Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carthamus_20tinctorius_20[genbank_20GCA_5F001633085.1_202016-04-27] 463,906 sequences; 661,937,708 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq293582 93.3 4e-14 seq156932 89.7 5e-13 >seq293582 Length=2029 Score = 93.3 bits (102), Expect = 4e-14 Identities = 329/500 (66%), Gaps = 18/500 (4%) Strand=Plus/Minus Query 46776 AAGGCCCAGTGGGCCATGAAGTGGATCGAGAGCGAGACCGCCACGCTGGCCGAGCGCATG 46835 ||||||||||||||| | |||||||| || | ||| | | || ||||| || Sbjct 1499 AAGGCCCAGTGGGCCCTCCGCTGGATCGA---CGGGTCCGAGTCCTTCGCGGAGCGGATC 1443 Query 46836 GTGGCATTCGCGATAGTCGAAGGCGTGtttttttCGGGCAGTTTTGCCGCCATTTTTTAC 46895 || || ||||| ||||| ||| | || || || || || || |||||| || | Sbjct 1442 GTCGCCTTCGCCTGTGTCGAGGGCATCTTCTTCTCCGGAAGCTTCTGCGCCATCTTCTGG 1383 Query 46896 ATTAAAACCAAAGGCATAATGCCGGGCCTGACGTTCAGTAACGAGTTGATCTCGCGCGAC 46955 | || | ||| | ||||||||||| |||||| ||||| ||||||||| | ||| Sbjct 1382 CTCAAGAAGCGCGGCCTGATGCCGGGCCTAACGTTCTCCAACGAATTGATCTCGAGGGAC 1323 Query 46956 GAAGGACTACACACGGACTTTGCGTGTCTCTAT-TACAAGACGCGCGTGAATGAGAAATT 47014 ||||| || ||| || || ||||| || || ||| | |||| ||| | Sbjct 1322 GAAGGCCTGCACTGCGATTTCGCGTG-CTTGATCTACGGTTTG---TTGAACATGAAGCT 1267 Query 47015 AAACTCGGACACGATCCTGAGCATGTTTAGGGAGGCGGTGAGCATCGAAAAGGAGTTTTT 47074 | | ||| | | || || | ||| |||||| ||||| | ||||||| | Sbjct 1266 GAGCGAGGAGCGGGTTAAGAAGATTGTGGCGGACGCGGTGGAGATCGAGAGGGAGTTTGT 1207 Query 47075 TACTGCG--GCGCTGCC-CGTCGCCTTGCTGGGCATGAACGCACAGTCT-ATGTGCGAAT 47130 |||| |||||||| || | | || |||| ||||||| | ||| ||| || | Sbjct 1206 --GTGCGACGCGCTGCCGTGTGGTC-TGGTGGGGATGAACG-GCGATCTGATGAGCACGT 1151 Query 47131 ATATTGAGTTTGTGGCGGATCGTCTGTTGGTGCAGCTCGGACAACCGAAATAT-TTTAAT 47189 |||| ||||| ||||||||||| |||||||| | | || || | || || | || Sbjct 1150 ATATCGAGTTCGTGGCGGATCGGTTGTTGGTGGCG-TTGGGGTACGGGAAGATGTACAAG 1092 Query 47190 GCTCGTAATCCGTTTGAGTTTATGAACAACATTTCGCTCGAGGGCAAAACCAATTTTTTC 47249 | | ||||||||||| | ||| | |||||| | |||| || || || || ||| Sbjct 1091 GTGCAGAATCCGTTTGATTGGATGGAGCTGATTTCGTTGCAGGGGAAGACGAACTTCTTC 1032 Query 47250 GAGAAACGAGTCGGAGAGTA 47269 ||||| | || || ||||| Sbjct 1031 GAGAAGAGGGTTGGGGAGTA 1012 >seq156932 Length=6713 Score = 89.7 bits (98), Expect = 5e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 131915 ACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCG 131974 ||||| || | | | ||||| ||||| |||||||||||| | || || || ||| Sbjct 4231 ACCAAGTGGAGGGTGGACTCCTTTTGGATGTTGTAGTCGGCTAGAGTTCGGCCGTCCTCG 4290 Query 131975 AGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTA 132034 ||||||||||||| | |||| || | ||| ||||||||||| || ||||| || || Sbjct 4291 AGCTGTTTACCGGCAAAGATCAGCCTCTGCTGATCTGGAGGAATCCCTTCCTTGTCTTGG 4350 Query 132035 ATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTA 132094 || || || | | || | ||||||| ||| || |||| || | || || Sbjct 4351 ATCTTGGCCTTGACGTTGTCAATTGTATCGGAACTCTCGACCTCGAGAGTGATGGTCTTG 4410 Query 132095 CCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 ||||| || || || | ||| |||||||| Sbjct 4411 CCAGTGAGGGTCTTAACGAATATCTGCAT 4439 Score = 87.8 bits (96), Expect = 2e-12 Identities = 138/195 (71%), Gaps = 2/195 (1%) Strand=Plus/Plus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATG-GTACGCGAATCTTCGAGCTGTTTACCGGA 131988 || || || || |||||||| || | || | || ||| |||||| |||||||| |||| Sbjct 3790 GATTCCTTCTGGATGTTGTAATC-CGCAAGAGTCCGCCCATCTTCCAGCTGTTTTCCGGC 3848 Query 131989 ATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAA 132048 | |||| || | ||||| ||||| || || ||||| || || ||| || ||||| Sbjct 3849 AAAGATGAGTCTTTGTTGGTCTGGTGGGATTCCTTCCTTGTCTTGAATCTTGGCTTTCAC 3908 Query 132049 CTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 132108 | || | ||||| | ||| ||||| | || | ||| || ||||| || ||||| Sbjct 3909 GTTGTCGATGGTATCCGAGCTCTCGACTTCCAAAGTGATCGTCTTCCCAGTGAGGGTTTT 3968 Query 132109 TATGAAAATCTGCAT 132123 | |||||||||||| Sbjct 3969 GACGAAAATCTGCAT 3983 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 473847415058160