Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carthamus_20tinctorius_20[genbank_20GCA_5F001633085.1_202016-04-27] 463,906 sequences; 661,937,708 total letters Query= NC_026924.1 Length=174885 Score E Sequences producing significant alignments: (Bits) Value seq107965 268 1e-66 seq169634 208 8e-49 seq250312 178 1e-39 seq300680 163 3e-35 seq10884 132 5e-26 seq36621 127 2e-24 seq8631 125 8e-24 seq33322 109 6e-19 seq58055 105 7e-18 seq264332 100 3e-16 seq292072 87.8 2e-12 seq254652 82.4 8e-11 >seq107965 Length=6474 Score = 268 bits (296), Expect = 1e-66 Identities = 415/593 (70%), Gaps = 0/593 (0%) Strand=Plus/Plus Query 160128 TATGGTAACAACATCATCTCTGGTGCAGTTGTTCCATCTTCCAACGCAATTGGTCTTCAC 160187 ||||| ||||| || || | ||| | || |||| ||| || || ||| | || Sbjct 5876 TATGGAAACAATATTATTTTAGGTACCATTATTCCTATTTCTGCAGCTATAGGTTTGCAT 5935 Query 160188 TTCTATCCCATCTGGGAAGCCGCATCACTTGATGAGTGGCTGTATAACGGTGGTCCTTTC 160247 || || || || |||||||| |||| ||||||| ||| | || || |||||||||| Sbjct 5936 TTTTACCCAATATGGGAAGCAACATCTGTTGATGAATGGTTATACAATGGTGGTCCTTAT 5995 Query 160248 CAACTCGTAGTATTTCACTTCCTTATCGGCATCTATGCATATATGGGACGTGAGTGGGAA 160307 |||| | || | |||||| | | || | | || ||||| |||||||||||| Sbjct 5996 GAACTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAA 6055 Query 160308 CTTTCATACCGTTTAGGTATGCGCCCCTGGATCTGTGTAGCATATTCTGCTCCAGTCGCT 160367 ||| | ||| | |||||||| | ||||| ||| |||||||| ||||| || || Sbjct 6056 CTTAGTTTTCGTCTGGGTATGCGAACTTGGATGGTTGTTGCATATTCAGCTCCTGTTGCA 6115 Query 160368 GCAGCATCTGCTGTATTCCTCGTATATCCTTTCGGTCAAGGTTCTTTCTCCGATGCTATG 160427 || || || ||| ||| | | || || | |||||||| || || |||| |||| Sbjct 6116 GCTGCGAGTGTTGTTTTCTTGATCTACCCAATTGGTCAAGGAAGCTTTTCTGATGGTATG 6175 Query 160428 CCTCTTGGTATCTCTGGTACTTTTAACTACATGCTTGTATTCCAAGCAGAACACAATATC 160487 ||||| || || ||||||||||| |||| |||| |||||||||| || || ||||| || Sbjct 6176 CCTCTAGGAATTTCTGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCACAACATT 6235 Query 160488 CTTATGCATCCGTTCCACATGCTCGGCGTTGCTGGGGTATTCGGTGGATCTTTGTTCTCT 160547 |||||||| || || |||||||| || || ||||| ||| |||| || || | ||| | Sbjct 6236 CTTATGCACCCATTTCACATGCTAGGTGTAGCTGGTGTAATCGGCGGCTCCCTATTCAGT 6295 Query 160548 GCTATGCACGGAAGTCTCGTTACTTCCTCACTCGTTCGTGAAACGACTGAAACAGAGTCA 160607 |||||||| || | || || || | | | | ||||| || |||| | || Sbjct 6296 GCTATGCATGGTTCCTTGGTAACCTCTTGTTTGATCAGGGAAACCACAGAAAATAAATCT 6355 Query 160608 CAGAACTACGGTTATAAGTTCGGTCAAGAGGAAGAGACCTACAACATCGTCGCAGCCCAT 160667 || | ||||| | || |||| ||| || || || || || ||||| || | ||| Sbjct 6356 GCTAATGAAGGTTACAGATTTGGTCTAGAAGATGAAACTTATAATATCGTAGCCGTTCAT 6415 Query 160668 GGTTACTTCGGTCGTTTGATCTTCCAATATGCATCATTCAACAACTCCCGTTC 160720 ||||| || || || ||||||||||||||||| ||||||||||| ||||| Sbjct 6416 GGTTATTTTGGCCGATTGATCTTCCAATATGCTAGTTTCAACAACTCTCGTTC 6468 >seq169634 Length=720 Score = 208 bits (230), Expect = 8e-49 Identities = 322/457 (70%), Gaps = 2/457 (0%) Strand=Plus/Minus Query 159980 TACCAATAACCGCCTCTATGTCGGTTGGTTCGGCGTACTGATGATTCCAACTCTGTTGGC 160039 |||| | ||||| || || | || ||||| || || ||||||| || || | ||| | Sbjct 457 TACCGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATCCCTACCTTATTGAC 398 Query 160040 AGCAACCATCTGT-TTCATCGTCGCCTTCGTCGCTGCTCCCCCTGTGGACATCGACGGCA 160098 ||||| ||||| || || |||| ||| | |||||||| || ||||| || || || | Sbjct 397 CGCAACT-TCTGTATTTATTATCGCTTTCATTGCTGCTCCTCCAGTGGATATTGATGGTA 339 Query 160099 TCCGTGAACCCGTCGCTGGTTCACTCATGTATGGTAACAACATCATCTCTGGTGCAGTTG 160158 | |||||||| || ||| || || | ||||| ||||| || || || |||| || Sbjct 338 TTCGTGAACCTGTTTATGGATCTCTAAGTTATGGAAACAATATTATTTCAGGTGTCATTA 279 Query 160159 TTCCATCTTCCAACGCAATTGGTCTTCACTTCTATCCCATCTGGGAAGCCGCATCACTTG 160218 |||| |||| || || ||| | || || || || || |||||||| ||||| ||| Sbjct 278 TTCCTACTTCTGCAGCTATAGGTTTGCATTTTTACCCAATATGGGAAGCAGCATCCGTTG 219 Query 160219 ATGAGTGGCTGTATAACGGTGGTCCTTTCCAACTCGTAGTATTTCACTTCCTTATCGGCA 160278 |||| ||| | || || |||||||||| |||| | || | |||||| | | || Sbjct 218 ATGAATGGTTATACAATGGTGGTCCTTATGAACTAATTGTTCTACACTTCTTACTTGGTG 159 Query 160279 TCTATGCATATATGGGACGTGAGTGGGAACTTTCATACCGTTTAGGTATGCGCCCCTGGA 160338 | | || ||||| ||||||||||||||| | |||| | |||||||| || |||| Sbjct 158 TAGCTTGTTACATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGACCTTGGA 99 Query 160339 TCTGTGTAGCATATTCTGCTCCAGTCGCTGCAGCATCTGCTGTATTCCTCGTATATCCTT 160398 | ||| |||||||| ||| | || || || ||| ||||||| ||| | | || || Sbjct 98 TTGTTGTTGCATATTCAGCTTCTGTTGCAGCTGCAACTGCTGTTTTCTTGATCTACCCAA 39 Query 160399 TCGGTCAAGGTTCTTTCTCCGATGCTATGCCTCTTGG 160435 | |||||||| || || |||| ||||||||| || Sbjct 38 TTGGTCAAGGAAGCTTTTCTGATGGTATGCCTCTAGG 2 >seq250312 Length=8481 Score = 178 bits (196), Expect = 1e-39 Identities = 318/463 (69%), Gaps = 11/463 (2%) Strand=Plus/Plus Query 160476 GAACACAATATCCTTATGCATCCGTTCCACATGCTCGGCGTTGCTGGGGTATTCGGTGGA 160535 || ||||| || |||| ||| | || |||||||| ||||| ||||| ||| | || | Sbjct 1574 GAGCACAACATTCTTAGGCACTCATTTCACATGCTAGGCGTAGCTGGTGTAATTGGCAGC 1633 Query 160536 TCTTTGTTCTCTGCTATGCACGGAAGTCTCGTTACTTCCTCACTCGTTC-GTGAAACGAC 160594 || | ||| |||||||| || | || || ||| | | || | ||||| || Sbjct 1634 TCCCTATTCAGTGCTATGCGTGGTTCCTTGGTAACC-CCTAGTTTGATCAGGGAAACCAC 1692 Query 160595 TGAAACAGAGTCACAGAACTACGGTTATAAGTTCGGTCAAGAGGAAGAGACCTACAACAT 160654 | | || | | || | ||||||| ||||||||||| | ||| | || || || Sbjct 1693 AAAGAATGAATAAGCTAATGAAGGTTATATATTCGGTCAAGAAGGAGAAAATTAGAATAT 1752 Query 160655 CGTCGCAGCCCATGGTTACTTCGGTCGTTTGATCTTCCAATATGCATCATTCAACAACTC 160714 || || || |||||||| || ||||| |||||||||| | |||| ||||||||||| Sbjct 1753 TGTAGCCGCTCATGGTTATTTTGGTCGATTGATCTTCCGACATGCTAGTTTCAACAACTC 1812 Query 160715 CCGTTCACTTCACTTCTTCCTGGCAGCATGGCCTGTAGTCGGAATCTGGTTCACTGCTCT 160774 |||| | || |||||||| || | |||||| |||||||| | || | Sbjct 1813 ACGTTTTTTACATTTCTTCCTAGCTACTTGGCCT---------ATCTGGTTTATTGTGTT 1863 Query 160775 TGGTGTTAGCACCATGGCATTCAACCTCAACGGTTTCAACTTCAACCAGTCCATCCTCGA 160834 ||| | ||||| ||||| | |||||| || ||||| | ||| | || || | |||| Sbjct 1864 AGGTATCAGCACTATGGCTTACAACCTAAATGGTTTTAGTTTCCATCAATCTGTAGTCGA 1923 Query 160835 TGGTCAAGGTCGTGTACTGAACACCTGGGCAGACGTACTGAATCGTGCTGGTCTTGGTAT 160894 ||||| ||| |||| | || || ||||| || | | || ||||| |||||||| Sbjct 1924 CAGTCAATGTCATGTAATTAATACTTGGGCTGATATCATTAACTGTGCTAACCTTGGTAT 1983 Query 160895 GGAAGTTATGCATGAGCGTAACGCACACAACTTCCCACTCGAC 160937 |||||||||| |||| |||| || || || ||||| || ||| Sbjct 1984 GGAAGTTATGTATGAATGTAATGCTCATAATTTCCCTCTAGAC 2026 >seq300680 Length=3790 Score = 163 bits (180), Expect = 3e-35 Identities = 239/332 (72%), Gaps = 6/332 (2%) Strand=Plus/Minus Query 160413 TTCTCCGATGCTATGCCTCTTGGTATCTCTGGTACTTTTAACTACATGCTTGTATTCCAA 160472 || || |||| ||||||||| || || ||||||||||| |||| |||| |||||||||| Sbjct 670 TTTTCTGATGGTATGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATTGTATTCCAG 611 Query 160473 GCAGAACACAATATCCTTATGCATCCGTTCCACATGCTCGGCGTTGCTGGGGTATTCGGT 160532 | || ||||| || |||||||| || || |||||||| |||| ||||| ||| ||| Sbjct 610 GTTGAGCACAACATTCTTATGCACCCATTTCACATGCTAAGCGTAGCTGGTGTACTCGTC 551 Query 160533 GGATCTTTGTTCTCTGCTATGCACGGAAGTCTCGTTACTTCCTCACTCGTTCGTGAAACG 160592 | || | || ||||||||| || | || || | || | || ||||| Sbjct 550 AGCTCCCTATTTAATGCTATGCATGGTTCCTTGGTAACCT-CTAGTTTAATCAGGAAACC 492 Query 160593 ACTGAAACAGAGTCACAGAACTACGGTTATAAGTTCGGTCAAGAGGAAG-AGACCTACAA 160651 | |||| || | || | ||||| || ||||||||||| |||| | || || || Sbjct 491 AGAGAAAATGAATTTGCTAATGAAGGTTACAAATTCGGTCAAGAAGAAGAAAACTTATAA 432 Query 160652 CATCGTCGCAGCCCATGGTTACTTCGGTCGTTTGATCTTCCAATATGCATCATTCAACAA 160711 ||||| || || |||||||| || || || ||| ||||||| ||||| |||||||| Sbjct 431 TATCGTAGCCGCTCATGGTTATTTTGGCCGATTGGTCTTCCAGTATGCTAGTTTCAACAA 372 Query 160712 CTCCCGTTCACTTCACTTCTTCCTGGCAGCAT 160743 ||| |||| ||| || | ||||| ||||||| Sbjct 371 CTCTCGTT--CTTTACAT-TTCCT-GCAGCAT 344 >seq10884 Length=5042 Score = 132 bits (146), Expect = 5e-26 Identities = 117/146 (80%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 160413 TTCTCCGATGCTATGCCTCTTGGTATCTCTGGTACTTTTAACTACATGCTTGTATTCCAA 160472 || || |||| ||||||||| || || ||||||||||| |||| |||| |||||||||| Sbjct 3789 TTTTCTGATGGTATGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATTGTATTCCAG 3848 Query 160473 GCAGAACACAATATCCTTATGCATCCGTTCCACATGCTCGGCGTTGCTGGGGTATTCGGT 160532 || || ||||| || |||||||| || || |||||||| ||||| ||||| |||||||| Sbjct 3849 GCTGAGCACAACATTCTTATGCACCCATTTCACATGCTAGGCGTAGCTGGTGTATTCGGC 3908 Query 160533 GGATCTTTGTTCTCTGCTATGCACGG 160558 || || | ||| |||||| || || Sbjct 3909 GGCTCCCTATTCATTGCTATACATGG 3934 >seq36621 Length=13842 Score = 127 bits (140), Expect = 2e-24 Identities = 215/310 (69%), Gaps = 1/310 (0%) Strand=Plus/Minus Query 160637 GGAAGAGACCTACAACATCGTCGCAGCCCATGGTTACTTCGGTCGTTTGATCTTCCAATA 160696 |||||| || || || ||||| || |||||||| || | | | ||||||||| |||| Sbjct 7969 GGAAGAAACTTATAATATCGTATATGCTCATGGTTATTTGGCT-GATTGATCTTCTAATA 7911 Query 160697 TGCATCATTCAACAACTCCCGTTCACTTCACTTCTTCCTGGCAGCATGGCCTGTAGTCGG 160756 ||| |||||| |||| | || | | || || || || || |||||||| | || Sbjct 7910 TGCTAGTTTCAACGACTCTCATTTTATATATTTTTTTCTAGCTGCTTGGCCTGTTTTTGG 7851 Query 160757 AATCTGGTTCACTGCTCTTGGTGTTAGCACCATGGCATTCAACCTCAACGGTTTCAACTT 160816 || ||||||||||| | ||| ||||| ||||| |||||||| || |||| || Sbjct 7850 TATATGGTTCACTGCGTTGGGTACTAGCATTATGGCTTTCAACCTAAATGGTTGAAATCG 7791 Query 160817 CAACCAGTCCATCCTCGATGGTCAAGGTCGTGTACTGAACACCTGGGCAGACGTACTGAA 160876 ||||| | | | ||| |||| | |||||| |||| || || | || | || Sbjct 7790 AAACCAATTGGTAGTTGATAGTCACAGCCGTGTAATGAATACTTGAGGTGATATCAGTAA 7731 Query 160877 TCGTGCTGGTCTTGGTATGGAAGTTATGCATGAGCGTAACGCACACAACTTCCCACTCGA 160936 | |||| |||| |||| | ||||||||||| ||||| || || || | ||| || || Sbjct 7730 CCATGCTAACCTTGTTATGAATGTTATGCATGAACGTAATGCTCATAATTCCCCTCTAGA 7671 Query 160937 CCTCGCTGCT 160946 | | |||||| Sbjct 7670 CTTGGCTGCT 7661 >seq8631 Length=609 Score = 125 bits (138), Expect = 8e-24 Identities = 113/141 (80%), Gaps = 1/141 (1%) Strand=Plus/Minus Query 160419 GATGCTATGCCTCTTGGTATCTCTGGTACTTTTAACTACATGCTTGTATTCCAAGCAGAA 160478 |||| ||||||||| || || ||||||||||| |||| |||| |||||||||| || || Sbjct 329 GATGGTATGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATTGTATTCCAGGCCGAG 270 Query 160479 CACAATATCCTTATGCATCCGTTCCACATGCTCGGCGTTGCTGGGGTATTCGGTGGAT-C 160537 ||||| || |||||||| || || |||||||| | ||| ||||| |||||||| || | | Sbjct 269 CACAACATTCTTATGCACCCATTTCACATGCTAGACGTAGCTGGTGTATTCGGCGGCTCC 210 Query 160538 TTTGTTCTCTGCTATGCACGG 160558 | ||| ||||||||| || Sbjct 209 CTAATTCAGTGCTATGCATGG 189 Score = 82.4 bits (90), Expect = 8e-11 Identities = 111/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 160185 CACTTCTATCCCATCTGGGAAGCCGCATCACTTGATGAGTGGCTGTATAACGGTGGTCCT 160244 || || || || || |||||||| ||||| ||||||| ||| | || || ||||||||| Sbjct 497 CATTTTTACCCAATATGGGAAGCAGCATCCATTGATGAATGGTTATACAATGGTGGTCCT 438 Query 160245 TTCCAACTCGTAGTATTTCACTTCCTTATCGGCATCTATGCATATATGGGACGTGAGTGG 160304 | |||| | || | |||||| | | || | | || ||||| ||||||||| Sbjct 437 TATGAACTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGG 378 Query 160305 GAACTTTCATACCGTTTAGGTATGCGCCCCTGGAT 160339 |||||| | |||| | | ||||||||| ||||| Sbjct 377 GAACTTAGTTTCCGTCTGGATATGCGCCCTTGGAT 343 >seq33322 Length=15627 Score = 109 bits (120), Expect = 6e-19 Identities = 107/138 (78%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 162171 GCAGCAATCTTTAGATTCCTGTTGTTTCTTCAAGGATTCCATAACTGGACCCTGAACCCC 162230 ||||| || ||| |||| | | ||| |||||||||| ||||||||||| ||||||| Sbjct 6657 GCAGCTATATTTCGATTTATCCTCTTTTTTCAAGGATTTCATAACTGGACATTGAACCCA 6716 Query 162231 TTCCATATGATGGGAGTTGCTGGTATACTAGGTGGAGCACTTCTATCTGCTATTCACGGA 162290 || ||||||||||||||||| ||| || | |||| || | |||| |||||||| || Sbjct 6717 TTTCATATGATGGGAGTTGCCGGTGTATTGGGTGCTGCTTTGCTATGCGCTATTCATGGT 6776 Query 162291 GTCACAGTTGAAAATACA 162308 | || || ||||||||| Sbjct 6777 GCTACCGTAGAAAATACA 6794 >seq58055 Length=1185 Score = 105 bits (116), Expect = 7e-18 Identities = 132/181 (73%), Gaps = 0/181 (0%) Strand=Plus/Plus Query 162226 ACCCCTTCCATATGATGGGAGTTGCTGGTATACTAGGTGGAGCACTTCTATCTGCTATTC 162285 |||| || ||||||||||||||||| ||| || | |||| || | |||| ||||||| Sbjct 1 ACCCATTTCATATGATGGGAGTTGCCGGTGTATTGGGTGCTGCTTTGCTATGCGCTATTC 60 Query 162286 ACGGAGTCACAGTTGAAAATACATTATACGAGGATGGAGAACAAGCAAACACCTTTAAGG 162345 | | | || || |||||||| |||| || ||||| || ||||| || || | Sbjct 61 ATGATGCTACTGTAGAAAATACTTTATTTGAAGATGGTGATGGCGCAAATACATTCTGTG 120 Query 162346 CGTTTGATTCGACACAGGAGGAAGAGACTTATTCTATGGTCACTGCAAACCGCTTCTGGT 162405 | ||| | | || || | ||||| |||||||| ||||||||||| || ||||| |||| Sbjct 121 CTTTTAACCCAACTCAAGCTGAAGAAACTTATTCAATGGTCACTGCTAATCGCTTTTGGT 180 Query 162406 C 162406 | Sbjct 181 C 181 >seq264332 Length=996 Score = 100 bits (110), Expect = 3e-16 Identities = 79/95 (83%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 160677 GGTCGTTTGATCTTCCAATATGCATCATTCAACAACTCCCGTTCACTTCACTTCTTCCTG 160736 || || ||||||||||||||||| ||||||||||| ||||| | || |||||||| Sbjct 272 GGCCGATTGATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCTTTACATTTCTTCCTA 213 Query 160737 GCAGCATGGCCTGTAGTCGGAATCTGGTTCACTGC 160771 || || ||||||||||| || |||||||||||||| Sbjct 212 GCTGCTTGGCCTGTAGTAGGCATCTGGTTCACTGC 178 >seq292072 Length=5858 Score = 87.8 bits (96), Expect = 2e-12 Identities = 80/101 (79%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 162366 GAAGAGACTTATTCTATGGTCACTGCAAACCGCTTCTGGTCGCAGATCTTCGGTATTGCG 162425 ||||| |||||||| ||||||||||| || ||||| ||||| || ||||| || |||| Sbjct 1533 GAAGAAACTTATTCAATGGTCACTGCTAATCGCTTTTGGTCCCAAATCTTTGGGGTTGCC 1474 Query 162426 TTTTCTAACAAGCGGTGGCTTCATTTTTTCATGTTGTTTGT 162466 |||| || || || ||| | ||||| || ||||| ||||| Sbjct 1473 TTTTTCAATAAACGTTGGTTACATTTCTTTATGTTATTTGT 1433 >seq254652 Length=6058 Score = 82.4 bits (90), Expect = 8e-11 Identities = 163/237 (69%), Gaps = 7/237 (3%) Strand=Plus/Plus Query 160128 TATGGTAACAACATCATCTCTGGTGCAGTTGTTCCATCTTCCAACGCAATTGGTCTTCAC 160187 ||||| ||||| || || || |||| ||| |||| |||| | || | ||| | || Sbjct 711 TATGGAAACAATATTATTTCAGGTGTTGTTATTCCTACTTCTACAGCTACAGGTTTGCAT 770 Query 160188 TTCTATCCCATCTGGGAAGCCGCATCACTTGATGAGTGGCTG-TATAACGGTGGTCCTTT 160246 || || | || | |||||| ||| ||||||| ||| | || || |||||||||| Sbjct 771 TTTTACCTAATATAGGAAGCAACATTTGTTGATGAATGGTTTATACAATGGTGGTCCTTA 830 Query 160247 CCAACTCGTAGTATTTCACTTCCTTATCGGCATCTATGCATAT---ATGGGACGTGAGTG 160303 |||| | ||| | |||||| | | || | || || | | ||||| || ||||| Sbjct 831 TGAACTAATTGTACTACACTTCTTACTTGG--TGTA-GCGTGTTACATGGGTCGCGAGTG 887 Query 160304 GGAACTTTCATACCGTTTAGGTATGCGCCCCTGGATCTGTGTAGCATATTCTGCTCC 160360 ||||||| | |||| | ||| |||| || | ||| ||| |||||||| ||||| Sbjct 888 GGAACTTAGTTTCCGTCTGGGTGTGCGACCTTTGATTGTTGTTGCATATTCAGCTCC 944 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556259534217200