACGTTCAACTACATGTTGGTATTC 20014
||||| || |||| ||||||| | || || || ||||| ||||||| |||| | ||||||
Sbjct 673 AGCTTTTCTGATGGTATGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATTGTATTC 614
Query 20015 CAAGCCGAACATAACATTCTCATGCACCCGTTCCACATGCTTGGTGTGGCTGGTGTATTC 20074
|| | || || |||||||| |||||||| || |||||||| | || ||||||||| ||
Sbjct 613 CAGGTTGAGCACAACATTCTTATGCACCCATTTCACATGCTAAGCGTAGCTGGTGTACTC 554
Query 20075 GGTGGGTCACTATTCAGTGCGATGCACGGTTCGCTTGTTACGTCCTCGCTTGTGCGTGAG 20134
| | || ||||| | ||| ||||| ||||| | || || || | | || | ||
Sbjct 553 GTCAGCTCCCTATTTAATGCTATGCATGGTTCCTTGGTAACCTC-TAGTTTAATCAGGAA 495
Query 20135 ACTACTGAACAGGAAAGTCAGAACTATGGTTACAAGTTTGGGCAAGAAGAAGAGACCT-A 20193
|| | ||| | ||| | || | |||||||| || || ||||||||||| | || |
Sbjct 494 ACCAGAGAAAATGAATTTGCTAATGAAGGTTACAAATTCGGTCAAGAAGAAGAAAACTTA 435
Query 20194 TAACATCGTAGCCGCTCATGGTTACTTTGGACGTTTGATCTTCCAATACGCTTCTTTCAA 20253
||| |||||||||||||||||||| ||||| || ||| ||||||| || ||| ||||||
Sbjct 434 TAATATCGTAGCCGCTCATGGTTATTTTGGCCGATTGGTCTTCCAGTATGCTAGTTTCAA 375
Query 20254 CAATAGCCGTTCTCTACACTTC 20275
||| |||||| |||| |||
Sbjct 374 CAACTCTCGTTCTTTACATTTC 353
>seq250312
Length=8481
Score = 188 bits (208), Expect = 2e-43
Identities = 325/466 (70%), Gaps = 17/466 (4%)
Strand=Plus/Plus
Query 20021 GAACATAACATTCTCATGCACCCGTTCCACATGCTTGGTGTGGCTGGTGTATTCGGTGGG 20080
|| || |||||||| | |||| | || |||||||| || || ||||||||| | || |
Sbjct 1574 GAGCACAACATTCTTAGGCACTCATTTCACATGCTAGGCGTAGCTGGTGTAATTGGCAGC 1633
Query 20081 TCACTATTCAGTGCGATGCACGGTTCGCTTGTTACGTCCTCGCTTGTGC-GTGAGACTAC 20139
|| ||||||||||| |||| ||||| |||| || ||| | ||| | | || || ||
Sbjct 1634 TCCCTATTCAGTGCTATGCGTGGTTC-CTTGGTAACCCCTAGTTTGATCAGGGAAACCAC 1692
Query 20140 TGAACAGGAAAGTCAG--AACTATGGTTACAAGTTTGGGCAAGAAGAAGAGACCTATAAC 20197
| | ||| | || || | ||||| | || || ||||||| ||| | || ||
Sbjct 1693 AAAGAATGAA--TAAGCTAATGAAGGTTATATATTCGGTCAAGAAGGAGAAAATTAGAAT 1750
Query 20198 ATCGTAGCCGCTCATGGTTACTTTGGACGTTTGATCTTCCAATACGCTTCTTTCAACAAT 20257
|| ||||||||||||||||| ||||| || |||||||||| | | ||| |||||||||
Sbjct 1751 ATTGTAGCCGCTCATGGTTATTTTGGTCGATTGATCTTCCGACATGCTAGTTTCAACAAC 1810
Query 20258 AGCCGTTCTCTACACTTCTTCCTTGCTGCCTGGCCGGTGGTAGGGATTTGGTTCGCTGCC 20317
|||| | |||| |||||||| ||| | ||||| || ||||| ||
Sbjct 1811 TCACGTTTTTTACATTTCTTCCTAGCTACTTGGCC---------TATCTGGTTTATTGTG 1861
Query 20318 TTGGGCGTTTCTACAATGGCGTTTAATCTGAACGGTTTCAACTTTAACCAGTCCCTTCTC 20377
|| || | || ||||| | || || || ||||| | || | || || | ||
Sbjct 1862 TTAGGTATCAGCACTATGGCTTACAACCTAAATGGTTTTAGTTTCCATCAATCTGTAGTC 1921
Query 20378 GACA-ACAATGGTCGTGTCATTGATACTTGGGCTGACATTCTCAATCGTGCTAATCTCGG 20436
|||| |||| ||| ||| ||| ||||||||||||| || | || ||||||| || ||
Sbjct 1922 GACAGTCAAT-GTCATGTAATTAATACTTGGGCTGATATCATTAACTGTGCTAACCTTGG 1980
Query 20437 GTTTGAGGTGATGCATGAACGGAATGCTCATAACTTCCCACTTGAC 20482
| || || ||| ||||| | ||||||||||| ||||| || |||
Sbjct 1981 TATGGAAGTTATGTATGAATGTAATGCTCATAATTTCCCTCTAGAC 2026
>seq10884
Length=5042
Score = 143 bits (158), Expect = 8e-30
Identities = 123/152 (81%), Gaps = 0/152 (0%)
Strand=Plus/Plus
Query 19955 AGCTTCTCCGATGCTATGCCTTTGGGTATCTCGGGTACGTTCAACTACATGTTGGTATTC 20014
||||| || |||| ||||||| | || || || ||||| ||||||| |||| | ||||||
Sbjct 3786 AGCTTTTCTGATGGTATGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATTGTATTC 3845
Query 20015 CAAGCCGAACATAACATTCTCATGCACCCGTTCCACATGCTTGGTGTGGCTGGTGTATTC 20074
|| || || || |||||||| |||||||| || |||||||| || || ||||||||||||
Sbjct 3846 CAGGCTGAGCACAACATTCTTATGCACCCATTTCACATGCTAGGCGTAGCTGGTGTATTC 3905
Query 20075 GGTGGGTCACTATTCAGTGCGATGCACGGTTC 20106
|| || || ||||||| ||| || || |||||
Sbjct 3906 GGCGGCTCCCTATTCATTGCTATACATGGTTC 3937
>seq8631
Length=609
Score = 143 bits (158), Expect = 8e-30
Identities = 130/161 (81%), Gaps = 2/161 (1%)
Strand=Plus/Minus
Query 19955 AGCTTCTCCGATGCTATGCCTTTGGGTATCTCGGGTACGTTCAACTACATGTTGGTATTC 20014
||||| | |||| ||||||| | || || || ||||| ||||||| |||| | ||||||
Sbjct 338 AGCTTTTTTGATGGTATGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATTGTATTC 279
Query 20015 CAAGCCGAACATAACATTCTCATGCACCCGTTCCACATGCTTGGTGTGGCTGGTGTATTC 20074
|| ||||| || |||||||| |||||||| || |||||||| | || ||||||||||||
Sbjct 278 CAGGCCGAGCACAACATTCTTATGCACCCATTTCACATGCTAGACGTAGCTGGTGTATTC 219
Query 20075 GGTGGGTCACT-ATTCAGTGCGATGCACGGTTCGCTTGTTA 20114
|| || || || ||||||||| ||||| ||||| |||| ||
Sbjct 218 GGCGGCTCCCTAATTCAGTGCTATGCATGGTTC-CTTGGTA 179
>seq36621
Length=13842
Score = 111 bits (122), Expect = 5e-20
Identities = 209/303 (69%), Gaps = 7/303 (2%)
Strand=Plus/Minus
Query 20183 GAAGAGACCTATAACATCGTAGCCGCTCATGGTTACTTTGGACGTTTGATCTTCCAATAC 20242
||||| || ||||| |||||| ||||||||||| ||||| | ||||||||| ||||
Sbjct 7968 GAAGAAACTTATAATATCGTATATGCTCATGGTTA-TTTGGCTGATTGATCTTCTAATAT 7910
Query 20243 GCTTCTTTCAACAATAGCCGTTCTCTACACTTCTTCCTTGCTGCCTGGCCGGTGGTAGGG 20302
||| ||||||| | | || | || | || || || ||||| ||||| || | ||
Sbjct 7909 GCTAGTTTCAACGACTCTCATTTTATATATTTTTTTCTAGCTGCTTGGCCTGTTTTTGGT 7850
Query 20303 ATTTGGTTCGCTGCCTTGGGCGTTTCTA-CA--ATGGCGTTTAATCTGAACGGTTTCAAC 20359
|| |||||| |||| ||||| | ||| || ||||| || || || || |||| ||
Sbjct 7849 ATATGGTTCACTGCGTTGGG---TACTAGCATTATGGCTTTCAACCTAAATGGTTGAAAT 7793
Query 20360 TTTAACCAGTCCCTTCTCGACAACAATGGTCGTGTCATTGATACTTGGGCTGACATTCTC 20419
||||| | | | || | | | ||||| || ||||||| | ||| ||
Sbjct 7792 CGAAACCAATTGGTAGTTGATAGTCACAGCCGTGTAATGAATACTTGAGGTGATATCAGT 7733
Query 20420 AATCGTGCTAATCTCGGGTTTGAGGTGATGCATGAACGGAATGCTCATAACTTCCCACTT 20479
|| | |||||| || | | | || ||||||||||| ||||||||||| | ||| ||
Sbjct 7732 AACCATGCTAACCTTGTTATGAATGTTATGCATGAACGTAATGCTCATAATTCCCCTCTA 7673
Query 20480 GAC 20482
|||
Sbjct 7672 GAC 7670
>seq264332
Length=996
Score = 96.9 bits (106), Expect = 1e-15
Identities = 83/103 (81%), Gaps = 0/103 (0%)
Strand=Plus/Minus
Query 20220 TTGGACGTTTGATCTTCCAATACGCTTCTTTCAACAATAGCCGTTCTCTACACTTCTTCC 20279
|||| || |||||||||||||| ||| ||||||||| |||||| |||| |||||||
Sbjct 274 TTGGCCGATTGATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCTTTACATTTCTTCC 215
Query 20280 TTGCTGCCTGGCCGGTGGTAGGGATTTGGTTCGCTGCCTTGGG 20322
| ||||| ||||| || ||||| || |||||| |||| || ||
Sbjct 214 TAGCTGCTTGGCCTGTAGTAGGCATCTGGTTCACTGCGTTAGG 172
>seq449122
Length=870
Score = 91.5 bits (100), Expect = 4e-14
Identities = 68/80 (85%), Gaps = 0/80 (0%)
Strand=Plus/Plus
Query 20164 TTACAAGTTTGGGCAAGAAGAAGAGACCTATAACATCGTAGCCGCTCATGGTTACTTTGG 20223
||||| || || ||||||||||| || || || |||||||||||||||||||| |||||
Sbjct 176 TTACAGATTCGGTCAAGAAGAAGAAACTTACAATATCGTAGCCGCTCATGGTTATTTTGG 235
Query 20224 ACGTTTGATCTTCCAATACG 20243
| ||||||||||||||||
Sbjct 236 CCAATTGATCTTCCAATACG 255
>seq138223
Length=10580
Score = 91.5 bits (100), Expect = 4e-14
Identities = 175/254 (69%), Gaps = 13/254 (5%)
Strand=Plus/Minus
Query 19828 TGCTTACATGGGACGAGAGTGGGAACTTAGCTATCGACTAGGAATGAGGCCTTGGATTTG 19887
|| ||||||| | | ||||||||||||| | || ||||| ||||| | ||||||||
Sbjct 404 TGGTTACATGAGTCATGAGTGGGAACTTATTTTTCATCTAGGTATGAGACATTGGATTTC 345
Query 19888 TGTTGCCTACTCTGCTCCGGTTGCAGCCGCCTCTGCGGTCTTTCTCGTCTACCCGTTTGG 19947
| |||| || | ||||| |||||| | | ||| || || | ||||||| ||||
Sbjct 344 TTTTGCATATTTAGCTCCTGTTGCAACTGGGACTGTTGTTTTCTTAATCTACCCAATTGG 285
Query 19948 TCAGGGTAGCTTCTCCG--ATG---CTATGCCTTTGGGTATCTCGGGTACGTTCA--ACT 20000
||| || | | | || | ||| ||| | ||| | ||||| | | |||| | |
Sbjct 284 TCAAGGAACCATGTCTGGTATGCCTCTAGGAATTTTGATATCTTG---AAATTCATTATT 228
Query 20001 ACATGTTGGTATTCCAAGCCGAACATAACATTCTCATGCACCCGTTCCACATGCTTGGTG 20060
|| || |||||| | | |||||| |||| | |||||||| || |||||| | || |
Sbjct 227 GTATATTTGTATTCTAGGTCGAACACAACAAT---ATGCACCCATTTCACATGTTAGGAG 171
Query 20061 TGGCTGGTGTATTC 20074
| || |||||| ||
Sbjct 170 TAGCCGGTGTAGTC 157
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 148008919442148
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