Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Carthamus_20tinctorius_20[genbank_20GCA_5F001633085.1_202016-04-27]
463,906 sequences; 661,937,708 total letters
Query= NC_025464.1
Length=44147
Score E
Sequences producing significant alignments: (Bits) Value
seq107965 336 6e-88
seq169634 223 1e-53
seq300680 183 9e-42
seq250312 179 1e-40
seq10884 136 1e-27
seq8631 132 1e-26
seq36621 109 2e-19
seq254652 96.9 1e-15
seq138223 87.8 5e-13
seq92275 87.8 5e-13
>seq107965
Length=6474
Score = 336 bits (372), Expect = 6e-88
Identities = 442/608 (73%), Gaps = 6/608 (1%)
Strand=Plus/Plus
Query 18886 CTTCTTTATGGAAACAACATCATATCGGGAGCCGTCGTTCCGAG--CAGCAATGCCATCG 18943
|| |||||||||||||| || || | || || | |||| | | ||| || || |
Sbjct 5870 CTGCTTTATGGAAACAATATTATTTTAGGTACCATTATTCCTATTTCTGCA--GCTATAG 5927
Query 18944 GACTACACTTCTACCCAATTTGGGAAGCTAATTCACTTGATGAATGGCTCTACAACGGGG 19003
| | || || |||||||| |||||||| | || ||||||||||| | ||||| || |
Sbjct 5928 GTTTGCATTTTTACCCAATATGGGAAGCAACATCTGTTGATGAATGGTTATACAATGGTG 5987
Query 19004 GACCGTTCCAACTTGTGGTCTTCCACTTCCTCATTGGCGTCTATGCTTACATGGGACGCG 19063
| || | |||| | || | |||||| | |||| || | ||||||||| || |
Sbjct 5988 GTCCTTATGAACTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTG 6047
Query 19064 AGTGGGAACTTAGCTATCGACTAGGGATGCGCCCTTGGATTTGTGTTGCCTACTCAGCTC 19123
||||||||||||| | ||| || || ||||| ||||||| |||||| || |||||||
Sbjct 6048 AGTGGGAACTTAGTTTTCGTCTGGGTATGCGAACTTGGATGGTTGTTGCATATTCAGCTC 6107
Query 19124 CTGTTGCCGCAGCCTCTGCGGTCTTCCTTGTCTATCCATTTGGTCAAGGTTCCTTTAGCG 19183
||||||| || || || || ||| | |||| ||| |||||||||| |||| |
Sbjct 6108 CTGTTGCAGCTGCGAGTGTTGTTTTCTTGATCTACCCAATTGGTCAAGGAAGCTTTTCTG 6167
Query 19184 ACGCTATGCCTTTGGGTATTAGTGGTACGTTCAACTACATGCTTGTATTCCAGGCTGAAC 19243
| | ||||||| | || ||| |||||| ||||||| |||| |||||||||||||||| |
Sbjct 6168 ATGGTATGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGC 6227
Query 19244 ATAACATCCTCATGCACCCGTTCCACATGCTCGGTGTCGCTGGTGTGTTCGGCGGGTCAC 19303
| ||||| || |||||||| || |||||||| ||||| |||||||| ||||||| || |
Sbjct 6228 ACAACATTCTTATGCACCCATTTCACATGCTAGGTGTAGCTGGTGTAATCGGCGGCTCCC 6287
Query 19304 TATTTAGTGCGATGCACGGTTCGCTTGTTACGTCCTCGCTTG-TGCGTGAAACTACTGAA 19362
|||| ||||| ||||| ||||| |||| || || | ||| | | ||||| || |||
Sbjct 6288 TATTCAGTGCTATGCATGGTTC-CTTGGTAACCTCTTGTTTGATCAGGGAAACCACAGAA 6346
Query 19363 GAGGTATCTCAGAACTATGGCTACAAGTTTGGGCAAGAAGAAGAGACTTATAACATTGTT 19422
| |||| || | || |||| ||||| | |||||| || |||||||| || ||
Sbjct 6347 AATAAATCTGCTAATGAAGGTTACAGATTTGGTCTAGAAGATGAAACTTATAATATCGTA 6406
Query 19423 GCTGCTCATGGGTATTTTGGTCGGCTTATTTTCCAGTACGCATCCTTCAACAATAGCCGT 19482
|| | |||||| |||||||| || | || ||||| || || |||||||| |||
Sbjct 6407 GCCGTTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCTAGTTTCAACAACTCTCGT 6466
Query 19483 TCTCTACA 19490
||| ||||
Sbjct 6467 TCTTTACA 6474
>seq169634
Length=720
Score = 223 bits (246), Expect = 1e-53
Identities = 328/457 (72%), Gaps = 8/457 (2%)
Strand=Plus/Minus
Query 18742 AGTACAGATAACCGTCTTTATATCGGCTGGTTTGGAACACTGATGATTCCGTGTCTCCTT 18801
||||| || ||||||||||| || || |||||||| ||||||| || | || ||
Sbjct 459 AGTACCGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATCCC-TACCTTATT 401
Query 18802 G-CAGCTACTATTTGT-TTCATTATTGCCTTCATTGCTGCACCTCCTGTAGACATTGATG 18859
| | || ||| | ||| || ||||| || ||||||||||| ||||| || || |||||||
Sbjct 400 GACCGCAACT-TCTGTATTTATTATCGCTTTCATTGCTGCTCCTCCAGTGGATATTGATG 342
Query 18860 GCATCCGCGAGCCTGTTGCAGGCAGTCTTCTTTATGGAAACAACATCATATCGGGAGCCG 18919
| || || || |||||| || ||| |||||||||||| || || || || | |
Sbjct 341 GTATTCGTGAACCTGTTTATGGATCTCTAAGTTATGGAAACAATATTATTTCAGGTGTCA 282
Query 18920 TCGTTCCGAG--CAGCAATGCCATCGGACTACACTTCTACCCAATTTGGGAAGCTAATTC 18977
| |||| | | ||| || || || | || || |||||||| |||||||| ||
Sbjct 281 TTATTCCTACTTCTGCA--GCTATAGGTTTGCATTTTTACCCAATATGGGAAGCAGCATC 224
Query 18978 ACTTGATGAATGGCTCTACAACGGGGGACCGTTCCAACTTGTGGTCTTCCACTTCCTCAT 19037
||||||||||| | ||||| || || || | |||| | || | |||||| | |
Sbjct 223 CGTTGATGAATGGTTATACAATGGTGGTCCTTATGAACTAATTGTTCTACACTTCTTACT 164
Query 19038 TGGCGTCTATGCTTACATGGGACGCGAGTGGGAACTTAGCTATCGACTAGGGATGCGCCC 19097
||| || | ||||||||| || |||||||||||||| | || || || ||||| ||
Sbjct 163 TGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGACC 104
Query 19098 TTGGATTTGTGTTGCCTACTCAGCTCCTGTTGCCGCAGCCTCTGCGGTCTTCCTTGTCTA 19157
||||||| |||||| || |||||| ||||||| || || |||| || ||| | ||||
Sbjct 103 TTGGATTGTTGTTGCATATTCAGCTTCTGTTGCAGCTGCAACTGCTGTTTTCTTGATCTA 44
Query 19158 TCCATTTGGTCAAGGTTCCTTTAGCGACGCTATGCCT 19194
||| |||||||||| |||| || | |||||||
Sbjct 43 CCCAATTGGTCAAGGAAGCTTTTCTGATGGTATGCCT 7
>seq300680
Length=3790
Score = 183 bits (202), Expect = 9e-42
Identities = 227/308 (74%), Gaps = 2/308 (1%)
Strand=Plus/Minus
Query 19188 TATGCCTTTGGGTATTAGTGGTACGTTCAACTACATGCTTGTATTCCAGGCTGAACATAA 19247
||||||| | || ||| |||||| ||||||| |||| |||||||||||| ||| || ||
Sbjct 659 TATGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATTGTATTCCAGGTTGAGCACAA 600
Query 19248 CATCCTCATGCACCCGTTCCACATGCTCGGTGTCGCTGGTGTGTTCGGCGGGTCACTATT 19307
||| || |||||||| || |||||||| | || |||||||| ||| | | || |||||
Sbjct 599 CATTCTTATGCACCCATTTCACATGCTAAGCGTAGCTGGTGTACTCGTCAGCTCCCTATT 540
Query 19308 TAGTGCGATGCACGGTTCGCTTGTTACGTCCTCGCTTGTGCGTGAAACTACTGAAGAGGT 19367
|| ||| ||||| ||||| |||| || || | || | ||||| | ||| | |
Sbjct 539 TAATGCTATGCATGGTTC-CTTGGTAACCTCTAGTTTAATCAGGAAACCAGAGAAAATGA 481
Query 19368 ATCTCAGAACTATGGCTACAAGTTTGGGCAAGAAGAAG-AGACTTATAACATTGTTGCTG 19426
|| | || | || ||||| || || |||||||||| | |||||||| || || || |
Sbjct 480 ATTTGCTAATGAAGGTTACAAATTCGGTCAAGAAGAAGAAAACTTATAATATCGTAGCCG 421
Query 19427 CTCATGGGTATTTTGGTCGGCTTATTTTCCAGTACGCATCCTTCAACAATAGCCGTTCTC 19486
||||||| |||||||| || | | |||||||| || |||||||| ||||||
Sbjct 420 CTCATGGTTATTTTGGCCGATTGGTCTTCCAGTATGCTAGTTTCAACAACTCTCGTTCTT 361
Query 19487 TACATTTC 19494
||||||||
Sbjct 360 TACATTTC 353
>seq250312
Length=8481
Score = 179 bits (198), Expect = 1e-40
Identities = 323/468 (69%), Gaps = 13/468 (3%)
Strand=Plus/Plus
Query 19235 AGGCTGAACATAACATCCTCATGCACCCGTTCCACATGCTCGGTGTCGCTGGTGTGTTCG 19294
||| ||| || ||||| || | |||| | || |||||||| || || |||||||| | |
Sbjct 1569 AGGTTGAGCACAACATTCTTAGGCACTCATTTCACATGCTAGGCGTAGCTGGTGTAATTG 1628
Query 19295 GCGGGTCACTATTTAGTGCGATGCACGGTTCGCTTGTTACGTCCTCGCTTGTGC-GTGAA 19353
|| | || ||||| ||||| |||| ||||| |||| || ||| | ||| | | |||
Sbjct 1629 GCAGCTCCCTATTCAGTGCTATGCGTGGTTC-CTTGGTAACCCCTAGTTTGATCAGGGAA 1687
Query 19354 ACTACTGAAGAGGTATCTCAGAACTATGGCTACAAGTTTGGGCAAGAAGAAGAGACTTAT 19413
|| || | | | || || | || || | || || ||||||| ||| | |||
Sbjct 1688 ACCACAAAGAATGAATAAGCTAATGAAGGTTATATATTCGGTCAAGAAGGAGAAAATTAG 1747
Query 19414 AACATTGTTGCTGCTCATGGGTATTTTGGTCGGCTTATTTTCCAGTACGCATCCTTCAAC 19473
|| ||||| || |||||||| ||||||||||| | || |||| | || ||||||
Sbjct 1748 AATATTGTAGCCGCTCATGGTTATTTTGGTCGATTGATCTTCCGACATGCTAGTTTCAAC 1807
Query 19474 AATAGCCGTTCTCTACATTTCTTTTTGGCTGCTTGGCCTGTGGTTGGCATTTGGTTTGCC 19533
|| |||| | |||||||||| | ||| |||||||| || ||||||
Sbjct 1808 AACTCACGTTTTTTACATTTCTTCCTAGCTACTTGGCCT---------ATCTGGTTTATT 1858
Query 19534 GCCCTTGGGGTAAGCACCATGGCATTCAACTTGAATGGCTTTAACTTTAACCAGTCCCTT 19593
| | || | ||||| ||||| | |||| | ||||| |||| || | || || |
Sbjct 1859 GTGTTAGGTATCAGCACTATGGCTTACAACCTAAATGGTTTTAGTTTCCATCAATCTGTA 1918
Query 19594 CTTGACAA-CAATGGTCGTGTCATTGATACTTGGGCTGACATTCTCAATCGTGCTAACCT 19652
| |||| ||||| || ||| ||| ||||||||||||| || | || ||||||||||
Sbjct 1919 GTCGACAGTCAATG-TCATGTAATTAATACTTGGGCTGATATCATTAACTGTGCTAACCT 1977
Query 19653 CGGCTTTGAGGTAATGCACGAACGTAATGCTCATAACTTCCCACTTGA 19700
|| | || || ||| | ||| ||||||||||||| ||||| || ||
Sbjct 1978 TGGTATGGAAGTTATGTATGAATGTAATGCTCATAATTTCCCTCTAGA 2025
>seq10884
Length=5042
Score = 136 bits (150), Expect = 1e-27
Identities = 113/138 (82%), Gaps = 0/138 (0%)
Strand=Plus/Plus
Query 19188 TATGCCTTTGGGTATTAGTGGTACGTTCAACTACATGCTTGTATTCCAGGCTGAACATAA 19247
||||||| | || ||| |||||| ||||||| |||| |||||||||||||||| || ||
Sbjct 3800 TATGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCACAA 3859
Query 19248 CATCCTCATGCACCCGTTCCACATGCTCGGTGTCGCTGGTGTGTTCGGCGGGTCACTATT 19307
||| || |||||||| || |||||||| || || |||||||| |||||||| || |||||
Sbjct 3860 CATTCTTATGCACCCATTTCACATGCTAGGCGTAGCTGGTGTATTCGGCGGCTCCCTATT 3919
Query 19308 TAGTGCGATGCACGGTTC 19325
| ||| || || |||||
Sbjct 3920 CATTGCTATACATGGTTC 3937
>seq8631
Length=609
Score = 132 bits (146), Expect = 1e-26
Identities = 119/147 (81%), Gaps = 2/147 (1%)
Strand=Plus/Minus
Query 19188 TATGCCTTTGGGTATTAGTGGTACGTTCAACTACATGCTTGTATTCCAGGCTGAACATAA 19247
||||||| | || ||| |||||| ||||||| |||| ||||||||||||| || || ||
Sbjct 324 TATGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATTGTATTCCAGGCCGAGCACAA 265
Query 19248 CATCCTCATGCACCCGTTCCACATGCTCGGTGTCGCTGGTGTGTTCGGCGGGTCACT-AT 19306
||| || |||||||| || |||||||| | || |||||||| |||||||| || || ||
Sbjct 264 CATTCTTATGCACCCATTTCACATGCTAGACGTAGCTGGTGTATTCGGCGGCTCCCTAAT 205
Query 19307 TTAGTGCGATGCACGGTTCGCTTGTTA 19333
| ||||| ||||| ||||| |||| ||
Sbjct 204 TCAGTGCTATGCATGGTTC-CTTGGTA 179
Score = 93.3 bits (102), Expect = 1e-14
Identities = 114/156 (73%), Gaps = 0/156 (0%)
Strand=Plus/Minus
Query 18949 CACTTCTACCCAATTTGGGAAGCTAATTCACTTGATGAATGGCTCTACAACGGGGGACCG 19008
|| || |||||||| |||||||| || ||||||||||| | ||||| || || ||
Sbjct 497 CATTTTTACCCAATATGGGAAGCAGCATCCATTGATGAATGGTTATACAATGGTGGTCCT 438
Query 19009 TTCCAACTTGTGGTCTTCCACTTCCTCATTGGCGTCTATGCTTACATGGGACGCGAGTGG 19068
| |||| | || | |||||| | |||| || | ||||||||| || ||||||
Sbjct 437 TATGAACTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGG 378
Query 19069 GAACTTAGCTATCGACTAGGGATGCGCCCTTGGATT 19104
|||||||| | || || | |||||||||||||||
Sbjct 377 GAACTTAGTTTCCGTCTGGATATGCGCCCTTGGATT 342
>seq36621
Length=13842
Score = 109 bits (120), Expect = 2e-19
Identities = 211/308 (69%), Gaps = 5/308 (2%)
Strand=Plus/Minus
Query 19402 GAAGAGACTTATAACATTGTTGCTGCTCATGGGTATTTTGGTCGGCTTATTTTCCAGTAC 19461
||||| |||||||| || || ||||||||| ||||| | | | | || ||| | ||
Sbjct 7968 GAAGAAACTTATAATATCGTATATGCTCATGGTTATTTGGCT-GATTGATCTTCTAATAT 7910
Query 19462 GCATCCTTCAACAATAGCCGTTCTCTACATTTCTTTTTGGCTGCTTGGCCTGTGGTTGGC 19521
|| |||||| | | || | || |||| ||| | |||||||||||||| ||||
Sbjct 7909 GCTAGTTTCAACGACTCTCATTTTATATATTTTTTTCTAGCTGCTTGGCCTGTTTTTGGT 7850
Query 19522 ATTTGGTTTGCCGCCCTTGGGGTA--AGCACCATGGCATTCAACTTGAATGGCTTTAACT 19579
|| ||||| | || | ||||| |||| ||||| |||||| | ||||| | ||
Sbjct 7849 ATATGGTTCACTGCGTT--GGGTACTAGCATTATGGCTTTCAACCTAAATGGTTGAAATC 7792
Query 19580 TTAACCAGTCCCTTCTTGACAACAATGGTCGTGTCATTGATACTTGGGCTGACATTCTCA 19639
||||| | | |||| | | | ||||| || ||||||| | ||| || |
Sbjct 7791 GAAACCAATTGGTAGTTGATAGTCACAGCCGTGTAATGAATACTTGAGGTGATATCAGTA 7732
Query 19640 ATCGTGCTAACCTCGGCTTTGAGGTAATGCACGAACGTAATGCTCATAACTTCCCACTTG 19699
| | ||||||||| | | | || ||||| ||||||||||||||||| | ||| || |
Sbjct 7731 ACCATGCTAACCTTGTTATGAATGTTATGCATGAACGTAATGCTCATAATTCCCCTCTAG 7672
Query 19700 ATTTGGCT 19707
| ||||||
Sbjct 7671 ACTTGGCT 7664
>seq254652
Length=6058
Score = 96.9 bits (106), Expect = 1e-15
Identities = 174/253 (69%), Gaps = 1/253 (0%)
Strand=Plus/Plus
Query 18885 TCTTCTTTATGGAAACAACATCATATCGGGAGCCGTCGTTCCGAGCAGCAATGCCATCGG 18944
||| |||||||||||||| || || || || | || |||| | | || | ||
Sbjct 704 TCTACTTTATGGAAACAATATTATTTCAGGTGTTGTTATTCCTACTTCTACAGCTACAGG 763
Query 18945 ACTACACTTCTACCCAATTTGGGAAGCTAATTCACTTGATGAATGGCTC-TACAACGGGG 19003
| || || |||| ||| | |||||| | | ||||||||||| | ||||| || |
Sbjct 764 TTTGCATTTTTACCTAATATAGGAAGCAACATTTGTTGATGAATGGTTTATACAATGGTG 823
Query 19004 GACCGTTCCAACTTGTGGTCTTCCACTTCCTCATTGGCGTCTATGCTTACATGGGACGCG 19063
| || | |||| | || | |||||| | |||| || ||||||||| ||||
Sbjct 824 GTCCTTATGAACTAATTGTACTACACTTCTTACTTGGTGTAGCGTGTTACATGGGTCGCG 883
Query 19064 AGTGGGAACTTAGCTATCGACTAGGGATGCGCCCTTGGATTTGTGTTGCCTACTCAGCTC 19123
||||||||||||| | || || || |||| |||| |||| |||||| || |||||||
Sbjct 884 AGTGGGAACTTAGTTTCCGTCTGGGTGTGCGACCTTTGATTGTTGTTGCATATTCAGCTC 943
Query 19124 CTGTTGCCGCAGC 19136
|| || | || ||
Sbjct 944 CTATTACAGCTGC 956
>seq138223
Length=10580
Score = 87.8 bits (96), Expect = 5e-13
Identities = 172/252 (68%), Gaps = 17/252 (7%)
Strand=Plus/Minus
Query 19047 TGCTTACATGGGACGCGAGTGGGAACTTAGCTATCGACTAGGGATGCGCCCTTGGATTTG 19106
|| ||||||| | | ||||||||||||| | || ||||| ||| | | ||||||||
Sbjct 404 TGGTTACATGAGTCATGAGTGGGAACTTATTTTTCATCTAGGTATGAGACATTGGATTTC 345
Query 19107 TGTTGCCTACTCAGCTCCTGTTGCCGCAGCCTCTGCGGTCTTCCTTGTCTATCCATTTGG 19166
| |||| || | |||||||||||| | | ||| || ||| | |||| ||| ||||
Sbjct 344 TTTTGCATATTTAGCTCCTGTTGCAACTGGGACTGTTGTTTTCTTAATCTACCCAATTGG 285
Query 19167 TCAAGGTTCCTTTAGCGAC-GCTATGCCTTTGGGTATTAGTGGTACGTTCAACTAC---- 19221
|||||| || | | | | ||||||| | || ||| || || || || | |
Sbjct 284 TCAAGGAACCAT----GTCTGGTATGCCTCTAGGAATT-TTGATATCTTGAAATTCATTA 230
Query 19222 ----ATGCTTGTATTCCAGGCTGAACATAACATCCTCATGCACCCGTTCCACATGCTCGG 19277
|| |||||||| ||| ||||| |||| |||||||| || |||||| | ||
Sbjct 229 TTGTATATTTGTATTCTAGGTCGAACACAACA---ATATGCACCCATTTCACATGTTAGG 173
Query 19278 TGTCGCTGGTGT 19289
|| || |||||
Sbjct 172 AGTAGCCGGTGT 161
>seq92275
Length=5108
Score = 87.8 bits (96), Expect = 5e-13
Identities = 122/169 (72%), Gaps = 2/169 (1%)
Strand=Plus/Minus
Query 18759 TTATATCGGCTGGTTTGGAACACTGATGATTCCGTGTCTCCTTGCAGCTACTATTTGT-T 18817
|| || ||| |||||||| ||||||| || || | | || ||| | ||| |
Sbjct 4795 TTCTANCGGATGGTTTGGTGTTTTGATGATCCCTACCCTATTGACCGCAACT-TCTGTAT 4737
Query 18818 TCATTATTGCCTTCATTGCTGCACCTCCTGTAGACATTGATGGCATCCGCGAGCCTGTTG 18877
| |||||||||||||||| ||| ||||| ||||| |||||||| || || || ||||||
Sbjct 4736 TTATTATTGCCTTCATTGATGCTCCTCCAGTAGATATTGATGGTATTCGTGAACCTGTTT 4677
Query 18878 CAGGCAGTCTTCTTTATGGAAACAACATCATATCGGGAGCCGTCGTTCC 18926
| || ||| ||||| | ||| || || || ||||| ||| | ||||
Sbjct 4676 CTGGATCTCTACTTTACGAAAATAATATTATCTCGGGTGCCATTATTCC 4628
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 140371227669348
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