Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carthamus_20tinctorius_20[genbank_20GCA_5F001633085.1_202016-04-27] 463,906 sequences; 661,937,708 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq293582 324 2e-82 seq294625 282 6e-70 >seq293582 Length=2029 Score = 324 bits (358), Expect = 2e-82 Identities = 414/561 (74%), Gaps = 11/561 (2%) Strand=Plus/Minus Query 1455753 TGTTCCCCATCCGCTACCAGCGGATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTT 1455812 ||||||| ||| |||| | || |||||||||||| |||||| |||| ||||| ||| Sbjct 1870 TGTTCCCAATCAAATACCCCCAAATCTGGGAAATGTACAAAAAAG-CCGAAGCCTCGTTT 1812 Query 1455813 TGGACCGCCGAGGAGGTCGACCTCGGCGCCG-ACACGGTCCACTGGGTGTCGCTGAGCGA 1455871 ||||| || || || |||||||| ||| | || | ||| |||| |||| ||| ||| Sbjct 1811 TGGACGGCTGAAGAAGTCGACCTAT-CGCAGGACCAGCGCCAATGGGAGTCGTTGACCGA 1753 Query 1455872 CGACGAGCGCCATTTCATCAAGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCG 1455931 || ||||||||| ||||||| |||||||||||||| ||| |||||| || ||||||| Sbjct 1752 CGGCGAGCGCCACTTCATCACCCACGTCCTCGCCTTCTTT-GCCGCCTCGGACGGCATCG 1694 Query 1455932 TGGCCGAGAACCTGGCCGGCCGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGT 1455991 | ||||| || ||||| ||||| ||||| |||||||| | | ||||| || | Sbjct 1693 TCCTGGAGAATCTTGCCGGACGCTTCATGAAGGAGGTCCAGGTCGCGGAGGCGCGCGCCT 1634 Query 1455992 TTTACGGGTTCCAGATCGCCATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCG 1456051 | ||||||||||||||||||||||| ||||||||||| || | ||| ||||| | | Sbjct 1633 TCTACGGGTTCCAGATCGCCATCGAGAACATCCACTCGGAGATGTACAGCCTCCTCCTGG 1574 Query 1456052 ACACCTACGTCAAGGACCCGGTCGAGAAGGACCACCTCTTTCGCGCCATCGACACGGTGC 1456111 | ||||| |||||||| | ||||||| ||| || || | |||| | || || | | Sbjct 1573 AGTCCTACATCAAGGACTCCAACGAGAAGAACCGGCTGTTCCACGCCGTGGAGACCATCC 1514 Query 1456112 CGTCGGTGAGGAAAAAGGCCGACTGGGCGATGAAGTGGATCAACAAGGAGGGCCTCGACA 1456171 | | | | |||||| | ||||| | |||||| || || || | | Sbjct 1513 CCTGCATCCAGCGGAAGGCCCAGTGGGCCCTCCGCTGGATCGAC----GGGTCCGAGTC- 1459 Query 1456172 CTTTGCCGAGCGGCTCGTCGGCTTTGCC-GCGTCGAGGGCATCTTTTTCTCGGGCAGTTT 1456230 ||| || |||||| |||||| ||| ||| | |||||||||||||| ||||| || || || Sbjct 1458 CTTCGCGGAGCGGATCGTCGCCTTCGCCTGTGTCGAGGGCATCTTCTTCTCCGGAAGCTT 1399 Query 1456231 CTGCGCCATCTTTTGGCTCAAGAAGCGCGGCCTCATGCCCGGTCTTCTGCTTTAGCAACG 1456290 |||||||||||| |||||||||||||||||||| ||||| || || | || ||||| Sbjct 1398 CTGCGCCATCTTCTGGCTCAAGAAGCGCGGCCTGATGCCGGGCCTAACG-TTCTCCAACG 1340 Query 1456291 AATTTATCAGTCGCGACGAAG 1456311 |||| ||| | ||||||| Sbjct 1339 AATTGATCTCGAGGGACGAAG 1319 >seq294625 Length=4757 Score = 282 bits (312), Expect = 6e-70 Identities = 386/528 (73%), Gaps = 22/528 (4%) Strand=Plus/Minus Query 1455753 TGTTCCCCATCCGCTACCAGCGGATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTT 1455812 ||||||| || ||||||| | ||| |||||||||||| || |||||||| |||||||| Sbjct 4654 TGTTCCCTATTCGCTACCCTCAGATTTGGGAAATGTAC-AAGAAGGCCGAAGCCTCCTTC 4596 Query 1455813 TGGACCGCCGAGGAGGTCGACCTCGGCGCCG-AC--ACGGTCCACTGGGTGTCGCTGAGC 1455869 |||||||||||||||||||| | | | | | || ||| |||||||| || || | | Sbjct 4595 TGGACCGCCGAGGAGGTCGATTT-GTCACAGGACCAACG--CCACTGGGACTCCCTCACC 4539 Query 1455870 GACGACGAGCGCCATTTCATCAAGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCAT 1455929 |||| ||| || || ||||||| |||||||||||||| || ||||||| ||| || || Sbjct 4538 GACGGCGAACGACACTTCATCACTCACGTCCTCGCCTTCTT-CGCCGCCTCCGACGGAAT 4480 Query 1455930 CGTGGCCGAGAACCTGGCCGGCCGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTT 1455989 ||| || ||||| ||||| | || ||||||||||| ||| | | ||||| ||| Sbjct 4479 CGTATTGGAAAACCTAGCCGGAAGGTTCATGAAAGAGGTTCAAGTCGCCGAGGCTCGTGC 4420 Query 1455990 GTTTTACGGGTTCCAGATCGCCATCGAAAACATCCACTCTGAAACCTA---CTCGCTCCT 1456046 || ||||| ||||||||||| ||||| ||||| ||||| || | || || ||||| Sbjct 4419 TTTCTACGGATTCCAGATCGCAATCGAGAACATTCACTCCGAGATGTACAGCTTGCTCC- 4361 Query 1456047 GATCGACACCTACGTCAAGGACCCGGTCGAGAAGGACCACCTCTTTCGCGCCATCGACAC 1456106 |||| |||||| |||||||| | ||| ||| || |||||||| | || || Sbjct 4360 --TCGAGACCTACATCAAGGACTCCAACGACAAGATGAGGCTGTTTCGCGCTGTGGAGAC 4303 Query 1456107 GGTGCCGTCGGTGAGGAAAAAGGCCGACTGGGCGATGAAGTGGATCAACAAGGAGGGCCT 1456166 | || | || ||| |||||| | |||||||||| ||||||| || ||| Sbjct 4302 CATTCCTTGCGTCCAGAAGAAGGCCAATTGGGCGATGAGGTGGATC------GATGGCTC 4249 Query 1456167 CGACAC-TTTGCCGAGCGGCTCGTCGGCTTTGC-CGCGTCGAGGGCATCTTTTTCTCGGG 1456224 || | ||||| || || || | | ||| || ||||||| || || || |||||||| Sbjct 4248 GGAGTCGTTTGCGGAACGTATCATTGCCTTCGCTTGCGTCGAAGGGATATTCTTCTCGGG 4189 Query 1456225 CAGTTTCTGCGCCATCTTTTGGCTCAAGAAGCGCGGCCTCATGCCCGG 1456272 || |||||||| ||||| ||| | ||||| ||||| | ||||| || Sbjct 4188 AAGCTTCTGCGCTATCTTCTGGTTGAAGAAACGCGGTTTGATGCCTGG 4141 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7133066613640772