Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carthamus_20tinctorius_20[genbank_20GCA_5F001633085.1_202016-04-27] 463,906 sequences; 661,937,708 total letters Query= NC_025464.1 Length=44147 Score E Sequences producing significant alignments: (Bits) Value seq107965 336 6e-88 seq169634 223 1e-53 seq300680 183 9e-42 seq250312 179 1e-40 seq10884 136 1e-27 seq8631 132 1e-26 seq36621 109 2e-19 seq254652 96.9 1e-15 seq138223 87.8 5e-13 seq92275 87.8 5e-13 >seq107965 Length=6474 Score = 336 bits (372), Expect = 6e-88 Identities = 442/608 (73%), Gaps = 6/608 (1%) Strand=Plus/Plus Query 18886 CTTCTTTATGGAAACAACATCATATCGGGAGCCGTCGTTCCGAG--CAGCAATGCCATCG 18943 || |||||||||||||| || || | || || | |||| | | ||| || || | Sbjct 5870 CTGCTTTATGGAAACAATATTATTTTAGGTACCATTATTCCTATTTCTGCA--GCTATAG 5927 Query 18944 GACTACACTTCTACCCAATTTGGGAAGCTAATTCACTTGATGAATGGCTCTACAACGGGG 19003 | | || || |||||||| |||||||| | || ||||||||||| | ||||| || | Sbjct 5928 GTTTGCATTTTTACCCAATATGGGAAGCAACATCTGTTGATGAATGGTTATACAATGGTG 5987 Query 19004 GACCGTTCCAACTTGTGGTCTTCCACTTCCTCATTGGCGTCTATGCTTACATGGGACGCG 19063 | || | |||| | || | |||||| | |||| || | ||||||||| || | Sbjct 5988 GTCCTTATGAACTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTG 6047 Query 19064 AGTGGGAACTTAGCTATCGACTAGGGATGCGCCCTTGGATTTGTGTTGCCTACTCAGCTC 19123 ||||||||||||| | ||| || || ||||| ||||||| |||||| || ||||||| Sbjct 6048 AGTGGGAACTTAGTTTTCGTCTGGGTATGCGAACTTGGATGGTTGTTGCATATTCAGCTC 6107 Query 19124 CTGTTGCCGCAGCCTCTGCGGTCTTCCTTGTCTATCCATTTGGTCAAGGTTCCTTTAGCG 19183 ||||||| || || || || ||| | |||| ||| |||||||||| |||| | Sbjct 6108 CTGTTGCAGCTGCGAGTGTTGTTTTCTTGATCTACCCAATTGGTCAAGGAAGCTTTTCTG 6167 Query 19184 ACGCTATGCCTTTGGGTATTAGTGGTACGTTCAACTACATGCTTGTATTCCAGGCTGAAC 19243 | | ||||||| | || ||| |||||| ||||||| |||| |||||||||||||||| | Sbjct 6168 ATGGTATGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGC 6227 Query 19244 ATAACATCCTCATGCACCCGTTCCACATGCTCGGTGTCGCTGGTGTGTTCGGCGGGTCAC 19303 | ||||| || |||||||| || |||||||| ||||| |||||||| ||||||| || | Sbjct 6228 ACAACATTCTTATGCACCCATTTCACATGCTAGGTGTAGCTGGTGTAATCGGCGGCTCCC 6287 Query 19304 TATTTAGTGCGATGCACGGTTCGCTTGTTACGTCCTCGCTTG-TGCGTGAAACTACTGAA 19362 |||| ||||| ||||| ||||| |||| || || | ||| | | ||||| || ||| Sbjct 6288 TATTCAGTGCTATGCATGGTTC-CTTGGTAACCTCTTGTTTGATCAGGGAAACCACAGAA 6346 Query 19363 GAGGTATCTCAGAACTATGGCTACAAGTTTGGGCAAGAAGAAGAGACTTATAACATTGTT 19422 | |||| || | || |||| ||||| | |||||| || |||||||| || || Sbjct 6347 AATAAATCTGCTAATGAAGGTTACAGATTTGGTCTAGAAGATGAAACTTATAATATCGTA 6406 Query 19423 GCTGCTCATGGGTATTTTGGTCGGCTTATTTTCCAGTACGCATCCTTCAACAATAGCCGT 19482 || | |||||| |||||||| || | || ||||| || || |||||||| ||| Sbjct 6407 GCCGTTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCTAGTTTCAACAACTCTCGT 6466 Query 19483 TCTCTACA 19490 ||| |||| Sbjct 6467 TCTTTACA 6474 >seq169634 Length=720 Score = 223 bits (246), Expect = 1e-53 Identities = 328/457 (72%), Gaps = 8/457 (2%) Strand=Plus/Minus Query 18742 AGTACAGATAACCGTCTTTATATCGGCTGGTTTGGAACACTGATGATTCCGTGTCTCCTT 18801 ||||| || ||||||||||| || || |||||||| ||||||| || | || || Sbjct 459 AGTACCGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATCCC-TACCTTATT 401 Query 18802 G-CAGCTACTATTTGT-TTCATTATTGCCTTCATTGCTGCACCTCCTGTAGACATTGATG 18859 | | || ||| | ||| || ||||| || ||||||||||| ||||| || || ||||||| Sbjct 400 GACCGCAACT-TCTGTATTTATTATCGCTTTCATTGCTGCTCCTCCAGTGGATATTGATG 342 Query 18860 GCATCCGCGAGCCTGTTGCAGGCAGTCTTCTTTATGGAAACAACATCATATCGGGAGCCG 18919 | || || || |||||| || ||| |||||||||||| || || || || | | Sbjct 341 GTATTCGTGAACCTGTTTATGGATCTCTAAGTTATGGAAACAATATTATTTCAGGTGTCA 282 Query 18920 TCGTTCCGAG--CAGCAATGCCATCGGACTACACTTCTACCCAATTTGGGAAGCTAATTC 18977 | |||| | | ||| || || || | || || |||||||| |||||||| || Sbjct 281 TTATTCCTACTTCTGCA--GCTATAGGTTTGCATTTTTACCCAATATGGGAAGCAGCATC 224 Query 18978 ACTTGATGAATGGCTCTACAACGGGGGACCGTTCCAACTTGTGGTCTTCCACTTCCTCAT 19037 ||||||||||| | ||||| || || || | |||| | || | |||||| | | Sbjct 223 CGTTGATGAATGGTTATACAATGGTGGTCCTTATGAACTAATTGTTCTACACTTCTTACT 164 Query 19038 TGGCGTCTATGCTTACATGGGACGCGAGTGGGAACTTAGCTATCGACTAGGGATGCGCCC 19097 ||| || | ||||||||| || |||||||||||||| | || || || ||||| || Sbjct 163 TGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGACC 104 Query 19098 TTGGATTTGTGTTGCCTACTCAGCTCCTGTTGCCGCAGCCTCTGCGGTCTTCCTTGTCTA 19157 ||||||| |||||| || |||||| ||||||| || || |||| || ||| | |||| Sbjct 103 TTGGATTGTTGTTGCATATTCAGCTTCTGTTGCAGCTGCAACTGCTGTTTTCTTGATCTA 44 Query 19158 TCCATTTGGTCAAGGTTCCTTTAGCGACGCTATGCCT 19194 ||| |||||||||| |||| || | ||||||| Sbjct 43 CCCAATTGGTCAAGGAAGCTTTTCTGATGGTATGCCT 7 >seq300680 Length=3790 Score = 183 bits (202), Expect = 9e-42 Identities = 227/308 (74%), Gaps = 2/308 (1%) Strand=Plus/Minus Query 19188 TATGCCTTTGGGTATTAGTGGTACGTTCAACTACATGCTTGTATTCCAGGCTGAACATAA 19247 ||||||| | || ||| |||||| ||||||| |||| |||||||||||| ||| || || Sbjct 659 TATGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATTGTATTCCAGGTTGAGCACAA 600 Query 19248 CATCCTCATGCACCCGTTCCACATGCTCGGTGTCGCTGGTGTGTTCGGCGGGTCACTATT 19307 ||| || |||||||| || |||||||| | || |||||||| ||| | | || ||||| Sbjct 599 CATTCTTATGCACCCATTTCACATGCTAAGCGTAGCTGGTGTACTCGTCAGCTCCCTATT 540 Query 19308 TAGTGCGATGCACGGTTCGCTTGTTACGTCCTCGCTTGTGCGTGAAACTACTGAAGAGGT 19367 || ||| ||||| ||||| |||| || || | || | ||||| | ||| | | Sbjct 539 TAATGCTATGCATGGTTC-CTTGGTAACCTCTAGTTTAATCAGGAAACCAGAGAAAATGA 481 Query 19368 ATCTCAGAACTATGGCTACAAGTTTGGGCAAGAAGAAG-AGACTTATAACATTGTTGCTG 19426 || | || | || ||||| || || |||||||||| | |||||||| || || || | Sbjct 480 ATTTGCTAATGAAGGTTACAAATTCGGTCAAGAAGAAGAAAACTTATAATATCGTAGCCG 421 Query 19427 CTCATGGGTATTTTGGTCGGCTTATTTTCCAGTACGCATCCTTCAACAATAGCCGTTCTC 19486 ||||||| |||||||| || | | |||||||| || |||||||| |||||| Sbjct 420 CTCATGGTTATTTTGGCCGATTGGTCTTCCAGTATGCTAGTTTCAACAACTCTCGTTCTT 361 Query 19487 TACATTTC 19494 |||||||| Sbjct 360 TACATTTC 353 >seq250312 Length=8481 Score = 179 bits (198), Expect = 1e-40 Identities = 323/468 (69%), Gaps = 13/468 (3%) Strand=Plus/Plus Query 19235 AGGCTGAACATAACATCCTCATGCACCCGTTCCACATGCTCGGTGTCGCTGGTGTGTTCG 19294 ||| ||| || ||||| || | |||| | || |||||||| || || |||||||| | | Sbjct 1569 AGGTTGAGCACAACATTCTTAGGCACTCATTTCACATGCTAGGCGTAGCTGGTGTAATTG 1628 Query 19295 GCGGGTCACTATTTAGTGCGATGCACGGTTCGCTTGTTACGTCCTCGCTTGTGC-GTGAA 19353 || | || ||||| ||||| |||| ||||| |||| || ||| | ||| | | ||| Sbjct 1629 GCAGCTCCCTATTCAGTGCTATGCGTGGTTC-CTTGGTAACCCCTAGTTTGATCAGGGAA 1687 Query 19354 ACTACTGAAGAGGTATCTCAGAACTATGGCTACAAGTTTGGGCAAGAAGAAGAGACTTAT 19413 || || | | | || || | || || | || || ||||||| ||| | ||| Sbjct 1688 ACCACAAAGAATGAATAAGCTAATGAAGGTTATATATTCGGTCAAGAAGGAGAAAATTAG 1747 Query 19414 AACATTGTTGCTGCTCATGGGTATTTTGGTCGGCTTATTTTCCAGTACGCATCCTTCAAC 19473 || ||||| || |||||||| ||||||||||| | || |||| | || |||||| Sbjct 1748 AATATTGTAGCCGCTCATGGTTATTTTGGTCGATTGATCTTCCGACATGCTAGTTTCAAC 1807 Query 19474 AATAGCCGTTCTCTACATTTCTTTTTGGCTGCTTGGCCTGTGGTTGGCATTTGGTTTGCC 19533 || |||| | |||||||||| | ||| |||||||| || |||||| Sbjct 1808 AACTCACGTTTTTTACATTTCTTCCTAGCTACTTGGCCT---------ATCTGGTTTATT 1858 Query 19534 GCCCTTGGGGTAAGCACCATGGCATTCAACTTGAATGGCTTTAACTTTAACCAGTCCCTT 19593 | | || | ||||| ||||| | |||| | ||||| |||| || | || || | Sbjct 1859 GTGTTAGGTATCAGCACTATGGCTTACAACCTAAATGGTTTTAGTTTCCATCAATCTGTA 1918 Query 19594 CTTGACAA-CAATGGTCGTGTCATTGATACTTGGGCTGACATTCTCAATCGTGCTAACCT 19652 | |||| ||||| || ||| ||| ||||||||||||| || | || |||||||||| Sbjct 1919 GTCGACAGTCAATG-TCATGTAATTAATACTTGGGCTGATATCATTAACTGTGCTAACCT 1977 Query 19653 CGGCTTTGAGGTAATGCACGAACGTAATGCTCATAACTTCCCACTTGA 19700 || | || || ||| | ||| ||||||||||||| ||||| || || Sbjct 1978 TGGTATGGAAGTTATGTATGAATGTAATGCTCATAATTTCCCTCTAGA 2025 >seq10884 Length=5042 Score = 136 bits (150), Expect = 1e-27 Identities = 113/138 (82%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 19188 TATGCCTTTGGGTATTAGTGGTACGTTCAACTACATGCTTGTATTCCAGGCTGAACATAA 19247 ||||||| | || ||| |||||| ||||||| |||| |||||||||||||||| || || Sbjct 3800 TATGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCACAA 3859 Query 19248 CATCCTCATGCACCCGTTCCACATGCTCGGTGTCGCTGGTGTGTTCGGCGGGTCACTATT 19307 ||| || |||||||| || |||||||| || || |||||||| |||||||| || ||||| Sbjct 3860 CATTCTTATGCACCCATTTCACATGCTAGGCGTAGCTGGTGTATTCGGCGGCTCCCTATT 3919 Query 19308 TAGTGCGATGCACGGTTC 19325 | ||| || || ||||| Sbjct 3920 CATTGCTATACATGGTTC 3937 >seq8631 Length=609 Score = 132 bits (146), Expect = 1e-26 Identities = 119/147 (81%), Gaps = 2/147 (1%) Strand=Plus/Minus Query 19188 TATGCCTTTGGGTATTAGTGGTACGTTCAACTACATGCTTGTATTCCAGGCTGAACATAA 19247 ||||||| | || ||| |||||| ||||||| |||| ||||||||||||| || || || Sbjct 324 TATGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATTGTATTCCAGGCCGAGCACAA 265 Query 19248 CATCCTCATGCACCCGTTCCACATGCTCGGTGTCGCTGGTGTGTTCGGCGGGTCACT-AT 19306 ||| || |||||||| || |||||||| | || |||||||| |||||||| || || || Sbjct 264 CATTCTTATGCACCCATTTCACATGCTAGACGTAGCTGGTGTATTCGGCGGCTCCCTAAT 205 Query 19307 TTAGTGCGATGCACGGTTCGCTTGTTA 19333 | ||||| ||||| ||||| |||| || Sbjct 204 TCAGTGCTATGCATGGTTC-CTTGGTA 179 Score = 93.3 bits (102), Expect = 1e-14 Identities = 114/156 (73%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 18949 CACTTCTACCCAATTTGGGAAGCTAATTCACTTGATGAATGGCTCTACAACGGGGGACCG 19008 || || |||||||| |||||||| || ||||||||||| | ||||| || || || Sbjct 497 CATTTTTACCCAATATGGGAAGCAGCATCCATTGATGAATGGTTATACAATGGTGGTCCT 438 Query 19009 TTCCAACTTGTGGTCTTCCACTTCCTCATTGGCGTCTATGCTTACATGGGACGCGAGTGG 19068 | |||| | || | |||||| | |||| || | ||||||||| || |||||| Sbjct 437 TATGAACTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGG 378 Query 19069 GAACTTAGCTATCGACTAGGGATGCGCCCTTGGATT 19104 |||||||| | || || | ||||||||||||||| Sbjct 377 GAACTTAGTTTCCGTCTGGATATGCGCCCTTGGATT 342 >seq36621 Length=13842 Score = 109 bits (120), Expect = 2e-19 Identities = 211/308 (69%), Gaps = 5/308 (2%) Strand=Plus/Minus Query 19402 GAAGAGACTTATAACATTGTTGCTGCTCATGGGTATTTTGGTCGGCTTATTTTCCAGTAC 19461 ||||| |||||||| || || ||||||||| ||||| | | | | || ||| | || Sbjct 7968 GAAGAAACTTATAATATCGTATATGCTCATGGTTATTTGGCT-GATTGATCTTCTAATAT 7910 Query 19462 GCATCCTTCAACAATAGCCGTTCTCTACATTTCTTTTTGGCTGCTTGGCCTGTGGTTGGC 19521 || |||||| | | || | || |||| ||| | |||||||||||||| |||| Sbjct 7909 GCTAGTTTCAACGACTCTCATTTTATATATTTTTTTCTAGCTGCTTGGCCTGTTTTTGGT 7850 Query 19522 ATTTGGTTTGCCGCCCTTGGGGTA--AGCACCATGGCATTCAACTTGAATGGCTTTAACT 19579 || ||||| | || | ||||| |||| ||||| |||||| | ||||| | || Sbjct 7849 ATATGGTTCACTGCGTT--GGGTACTAGCATTATGGCTTTCAACCTAAATGGTTGAAATC 7792 Query 19580 TTAACCAGTCCCTTCTTGACAACAATGGTCGTGTCATTGATACTTGGGCTGACATTCTCA 19639 ||||| | | |||| | | | ||||| || ||||||| | ||| || | Sbjct 7791 GAAACCAATTGGTAGTTGATAGTCACAGCCGTGTAATGAATACTTGAGGTGATATCAGTA 7732 Query 19640 ATCGTGCTAACCTCGGCTTTGAGGTAATGCACGAACGTAATGCTCATAACTTCCCACTTG 19699 | | ||||||||| | | | || ||||| ||||||||||||||||| | ||| || | Sbjct 7731 ACCATGCTAACCTTGTTATGAATGTTATGCATGAACGTAATGCTCATAATTCCCCTCTAG 7672 Query 19700 ATTTGGCT 19707 | |||||| Sbjct 7671 ACTTGGCT 7664 >seq254652 Length=6058 Score = 96.9 bits (106), Expect = 1e-15 Identities = 174/253 (69%), Gaps = 1/253 (0%) Strand=Plus/Plus Query 18885 TCTTCTTTATGGAAACAACATCATATCGGGAGCCGTCGTTCCGAGCAGCAATGCCATCGG 18944 ||| |||||||||||||| || || || || | || |||| | | || | || Sbjct 704 TCTACTTTATGGAAACAATATTATTTCAGGTGTTGTTATTCCTACTTCTACAGCTACAGG 763 Query 18945 ACTACACTTCTACCCAATTTGGGAAGCTAATTCACTTGATGAATGGCTC-TACAACGGGG 19003 | || || |||| ||| | |||||| | | ||||||||||| | ||||| || | Sbjct 764 TTTGCATTTTTACCTAATATAGGAAGCAACATTTGTTGATGAATGGTTTATACAATGGTG 823 Query 19004 GACCGTTCCAACTTGTGGTCTTCCACTTCCTCATTGGCGTCTATGCTTACATGGGACGCG 19063 | || | |||| | || | |||||| | |||| || ||||||||| |||| Sbjct 824 GTCCTTATGAACTAATTGTACTACACTTCTTACTTGGTGTAGCGTGTTACATGGGTCGCG 883 Query 19064 AGTGGGAACTTAGCTATCGACTAGGGATGCGCCCTTGGATTTGTGTTGCCTACTCAGCTC 19123 ||||||||||||| | || || || |||| |||| |||| |||||| || ||||||| Sbjct 884 AGTGGGAACTTAGTTTCCGTCTGGGTGTGCGACCTTTGATTGTTGTTGCATATTCAGCTC 943 Query 19124 CTGTTGCCGCAGC 19136 || || | || || Sbjct 944 CTATTACAGCTGC 956 >seq138223 Length=10580 Score = 87.8 bits (96), Expect = 5e-13 Identities = 172/252 (68%), Gaps = 17/252 (7%) Strand=Plus/Minus Query 19047 TGCTTACATGGGACGCGAGTGGGAACTTAGCTATCGACTAGGGATGCGCCCTTGGATTTG 19106 || ||||||| | | ||||||||||||| | || ||||| ||| | | |||||||| Sbjct 404 TGGTTACATGAGTCATGAGTGGGAACTTATTTTTCATCTAGGTATGAGACATTGGATTTC 345 Query 19107 TGTTGCCTACTCAGCTCCTGTTGCCGCAGCCTCTGCGGTCTTCCTTGTCTATCCATTTGG 19166 | |||| || | |||||||||||| | | ||| || ||| | |||| ||| |||| Sbjct 344 TTTTGCATATTTAGCTCCTGTTGCAACTGGGACTGTTGTTTTCTTAATCTACCCAATTGG 285 Query 19167 TCAAGGTTCCTTTAGCGAC-GCTATGCCTTTGGGTATTAGTGGTACGTTCAACTAC---- 19221 |||||| || | | | | ||||||| | || ||| || || || || | | Sbjct 284 TCAAGGAACCAT----GTCTGGTATGCCTCTAGGAATT-TTGATATCTTGAAATTCATTA 230 Query 19222 ----ATGCTTGTATTCCAGGCTGAACATAACATCCTCATGCACCCGTTCCACATGCTCGG 19277 || |||||||| ||| ||||| |||| |||||||| || |||||| | || Sbjct 229 TTGTATATTTGTATTCTAGGTCGAACACAACA---ATATGCACCCATTTCACATGTTAGG 173 Query 19278 TGTCGCTGGTGT 19289 || || ||||| Sbjct 172 AGTAGCCGGTGT 161 >seq92275 Length=5108 Score = 87.8 bits (96), Expect = 5e-13 Identities = 122/169 (72%), Gaps = 2/169 (1%) Strand=Plus/Minus Query 18759 TTATATCGGCTGGTTTGGAACACTGATGATTCCGTGTCTCCTTGCAGCTACTATTTGT-T 18817 || || ||| |||||||| ||||||| || || | | || ||| | ||| | Sbjct 4795 TTCTANCGGATGGTTTGGTGTTTTGATGATCCCTACCCTATTGACCGCAACT-TCTGTAT 4737 Query 18818 TCATTATTGCCTTCATTGCTGCACCTCCTGTAGACATTGATGGCATCCGCGAGCCTGTTG 18877 | |||||||||||||||| ||| ||||| ||||| |||||||| || || || |||||| Sbjct 4736 TTATTATTGCCTTCATTGATGCTCCTCCAGTAGATATTGATGGTATTCGTGAACCTGTTT 4677 Query 18878 CAGGCAGTCTTCTTTATGGAAACAACATCATATCGGGAGCCGTCGTTCC 18926 | || ||| ||||| | ||| || || || ||||| ||| | |||| Sbjct 4676 CTGGATCTCTACTTTACGAAAATAATATTATCTCGGGTGCCATTATTCC 4628 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 140371227669348