Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Carthamus_20tinctorius_20[genbank_20GCA_5F001633085.1_202016-04-27]
463,906 sequences; 661,937,708 total letters
Query= NC_026268.1
Length=139132
Score E
Sequences producing significant alignments: (Bits) Value
seq156932 86.0 6e-12
seq25275 86.0 6e-12
>seq156932
Length=6713
Score = 86.0 bits (94), Expect = 6e-12
Identities = 155/227 (68%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234
||||| | || || ||||| | || || || ||||||| | |||||||| |
Sbjct 3983 ATGCAGATTTTCGTCAAAACCCTCACTGGGAAGACGATCACTTTGGAAGTCGAGAGCTCG 3924
Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294
||||| ||||| | || ||| || ||| || || || || || || || || ||
Sbjct 3923 GATACCATCGACAACGTGAAAGCCAAGATTCAAGACAAGGAAGGAATCCCACCAGACCAA 3864
Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354
||||||||||| | | ||| ||||| || ||||||| | | | | ||||||||
Sbjct 3863 CAAAGACTCATCTTTGCCGGAAAACAGCTGGAAGATGGGCGGACTCTTGCGGATTACAAC 3804
Query 25355 ATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGG 25401
|| || || ||||| ||| | ||| | ||| | || ||||| |||||
Sbjct 3803 ATCCAGAAGGAATCGACCCTGCATCTTGTGCTGAGGTTGAGGGGAGG 3757
>seq25275
Length=8276
Score = 86.0 bits (94), Expect = 6e-12
Identities = 155/227 (68%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234
||||| | ||||| || || || |||||||| | ||||| | ||||| || | |
Sbjct 5247 ATGCAGATCTTTGTGAAGACTTTGACCGGAAAGACCATCACACTGGAAGTTGAGAGCTCC 5306
Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294
|| || ||||| | || || ||||| ||||||||||| || || || || ||
Sbjct 5307 GACACCATCGACAACGTGAAGGCGAAAATCCAAGATAAAGAGGGAATCCCACCAGACCAA 5366
Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354
|||||| | || | | |||||| || || || |||| | | | || |||||
Sbjct 5367 CAAAGATTGATCTTTGCCGGCAAGCAGCTTGAGGATGGCCGTACCCTTGCAGACTACAAC 5426
Query 25355 ATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGG 25401
||||| || ||||| ||| |||| || ||| | |||||||||| ||
Sbjct 5427 ATTCAGAAGGAATCAACCCTTCACTTGGTGCTTCGATTGAGAGGTGG 5473
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 442513375465920
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |