Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carthamus_20tinctorius_20[genbank_20GCA_5F001633085.1_202016-04-27] 463,906 sequences; 661,937,708 total letters Query= NC_026926.1 Length=192108 Score E Sequences producing significant alignments: (Bits) Value seq107965 316 2e-81 seq300680 185 1e-41 seq250312 181 1e-40 seq10884 131 2e-25 seq8631 129 7e-25 seq58055 111 2e-19 seq292072 109 7e-19 seq264332 104 3e-17 seq33322 93.3 5e-14 seq449122 82.4 9e-11 seq231965 82.4 9e-11 >seq107965 Length=6474 Score = 316 bits (350), Expect = 2e-81 Identities = 426/593 (72%), Gaps = 0/593 (0%) Strand=Plus/Plus Query 181149 TATGGTAACAACATCATCTCTGGTGCAGTTGTTCCATCTTCCAACGCAATTGGTCTTCAC 181208 ||||| ||||| || || | ||| | || |||| ||| || || ||| | || Sbjct 5876 TATGGAAACAATATTATTTTAGGTACCATTATTCCTATTTCTGCAGCTATAGGTTTGCAT 5935 Query 181209 TTCTATCCCATCTGGGAAGCCGCATCACTTGATGAGTGGCTGTATAACGGTGGTCCTTTC 181268 || || || || |||||||| |||| ||||||| ||| | || || |||||||||| Sbjct 5936 TTTTACCCAATATGGGAAGCAACATCTGTTGATGAATGGTTATACAATGGTGGTCCTTAT 5995 Query 181269 CAACTCGTAGTCTTTCACTTCCTTATCGGCATTTATGCATACATGGGACGTGAATGGGAA 181328 |||| | || | |||||| | | || | | |||||||| ||||| |||||| Sbjct 5996 GAACTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAA 6055 Query 181329 CTCTCTTACCGCTTAGGTATGCGCCCCTGGATCTGTGTTGCATACTCTGCTCCAGTCGCA 181388 || || || | |||||||| | ||||| ||||||||| || ||||| || ||| Sbjct 6056 CTTAGTTTTCGTCTGGGTATGCGAACTTGGATGGTTGTTGCATATTCAGCTCCTGTTGCA 6115 Query 181389 GCAGCATCTGCTGTATTCCTAGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGACGCAATG 181448 || || || ||| ||| | |||| || | |||||||| || ||||| | ||| Sbjct 6116 GCTGCGAGTGTTGTTTTCTTGATCTACCCAATTGGTCAAGGAAGCTTTTCTGATGGTATG 6175 Query 181449 CCACTTGGCATCTCTGGTACATTCAACTACATGCTTGTTTTCCAAGCAGAGCACAACATT 181508 || || || || |||||||| ||||||| |||| |||| ||||| || |||||||||||| Sbjct 6176 CCTCTAGGAATTTCTGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCACAACATT 6235 Query 181509 CTGATGCATCCCTTCCACATGTTGGGTGTCGCAGGTGTATTTGGTGGTTCACTGTTCAGT 181568 || ||||| || || |||||| | ||||| || |||||| | || || || || |||||| Sbjct 6236 CTTATGCACCCATTTCACATGCTAGGTGTAGCTGGTGTAATCGGCGGCTCCCTATTCAGT 6295 Query 181569 GCAATGCACGGTTCTTTGGTTACATCTTCACTCGTCCGTGAGACGACTGAAACTGAGTCA 181628 || ||||| ||||| ||||| || |||| | || | || || || |||| | | || Sbjct 6296 GCTATGCATGGTTCCTTGGTAACCTCTTGTTTGATCAGGGAAACCACAGAAAATAAATCT 6355 Query 181629 CAGAACTATGGTTACAAGTTCGGACAAGAAGAAGAGACATACAACATCGTCGCCGCCCAC 181688 || | ||||||| || || | |||||| || || || || ||||| |||| || Sbjct 6356 GCTAATGAAGGTTACAGATTTGGTCTAGAAGATGAAACTTATAATATCGTAGCCGTTCAT 6415 Query 181689 GGTTACTTTGGTCGCTTGATCTTCCAATATGCTTCATTCAACAACTCACGTTC 181741 ||||| ||||| || |||||||||||||||||| ||||||||||| ||||| Sbjct 6416 GGTTATTTTGGCCGATTGATCTTCCAATATGCTAGTTTCAACAACTCTCGTTC 6468 >seq300680 Length=3790 Score = 185 bits (204), Expect = 1e-41 Identities = 228/309 (74%), Gaps = 2/309 (1%) Strand=Plus/Minus Query 181434 TTCTCTGACGCAATGCCACTTGGCATCTCTGGTACATTCAACTACATGCTTGTTTTCCAA 181493 || ||||| | ||||| || || || |||||||| ||||||| |||| |||| ||||| Sbjct 670 TTTTCTGATGGTATGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATTGTATTCCAG 611 Query 181494 GCAGAGCACAACATTCTGATGCATCCCTTCCACATGTTGGGTGTCGCAGGTGTATTTGGT 181553 | |||||||||||||| ||||| || || |||||| | | || || |||||| | | Sbjct 610 GTTGAGCACAACATTCTTATGCACCCATTTCACATGCTAAGCGTAGCTGGTGTACTCGTC 551 Query 181554 GGTTCACTGTTCAGTGCAATGCACGGTTCTTTGGTTACATCTTCACTCGTCCGTGAGACG 181613 | || || || | ||| ||||| ||||| ||||| || ||| | || | || || Sbjct 550 AGCTCCCTATTTAATGCTATGCATGGTTCCTTGGTAACCTCTAGTTTAATCAG-GAAACC 492 Query 181614 ACTGAAACTGAGTCACAGAACTATGGTTACAAGTTCGGACAAGAAGAAG-AGACATACAA 181672 | |||| ||| | || | |||||||| ||||| |||||||||| | || || || Sbjct 491 AGAGAAAATGAATTTGCTAATGAAGGTTACAAATTCGGTCAAGAAGAAGAAAACTTATAA 432 Query 181673 CATCGTCGCCGCCCACGGTTACTTTGGTCGCTTGATCTTCCAATATGCTTCATTCAACAA 181732 ||||| ||||| || ||||| ||||| || ||| ||||||| |||||| |||||||| Sbjct 431 TATCGTAGCCGCTCATGGTTATTTTGGCCGATTGGTCTTCCAGTATGCTAGTTTCAACAA 372 Query 181733 CTCACGTTC 181741 ||| ||||| Sbjct 371 CTCTCGTTC 363 >seq250312 Length=8481 Score = 181 bits (200), Expect = 1e-40 Identities = 316/461 (69%), Gaps = 9/461 (2%) Strand=Plus/Plus Query 181497 GAGCACAACATTCTGATGCATCCCTTCCACATGTTGGGTGTCGCAGGTGTATTTGGTGGT 181556 |||||||||||||| | ||| | || |||||| | || || || |||||| |||| | Sbjct 1574 GAGCACAACATTCTTAGGCACTCATTTCACATGCTAGGCGTAGCTGGTGTAATTGGCAGC 1633 Query 181557 TCACTGTTCAGTGCAATGCACGGTTCTTTGGTTACATCTTCACTCGTCCGTGAGACGACT 181616 || || |||||||| |||| ||||| ||||| || || | || | || || || Sbjct 1634 TCCCTATTCAGTGCTATGCGTGGTTCCTTGGTAACCCCTAGTTTGATCAGGGAAACCACA 1693 Query 181617 GAAACTGAGTCACAGAACTATGGTTACAAGTTCGGACAAGAAGAAGAGACATACAACATC 181676 | | ||| | | || | ||||| | ||||| ||||||| ||| | || || || Sbjct 1694 AAGAATGAATAAGCTAATGAAGGTTATATATTCGGTCAAGAAGGAGAAAATTAGAATATT 1753 Query 181677 GTCGCCGCCCACGGTTACTTTGGTCGCTTGATCTTCCAATATGCTTCATTCAACAACTCA 181736 || ||||| || ||||| |||||||| |||||||||| | ||||| |||||||||||| Sbjct 1754 GTAGCCGCTCATGGTTATTTTGGTCGATTGATCTTCCGACATGCTAGTTTCAACAACTCA 1813 Query 181737 CGTTCACTGCACTTCTTCCTCGCAGCATGGCCTGTAGTTGGAATCTGGTTCACCGCACTG 181796 |||| | || |||||||| || | |||||| |||||||| | | | Sbjct 1814 CGTTTTTTACATTTCTTCCTAGCTACTTGGCCT---------ATCTGGTTTATTGTGTTA 1864 Query 181797 GGCGTAAGCACCATGGCATTTAACCTCAATGGATTCAACTTCAACCAGTCTATCCTCGAC 181856 || | ||||| ||||| | ||||| ||||| || | ||| | || ||| | ||||| Sbjct 1865 GGTATCAGCACTATGGCTTACAACCTAAATGGTTTTAGTTTCCATCAATCTGTAGTCGAC 1924 Query 181857 GGACAAGGACGTGTCCTCAACACCTGGGCAGACGTGCTCAACCGTGCCGGTCTCGGCATG 181916 | ||| | | ||| | || || ||||| || | | ||| |||| || || ||| Sbjct 1925 AGTCAATGTCATGTAATTAATACTTGGGCTGATATCATTAACTGTGCTAACCTTGGTATG 1984 Query 181917 GAAGTCATGCACGAGCGCAACGCGCACAACTTCCCGCTTGA 181957 ||||| ||| | || | || || || || ||||| || || Sbjct 1985 GAAGTTATGTATGAATGTAATGCTCATAATTTCCCTCTAGA 2025 >seq10884 Length=5042 Score = 131 bits (144), Expect = 2e-25 Identities = 126/162 (78%), Gaps = 0/162 (0%) Strand=Plus/Plus Query 181434 TTCTCTGACGCAATGCCACTTGGCATCTCTGGTACATTCAACTACATGCTTGTTTTCCAA 181493 || ||||| | ||||| || || || |||||||| ||||||| |||| |||| ||||| Sbjct 3789 TTTTCTGATGGTATGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATTGTATTCCAG 3848 Query 181494 GCAGAGCACAACATTCTGATGCATCCCTTCCACATGTTGGGTGTCGCAGGTGTATTTGGT 181553 || |||||||||||||| ||||| || || |||||| | || || || |||||||| || Sbjct 3849 GCTGAGCACAACATTCTTATGCACCCATTTCACATGCTAGGCGTAGCTGGTGTATTCGGC 3908 Query 181554 GGTTCACTGTTCAGTGCAATGCACGGTTCTTTGGTTACATCT 181595 || || || |||| ||| || || ||||| | ||| || ||| Sbjct 3909 GGCTCCCTATTCATTGCTATACATGGTTCCTCGGTAACCTCT 3950 >seq8631 Length=609 Score = 129 bits (142), Expect = 7e-25 Identities = 120/151 (79%), Gaps = 1/151 (1%) Strand=Plus/Minus Query 181446 ATGCCACTTGGCATCTCTGGTACATTCAACTACATGCTTGTTTTCCAAGCAGAGCACAAC 181505 ||||| || || || |||||||| ||||||| |||| |||| ||||| || ||||||||| Sbjct 323 ATGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATTGTATTCCAGGCCGAGCACAAC 264 Query 181506 ATTCTGATGCATCCCTTCCACATGTTGGGTGTCGCAGGTGTATTTGGTGGTTCACT-GTT 181564 ||||| ||||| || || |||||| | | || || |||||||| || || || || || Sbjct 263 ATTCTTATGCACCCATTTCACATGCTAGACGTAGCTGGTGTATTCGGCGGCTCCCTAATT 204 Query 181565 CAGTGCAATGCACGGTTCTTTGGTTACATCT 181595 |||||| ||||| ||||| ||||| || ||| Sbjct 203 CAGTGCTATGCATGGTTCCTTGGTAACCTCT 173 >seq58055 Length=1185 Score = 111 bits (122), Expect = 2e-19 Identities = 133/181 (73%), Gaps = 0/181 (0%) Strand=Plus/Plus Query 182899 ACCCCTTCCATATGATGGGAGTTGCTGGTATACTGGGTGGAGCACTGCTCAGTGCTATCC 182958 |||| || ||||||||||||||||| ||| || |||||| || |||| | ||||| | Sbjct 1 ACCCATTTCATATGATGGGAGTTGCCGGTGTATTGGGTGCTGCTTTGCTATGCGCTATTC 60 Query 182959 ATGGTGTCACAGTAGAGAATACCTTGTATGAAGATGGAGAACAGGCAAACACATTTAAAG 183018 ||| || || ||||| ||||| || | ||||||||| || ||||| ||||| | Sbjct 61 ATGATGCTACTGTAGAAAATACTTTATTTGAAGATGGTGATGGCGCAAATACATTCTGTG 120 Query 183019 CGTTCGATTCCACTCAGGAGGAGGAGACCTATTCGATGGTTACAGCGAATCGTTTTTGGT 183078 | || | | ||||| | || || || ||||| ||||| || || ||||| ||||||| Sbjct 121 CTTTTAACCCAACTCAAGCTGAAGAAACTTATTCAATGGTCACTGCTAATCGCTTTTGGT 180 Query 183079 C 183079 | Sbjct 181 C 181 >seq292072 Length=5858 Score = 109 bits (120), Expect = 7e-19 Identities = 90/110 (82%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 183030 ACTCAGGAGGAGGAGACCTATTCGATGGTTACAGCGAATCGTTTTTGGTCACAAATCTTC 183089 ||||| | || || || ||||| ||||| || || ||||| |||||||| |||||||| Sbjct 1542 ACTCAAGCTGAAGAAACTTATTCAATGGTCACTGCTAATCGCTTTTGGTCCCAAATCTTT 1483 Query 183090 GGGGTTGCGTTTAGCAATAAGCGTTGGTTGCACTTCTTTATGTTGTTTGT 183139 |||||||| ||| |||||| |||||||| || ||||||||||| ||||| Sbjct 1482 GGGGTTGCCTTTTTCAATAAACGTTGGTTACATTTCTTTATGTTATTTGT 1433 >seq264332 Length=996 Score = 104 bits (114), Expect = 3e-17 Identities = 81/97 (84%), Gaps = 0/97 (0%) Strand=Plus/Minus Query 181696 TTGGTCGCTTGATCTTCCAATATGCTTCATTCAACAACTCACGTTCACTGCACTTCTTCC 181755 |||| || |||||||||||||||||| ||||||||||| ||||| | || ||||||| Sbjct 274 TTGGCCGATTGATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCTTTACATTTCTTCC 215 Query 181756 TCGCAGCATGGCCTGTAGTTGGAATCTGGTTCACCGC 181792 | || || ||||||||||| || ||||||||||| || Sbjct 214 TAGCTGCTTGGCCTGTAGTAGGCATCTGGTTCACTGC 178 >seq33322 Length=15627 Score = 93.3 bits (102), Expect = 5e-14 Identities = 86/109 (79%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 182872 TTCAGGGTTTCCACAACTGGACACTCAACCCCTTCCATATGATGGGAGTTGCTGGTATAC 182931 |||| || || || ||||||||| | ||||| || ||||||||||||||||| ||| || Sbjct 6685 TTCAAGGATTTCATAACTGGACATTGAACCCATTTCATATGATGGGAGTTGCCGGTGTAT 6744 Query 182932 TGGGTGGAGCACTGCTCAGTGCTATCCATGGTGTCACAGTAGAGAATAC 182980 |||||| || |||| | ||||| ||||||| || ||||| ||||| Sbjct 6745 TGGGTGCTGCTTTGCTATGCGCTATTCATGGTGCTACCGTAGAAAATAC 6793 >seq449122 Length=870 Score = 82.4 bits (90), Expect = 9e-11 Identities = 65/78 (83%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 181640 TTACAAGTTCGGACAAGAAGAAGAGACATACAACATCGTCGCCGCCCACGGTTACTTTGG 181699 ||||| ||||| ||||||||||| || ||||| ||||| ||||| || ||||| ||||| Sbjct 176 TTACAGATTCGGTCAAGAAGAAGAAACTTACAATATCGTAGCCGCTCATGGTTATTTTGG 235 Query 181700 TCGCTTGATCTTCCAATA 181717 | |||||||||||||| Sbjct 236 CCAATTGATCTTCCAATA 253 >seq231965 Length=7494 Score = 82.4 bits (90), Expect = 9e-11 Identities = 135/195 (69%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 181353 CCCTGGATCTGTGTTGCATACTCTGCTCCAGTCGCAGCAGCATCTGCTGTATTCCTAGTC 181412 || ||||| ||||||||| | |||| || ||| | || ||| ||| ||| | || Sbjct 6582 CCTTGGATTATTGTTGCATATCCAGCTCTTGTTGCAACTGCGACTGATGTTTTCTTGATC 6641 Query 181413 TATCCTTTCGGTCAAGGTTCTTTCTCTGACGCAATGCCACTTGGCATCTCTGGTACATTC 181472 || || | ||||| | || ||| | | || || || || || | |||||| ||| Sbjct 6642 TACCCAATTTGTCAATGAAGCTTTTCTCATGGTATTCCTCTAGGAATTTATGGTACTTTC 6701 Query 181473 AACTACATGCTTGTTTTCCAAGCAGAGCACAACATTCTGATGCATCCCTTCCACATGTTG 181532 |||| |||| |||| || | | |||||||||||||| ||||| || || ||||| | Sbjct 6702 AACTTCATGATTGTATTTAAGGTTGAGCACAACATTCTTATGCACCCATTTTACATGCTA 6761 Query 181533 GGTGTCGCAGGTGTA 181547 || || | |||||| Sbjct 6762 GGCGTAGACGGTGTA 6776 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 611053540095680