Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Carthamus_20tinctorius_20[genbank_20GCA_5F001633085.1_202016-04-27]
463,906 sequences; 661,937,708 total letters
Query= NC_025960.1
Length=148981
Score E
Sequences producing significant alignments: (Bits) Value
seq293582 93.3 4e-14
seq156932 89.7 5e-13
>seq293582
Length=2029
Score = 93.3 bits (102), Expect = 4e-14
Identities = 329/500 (66%), Gaps = 18/500 (4%)
Strand=Plus/Minus
Query 46776 AAGGCCCAGTGGGCCATGAAGTGGATCGAGAGCGAGACCGCCACGCTGGCCGAGCGCATG 46835
||||||||||||||| | |||||||| || | ||| | | || ||||| ||
Sbjct 1499 AAGGCCCAGTGGGCCCTCCGCTGGATCGA---CGGGTCCGAGTCCTTCGCGGAGCGGATC 1443
Query 46836 GTGGCATTCGCGATAGTCGAAGGCGTGtttttttCGGGCAGTTTTGCCGCCATTTTTTAC 46895
|| || ||||| ||||| ||| | || || || || || || |||||| || |
Sbjct 1442 GTCGCCTTCGCCTGTGTCGAGGGCATCTTCTTCTCCGGAAGCTTCTGCGCCATCTTCTGG 1383
Query 46896 ATTAAAACCAAAGGCATAATGCCGGGCCTGACGTTCAGTAACGAGTTGATCTCGCGCGAC 46955
| || | ||| | ||||||||||| |||||| ||||| ||||||||| | |||
Sbjct 1382 CTCAAGAAGCGCGGCCTGATGCCGGGCCTAACGTTCTCCAACGAATTGATCTCGAGGGAC 1323
Query 46956 GAAGGACTACACACGGACTTTGCGTGTCTCTAT-TACAAGACGCGCGTGAATGAGAAATT 47014
||||| || ||| || || ||||| || || ||| | |||| ||| |
Sbjct 1322 GAAGGCCTGCACTGCGATTTCGCGTG-CTTGATCTACGGTTTG---TTGAACATGAAGCT 1267
Query 47015 AAACTCGGACACGATCCTGAGCATGTTTAGGGAGGCGGTGAGCATCGAAAAGGAGTTTTT 47074
| | ||| | | || || | ||| |||||| ||||| | ||||||| |
Sbjct 1266 GAGCGAGGAGCGGGTTAAGAAGATTGTGGCGGACGCGGTGGAGATCGAGAGGGAGTTTGT 1207
Query 47075 TACTGCG--GCGCTGCC-CGTCGCCTTGCTGGGCATGAACGCACAGTCT-ATGTGCGAAT 47130
|||| |||||||| || | | || |||| ||||||| | ||| ||| || |
Sbjct 1206 --GTGCGACGCGCTGCCGTGTGGTC-TGGTGGGGATGAACG-GCGATCTGATGAGCACGT 1151
Query 47131 ATATTGAGTTTGTGGCGGATCGTCTGTTGGTGCAGCTCGGACAACCGAAATAT-TTTAAT 47189
|||| ||||| ||||||||||| |||||||| | | || || | || || | ||
Sbjct 1150 ATATCGAGTTCGTGGCGGATCGGTTGTTGGTGGCG-TTGGGGTACGGGAAGATGTACAAG 1092
Query 47190 GCTCGTAATCCGTTTGAGTTTATGAACAACATTTCGCTCGAGGGCAAAACCAATTTTTTC 47249
| | ||||||||||| | ||| | |||||| | |||| || || || || |||
Sbjct 1091 GTGCAGAATCCGTTTGATTGGATGGAGCTGATTTCGTTGCAGGGGAAGACGAACTTCTTC 1032
Query 47250 GAGAAACGAGTCGGAGAGTA 47269
||||| | || || |||||
Sbjct 1031 GAGAAGAGGGTTGGGGAGTA 1012
>seq156932
Length=6713
Score = 89.7 bits (98), Expect = 5e-13
Identities = 145/209 (69%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 131915 ACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCG 131974
||||| || | | | ||||| ||||| |||||||||||| | || || || |||
Sbjct 4231 ACCAAGTGGAGGGTGGACTCCTTTTGGATGTTGTAGTCGGCTAGAGTTCGGCCGTCCTCG 4290
Query 131975 AGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTA 132034
||||||||||||| | |||| || | ||| ||||||||||| || ||||| || ||
Sbjct 4291 AGCTGTTTACCGGCAAAGATCAGCCTCTGCTGATCTGGAGGAATCCCTTCCTTGTCTTGG 4350
Query 132035 ATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTA 132094
|| || || | | || | ||||||| ||| || |||| || | || ||
Sbjct 4351 ATCTTGGCCTTGACGTTGTCAATTGTATCGGAACTCTCGACCTCGAGAGTGATGGTCTTG 4410
Query 132095 CCAGTCAGAGTTTTTATGAAAATCTGCAT 132123
||||| || || || | ||| ||||||||
Sbjct 4411 CCAGTGAGGGTCTTAACGAATATCTGCAT 4439
Score = 87.8 bits (96), Expect = 2e-12
Identities = 138/195 (71%), Gaps = 2/195 (1%)
Strand=Plus/Plus
Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATG-GTACGCGAATCTTCGAGCTGTTTACCGGA 131988
|| || || || |||||||| || | || | || ||| |||||| |||||||| ||||
Sbjct 3790 GATTCCTTCTGGATGTTGTAATC-CGCAAGAGTCCGCCCATCTTCCAGCTGTTTTCCGGC 3848
Query 131989 ATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAA 132048
| |||| || | ||||| ||||| || || ||||| || || ||| || |||||
Sbjct 3849 AAAGATGAGTCTTTGTTGGTCTGGTGGGATTCCTTCCTTGTCTTGAATCTTGGCTTTCAC 3908
Query 132049 CTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 132108
| || | ||||| | ||| ||||| | || | ||| || ||||| || |||||
Sbjct 3909 GTTGTCGATGGTATCCGAGCTCTCGACTTCCAAAGTGATCGTCTTCCCAGTGAGGGTTTT 3968
Query 132109 TATGAAAATCTGCAT 132123
| ||||||||||||
Sbjct 3969 GACGAAAATCTGCAT 3983
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 473847415058160
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |