Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carthamus_20tinctorius_20[genbank_20GCA_5F001633085.1_202016-04-27] 463,906 sequences; 661,937,708 total letters Query= NC_025461.1 Length=45871 Score E Sequences producing significant alignments: (Bits) Value seq107965 324 4e-84 seq169634 201 3e-47 seq250312 192 2e-44 seq300680 181 3e-41 seq36621 125 2e-24 seq264332 96.9 1e-15 seq449122 87.8 5e-13 seq254652 80.6 8e-11 >seq107965 Length=6474 Score = 324 bits (358), Expect = 4e-84 Identities = 399/543 (73%), Gaps = 2/543 (0%) Strand=Plus/Plus Query 28858 CACTTCTACCCAATTTGGGAAGCTAATTCACTTGATGAATGGCTCTACAACGGGGGACCG 28917 || || |||||||| |||||||| | || ||||||||||| | ||||| || || || Sbjct 5933 CATTTTTACCCAATATGGGAAGCAACATCTGTTGATGAATGGTTATACAATGGTGGTCCT 5992 Query 28918 TTCCAACTTGTGGTCTTCCACTTCCTCATTGGCGTCTATGCTTACATGGGACGCGAGTGG 28977 | |||| | || | |||||| | |||| || | ||||||||| || |||||| Sbjct 5993 TATGAACTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGG 6052 Query 28978 GAACTTAGCTATCGACTAGGAATGAGGCCGTGGATTTGTGTCGCATACTCAGCTCCCGTC 29037 |||||||| | ||| || || ||| | | ||||| ||| ||||| |||||||| || Sbjct 6053 GAACTTAGTTTTCGTCTGGGTATGCGAACTTGGATGGTTGTTGCATATTCAGCTCCTGTT 6112 Query 29038 GCAGCGGCATCTGCGGTTTTCCTCGTCTACCCATTCGGTCAAGGTTCTTTTAGCGACGCG 29097 ||||| || || |||||| | |||||||| | |||||||| ||| || | Sbjct 6113 GCAGCTGCGAGTGTTGTTTTCTTGATCTACCCAATTGGTCAAGGAAGCTTTTCTGATGGT 6172 Query 29098 ATGCCTTTGGGTATTTCAGGCACCTTCAACTACATGCTGGTGTTCCAAGCCGAACATAAC 29157 |||||| | || ||||| || || ||||||| |||| | || ||||| || || || ||| Sbjct 6173 ATGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCACAAC 6232 Query 29158 ATTCTCATGCACCCGTTCCACATGCTGGGCGTTGCTGGAGTGTTCGGTGGCTCGCTATTT 29217 ||||| |||||||| || |||||||| || || ||||| || |||| ||||| ||||| Sbjct 6233 ATTCTTATGCACCCATTTCACATGCTAGGTGTAGCTGGTGTAATCGGCGGCTCCCTATTC 6292 Query 29218 AGTGCAATGCACGGTTCGCTTGTCACGTCCTCGCTTG-TGCGTGAGACGACTGAAGACAT 29276 ||||| ||||| ||||| | || || | || | ||| | | || || || ||| | | Sbjct 6293 AGTGCTATGCATGGTTCCTTGGTAACCT-CTTGTTTGATCAGGGAAACCACAGAAAATAA 6351 Query 29277 CTCTCAGAACTATGGTTACAAGTTTGGACAAGAAGAAGAGACTTATAACATCGTAGCCGC 29336 ||| || | ||||||| ||||| | |||||| || |||||||| |||||||||| Sbjct 6352 ATCTGCTAATGAAGGTTACAGATTTGGTCTAGAAGATGAAACTTATAATATCGTAGCCGT 6411 Query 29337 TCACGGTTACTTTGGACGTTTGATCTTCCAATATGCTTCTTTCAATAATAGCCGTTCTCT 29396 ||| ||||| ||||| || |||||||||||||||||| |||||| || |||||| | Sbjct 6412 TCATGGTTATTTTGGCCGATTGATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCTTT 6471 Query 29397 ACA 29399 ||| Sbjct 6472 ACA 6474 >seq169634 Length=720 Score = 201 bits (222), Expect = 3e-47 Identities = 306/431 (71%), Gaps = 6/431 (1%) Strand=Plus/Minus Query 28654 ACCAACAACCGTCTTTATGTTGGGTGGTTTGGAACACTGATGATTCCGTGTCTCCTTGCA 28713 ||| | ||||||||||| |||| |||||||| ||||||| || | || ||| Sbjct 456 ACCGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATCCC-TACCTTATTGAC 398 Query 28714 GCCACCATCTGC-TTCATTATTGCATTCATTGCGGCACCACCAGTTGACATTGATGGCAT 28772 || | |||| || ||||| || |||||||| || || ||||| || |||||||| || Sbjct 397 CGCAACTTCTGTATTTATTATCGCTTTCATTGCTGCTCCTCCAGTGGATATTGATGGTAT 338 Query 28773 CCGCGAACCTGTCGCTGGAAGTCTTCTCTATGGAAACAACATCATATCGGGAGCCGTCGT 28832 || |||||||| |||| ||| ||||||||||| || || || || | | | | Sbjct 337 TCGTGAACCTGTTTATGGATCTCTAAGTTATGGAAACAATATTATTTCAGGTGTCATTAT 278 Query 28833 ACCGAG--CAGCAATGCCATCGGACTACACTTCTACCCAATTTGGGAAGCTAATTCACTT 28890 || | | ||| || || || | || || |||||||| |||||||| || || Sbjct 277 TCCTACTTCTGCA--GCTATAGGTTTGCATTTTTACCCAATATGGGAAGCAGCATCCGTT 220 Query 28891 GATGAATGGCTCTACAACGGGGGACCGTTCCAACTTGTGGTCTTCCACTTCCTCATTGGC 28950 ||||||||| | ||||| || || || | |||| | || | |||||| | |||| Sbjct 219 GATGAATGGTTATACAATGGTGGTCCTTATGAACTAATTGTTCTACACTTCTTACTTGGT 160 Query 28951 GTCTATGCTTACATGGGACGCGAGTGGGAACTTAGCTATCGACTAGGAATGAGGCCGTGG 29010 || | ||||||||| || |||||||||||||| | || || || ||| | || ||| Sbjct 159 GTAGCTTGTTACATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGACCTTGG 100 Query 29011 ATTTGTGTCGCATACTCAGCTCCCGTCGCAGCGGCATCTGCGGTTTTCCTCGTCTACCCA 29070 ||| ||| ||||| |||||| | || ||||| ||| |||| |||||| | |||||||| Sbjct 99 ATTGTTGTTGCATATTCAGCTTCTGTTGCAGCTGCAACTGCTGTTTTCTTGATCTACCCA 40 Query 29071 TTCGGTCAAGG 29081 | |||||||| Sbjct 39 ATTGGTCAAGG 29 >seq250312 Length=8481 Score = 192 bits (212), Expect = 2e-44 Identities = 326/465 (70%), Gaps = 17/465 (4%) Strand=Plus/Plus Query 29149 GAACATAACATTCTCATGCACCCGTTCCACATGCTGGGCGTTGCTGGAGTGTTCGGTGGC 29208 || || |||||||| | |||| | || |||||||| ||||| ||||| || | || || Sbjct 1574 GAGCACAACATTCTTAGGCACTCATTTCACATGCTAGGCGTAGCTGGTGTAATTGGCAGC 1633 Query 29209 TCGCTATTTAGTGCAATGCACGGTTCGCTTGTCACGTCCTCGCTTGTGC-GTGAGACGAC 29267 || ||||| ||||| |||| ||||| | || || ||| | ||| | | || || || Sbjct 1634 TCCCTATTCAGTGCTATGCGTGGTTCCTTGGTAACC-CCTAGTTTGATCAGGGAAACCAC 1692 Query 29268 TGAAGACATCTCTCAG--AACTATGGTTACAAGTTTGGACAAGAAGAAGAGACTTATAAC 29325 |||| || | || || | ||||| | || || ||||||| ||| | ||| || Sbjct 1693 A-AAGA-ATGAATAAGCTAATGAAGGTTATATATTCGGTCAAGAAGGAGAAAATTAGAAT 1750 Query 29326 ATCGTAGCCGCTCACGGTTACTTTGGACGTTTGATCTTCCAATATGCTTCTTTCAATAAT 29385 || ||||||||||| ||||| ||||| || |||||||||| | ||||| |||||| || Sbjct 1751 ATTGTAGCCGCTCATGGTTATTTTGGTCGATTGATCTTCCGACATGCTAGTTTCAACAAC 1810 Query 29386 AGCCGTTCTCTACACTTCTTCCTTGCTGCCTGGCCGGTGGTAGGGATTTGGTTCGCTGCC 29445 |||| | |||| |||||||| ||| | ||||| || ||||| || Sbjct 1811 TCACGTTTTTTACATTTCTTCCTAGCTACTTGGCC---------TATCTGGTTTATTGTG 1861 Query 29446 TTGGGCGTTTCTACAATGGCGTTTAATCTGAACGGTTTTAACTTTAACCAGTCGCTTCTC 29505 || || | || ||||| | || || || ||||||| || | || || | || Sbjct 1862 TTAGGTATCAGCACTATGGCTTACAACCTAAATGGTTTTAGTTTCCATCAATCTGTAGTC 1921 Query 29506 GACA-ACAATGGTCGTGTCATTAATACTTGGGCTGATGTTCTCAATCGCGCTAACCTCGG 29564 |||| |||| ||| ||| |||||||||||||||||| | | || | |||||||| || Sbjct 1922 GACAGTCAAT-GTCATGTAATTAATACTTGGGCTGATATCATTAACTGTGCTAACCTTGG 1980 Query 29565 CTTTGAAGTAATGCATGAGCGTAATGCTCATAACTTCCCACTTGA 29609 | ||||| ||| |||| ||||||||||||| ||||| || || Sbjct 1981 TATGGAAGTTATGTATGAATGTAATGCTCATAATTTCCCTCTAGA 2025 >seq300680 Length=3790 Score = 181 bits (200), Expect = 3e-41 Identities = 226/307 (74%), Gaps = 2/307 (1%) Strand=Plus/Minus Query 29098 ATGCCTTTGGGTATTTCAGGCACCTTCAACTACATGCTGGTGTTCCAAGCCGAACATAAC 29157 |||||| | || ||||| || || ||||||| |||| | || ||||| | || || ||| Sbjct 658 ATGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATTGTATTCCAGGTTGAGCACAAC 599 Query 29158 ATTCTCATGCACCCGTTCCACATGCTGGGCGTTGCTGGAGTGTTCGGTGGCTCGCTATTT 29217 ||||| |||||||| || |||||||| |||| ||||| || ||| |||| |||||| Sbjct 598 ATTCTTATGCACCCATTTCACATGCTAAGCGTAGCTGGTGTACTCGTCAGCTCCCTATTT 539 Query 29218 AGTGCAATGCACGGTTCGCTTGTCACGTCCTCGCTTGTGCGTGAGACGACTGAAGACATC 29277 | ||| ||||| ||||| | || || || | | || | || || | ||| | Sbjct 538 AATGCTATGCATGGTTCCTTGGTAACCTC-TAGTTTAATCAGGAAACCAGAGAAAATGAA 480 Query 29278 TCTCAGAACTATGGTTACAAGTTTGGACAAGAAGAAGAGA-CTTATAACATCGTAGCCGC 29336 | | || | |||||||| || || ||||||||||| | ||||||| ||||||||||| Sbjct 479 TTTGCTAATGAAGGTTACAAATTCGGTCAAGAAGAAGAAAACTTATAATATCGTAGCCGC 420 Query 29337 TCACGGTTACTTTGGACGTTTGATCTTCCAATATGCTTCTTTCAATAATAGCCGTTCTCT 29396 ||| ||||| ||||| || ||| ||||||| |||||| |||||| || |||||| | Sbjct 419 TCATGGTTATTTTGGCCGATTGGTCTTCCAGTATGCTAGTTTCAACAACTCTCGTTCTTT 360 Query 29397 ACACTTC 29403 ||| ||| Sbjct 359 ACATTTC 353 >seq36621 Length=13842 Score = 125 bits (138), Expect = 2e-24 Identities = 218/310 (70%), Gaps = 9/310 (3%) Strand=Plus/Minus Query 29311 GAAGAGACTTATAACATCGTAGCCGCTCACGGTTACTTTGGACGTTTGATCTTCCAATAT 29370 ||||| |||||||| |||||| ||||| ||||| ||||| | ||||||||| ||||| Sbjct 7968 GAAGAAACTTATAATATCGTATATGCTCATGGTTA-TTTGGCTGATTGATCTTCTAATAT 7910 Query 29371 GCTTCTTTCAATAATAGCCGTTCTCTACACTTCTTCCTTGCTGCCTGGCCGGTGGTAGGG 29430 ||| |||||| | | || | || | || || || ||||| ||||| || | || Sbjct 7909 GCTAGTTTCAACGACTCTCATTTTATATATTTTTTTCTAGCTGCTTGGCCTGTTTTTGGT 7850 Query 29431 ATTTGGTTCGCTGCCTTGGGCGTTTCTA-CA--ATGGCGTTTAATCTGAACGGTTTTAAC 29487 || |||||| |||| ||||| | ||| || ||||| || || || || |||| || Sbjct 7849 ATATGGTTCACTGCGTTGGG---TACTAGCATTATGGCTTTCAACCTAAATGGTTGAAAT 7793 Query 29488 TTTAACCAGTCGCTTCTCGACAACAATGGTCGTGTCATTAATACTTGGGCTGATGTTCTC 29547 ||||| | | | | || | | | ||||| || |||||||| | |||| | Sbjct 7792 CGAAACCAATTGGTAGTTGATAGTCACAGCCGTGTAATGAATACTTGAGGTGATATCAGT 7733 Query 29548 AATCGCGCTAACCTCGGCTTTGAA-GTAATGCATGAGCGTAATGCTCATAACTTCCCACT 29606 || | |||||||| | | |||| || |||||||| |||||||||||||| | ||| || Sbjct 7732 AACCATGCTAACCTTGT-TATGAATGTTATGCATGAACGTAATGCTCATAATTCCCCTCT 7674 Query 29607 TGATCTGGCT 29616 || ||||| Sbjct 7673 AGACTTGGCT 7664 >seq264332 Length=996 Score = 96.9 bits (106), Expect = 1e-15 Identities = 83/103 (81%), Gaps = 0/103 (0%) Strand=Plus/Minus Query 29348 TTGGACGTTTGATCTTCCAATATGCTTCTTTCAATAATAGCCGTTCTCTACACTTCTTCC 29407 |||| || |||||||||||||||||| |||||| || |||||| |||| ||||||| Sbjct 274 TTGGCCGATTGATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCTTTACATTTCTTCC 215 Query 29408 TTGCTGCCTGGCCGGTGGTAGGGATTTGGTTCGCTGCCTTGGG 29450 | ||||| ||||| || ||||| || |||||| |||| || || Sbjct 214 TAGCTGCTTGGCCTGTAGTAGGCATCTGGTTCACTGCGTTAGG 172 >seq449122 Length=870 Score = 87.8 bits (96), Expect = 5e-13 Identities = 66/78 (85%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 29292 TTACAAGTTTGGACAAGAAGAAGAGACTTATAACATCGTAGCCGCTCACGGTTACTTTGG 29351 ||||| || || ||||||||||| ||||| || |||||||||||||| ||||| ||||| Sbjct 176 TTACAGATTCGGTCAAGAAGAAGAAACTTACAATATCGTAGCCGCTCATGGTTATTTTGG 235 Query 29352 ACGTTTGATCTTCCAATA 29369 | |||||||||||||| Sbjct 236 CCAATTGATCTTCCAATA 253 >seq254652 Length=6058 Score = 80.6 bits (88), Expect = 8e-11 Identities = 184/276 (67%), Gaps = 1/276 (0%) Strand=Plus/Plus Query 28759 GACATTGATGGCATCCGCGAACCTGTCGCTGGAAGTCTTCTCTATGGAAACAACATCATA 28818 || |||||||| || | |||||| | | | ||| || ||||||||||| || || Sbjct 669 GATATTGATGGTATTCATGAACCTATTTTTACATCTCTACTTTATGGAAACAATATTATT 728 Query 28819 TCGGGAGCCGTCGTACCGAGCAGCAATGCCATCGGACTACACTTCTACCCAATTTGGGAA 28878 || || | || | || | | || | || | || || |||| ||| | |||| Sbjct 729 TCAGGTGTTGTTATTCCTACTTCTACAGCTACAGGTTTGCATTTTTACCTAATATAGGAA 788 Query 28879 GCTAATTCACTTGATGAATGGCTC-TACAACGGGGGACCGTTCCAACTTGTGGTCTTCCA 28937 || | | ||||||||||| | ||||| || || || | |||| | || | || Sbjct 789 GCAACATTTGTTGATGAATGGTTTATACAATGGTGGTCCTTATGAACTAATTGTACTACA 848 Query 28938 CTTCCTCATTGGCGTCTATGCTTACATGGGACGCGAGTGGGAACTTAGCTATCGACTAGG 28997 |||| | |||| || ||||||||| ||||||||||||||||| | || || || Sbjct 849 CTTCTTACTTGGTGTAGCGTGTTACATGGGTCGCGAGTGGGAACTTAGTTTCCGTCTGGG 908 Query 28998 AATGAGGCCGTGGATTTGTGTCGCATACTCAGCTCC 29033 || | || | |||| ||| ||||| |||||||| Sbjct 909 TGTGCGACCTTTGATTGTTGTTGCATATTCAGCTCC 944 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 145857636259476