Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Carthamus_20tinctorius_20[genbank_20GCA_5F001633085.1_202016-04-27]
463,906 sequences; 661,937,708 total letters
Query= NC_026926.1
Length=192108
Score E
Sequences producing significant alignments: (Bits) Value
seq107965 316 2e-81
seq300680 185 1e-41
seq250312 181 1e-40
seq10884 131 2e-25
seq8631 129 7e-25
seq58055 111 2e-19
seq292072 109 7e-19
seq264332 104 3e-17
seq33322 93.3 5e-14
seq449122 82.4 9e-11
seq231965 82.4 9e-11
>seq107965
Length=6474
Score = 316 bits (350), Expect = 2e-81
Identities = 426/593 (72%), Gaps = 0/593 (0%)
Strand=Plus/Plus
Query 181149 TATGGTAACAACATCATCTCTGGTGCAGTTGTTCCATCTTCCAACGCAATTGGTCTTCAC 181208
||||| ||||| || || | ||| | || |||| ||| || || ||| | ||
Sbjct 5876 TATGGAAACAATATTATTTTAGGTACCATTATTCCTATTTCTGCAGCTATAGGTTTGCAT 5935
Query 181209 TTCTATCCCATCTGGGAAGCCGCATCACTTGATGAGTGGCTGTATAACGGTGGTCCTTTC 181268
|| || || || |||||||| |||| ||||||| ||| | || || ||||||||||
Sbjct 5936 TTTTACCCAATATGGGAAGCAACATCTGTTGATGAATGGTTATACAATGGTGGTCCTTAT 5995
Query 181269 CAACTCGTAGTCTTTCACTTCCTTATCGGCATTTATGCATACATGGGACGTGAATGGGAA 181328
|||| | || | |||||| | | || | | |||||||| ||||| ||||||
Sbjct 5996 GAACTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAA 6055
Query 181329 CTCTCTTACCGCTTAGGTATGCGCCCCTGGATCTGTGTTGCATACTCTGCTCCAGTCGCA 181388
|| || || | |||||||| | ||||| ||||||||| || ||||| || |||
Sbjct 6056 CTTAGTTTTCGTCTGGGTATGCGAACTTGGATGGTTGTTGCATATTCAGCTCCTGTTGCA 6115
Query 181389 GCAGCATCTGCTGTATTCCTAGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGACGCAATG 181448
|| || || ||| ||| | |||| || | |||||||| || ||||| | |||
Sbjct 6116 GCTGCGAGTGTTGTTTTCTTGATCTACCCAATTGGTCAAGGAAGCTTTTCTGATGGTATG 6175
Query 181449 CCACTTGGCATCTCTGGTACATTCAACTACATGCTTGTTTTCCAAGCAGAGCACAACATT 181508
|| || || || |||||||| ||||||| |||| |||| ||||| || ||||||||||||
Sbjct 6176 CCTCTAGGAATTTCTGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCACAACATT 6235
Query 181509 CTGATGCATCCCTTCCACATGTTGGGTGTCGCAGGTGTATTTGGTGGTTCACTGTTCAGT 181568
|| ||||| || || |||||| | ||||| || |||||| | || || || || ||||||
Sbjct 6236 CTTATGCACCCATTTCACATGCTAGGTGTAGCTGGTGTAATCGGCGGCTCCCTATTCAGT 6295
Query 181569 GCAATGCACGGTTCTTTGGTTACATCTTCACTCGTCCGTGAGACGACTGAAACTGAGTCA 181628
|| ||||| ||||| ||||| || |||| | || | || || || |||| | | ||
Sbjct 6296 GCTATGCATGGTTCCTTGGTAACCTCTTGTTTGATCAGGGAAACCACAGAAAATAAATCT 6355
Query 181629 CAGAACTATGGTTACAAGTTCGGACAAGAAGAAGAGACATACAACATCGTCGCCGCCCAC 181688
|| | ||||||| || || | |||||| || || || || ||||| |||| ||
Sbjct 6356 GCTAATGAAGGTTACAGATTTGGTCTAGAAGATGAAACTTATAATATCGTAGCCGTTCAT 6415
Query 181689 GGTTACTTTGGTCGCTTGATCTTCCAATATGCTTCATTCAACAACTCACGTTC 181741
||||| ||||| || |||||||||||||||||| ||||||||||| |||||
Sbjct 6416 GGTTATTTTGGCCGATTGATCTTCCAATATGCTAGTTTCAACAACTCTCGTTC 6468
>seq300680
Length=3790
Score = 185 bits (204), Expect = 1e-41
Identities = 228/309 (74%), Gaps = 2/309 (1%)
Strand=Plus/Minus
Query 181434 TTCTCTGACGCAATGCCACTTGGCATCTCTGGTACATTCAACTACATGCTTGTTTTCCAA 181493
|| ||||| | ||||| || || || |||||||| ||||||| |||| |||| |||||
Sbjct 670 TTTTCTGATGGTATGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATTGTATTCCAG 611
Query 181494 GCAGAGCACAACATTCTGATGCATCCCTTCCACATGTTGGGTGTCGCAGGTGTATTTGGT 181553
| |||||||||||||| ||||| || || |||||| | | || || |||||| | |
Sbjct 610 GTTGAGCACAACATTCTTATGCACCCATTTCACATGCTAAGCGTAGCTGGTGTACTCGTC 551
Query 181554 GGTTCACTGTTCAGTGCAATGCACGGTTCTTTGGTTACATCTTCACTCGTCCGTGAGACG 181613
| || || || | ||| ||||| ||||| ||||| || ||| | || | || ||
Sbjct 550 AGCTCCCTATTTAATGCTATGCATGGTTCCTTGGTAACCTCTAGTTTAATCAG-GAAACC 492
Query 181614 ACTGAAACTGAGTCACAGAACTATGGTTACAAGTTCGGACAAGAAGAAG-AGACATACAA 181672
| |||| ||| | || | |||||||| ||||| |||||||||| | || || ||
Sbjct 491 AGAGAAAATGAATTTGCTAATGAAGGTTACAAATTCGGTCAAGAAGAAGAAAACTTATAA 432
Query 181673 CATCGTCGCCGCCCACGGTTACTTTGGTCGCTTGATCTTCCAATATGCTTCATTCAACAA 181732
||||| ||||| || ||||| ||||| || ||| ||||||| |||||| ||||||||
Sbjct 431 TATCGTAGCCGCTCATGGTTATTTTGGCCGATTGGTCTTCCAGTATGCTAGTTTCAACAA 372
Query 181733 CTCACGTTC 181741
||| |||||
Sbjct 371 CTCTCGTTC 363
>seq250312
Length=8481
Score = 181 bits (200), Expect = 1e-40
Identities = 316/461 (69%), Gaps = 9/461 (2%)
Strand=Plus/Plus
Query 181497 GAGCACAACATTCTGATGCATCCCTTCCACATGTTGGGTGTCGCAGGTGTATTTGGTGGT 181556
|||||||||||||| | ||| | || |||||| | || || || |||||| |||| |
Sbjct 1574 GAGCACAACATTCTTAGGCACTCATTTCACATGCTAGGCGTAGCTGGTGTAATTGGCAGC 1633
Query 181557 TCACTGTTCAGTGCAATGCACGGTTCTTTGGTTACATCTTCACTCGTCCGTGAGACGACT 181616
|| || |||||||| |||| ||||| ||||| || || | || | || || ||
Sbjct 1634 TCCCTATTCAGTGCTATGCGTGGTTCCTTGGTAACCCCTAGTTTGATCAGGGAAACCACA 1693
Query 181617 GAAACTGAGTCACAGAACTATGGTTACAAGTTCGGACAAGAAGAAGAGACATACAACATC 181676
| | ||| | | || | ||||| | ||||| ||||||| ||| | || || ||
Sbjct 1694 AAGAATGAATAAGCTAATGAAGGTTATATATTCGGTCAAGAAGGAGAAAATTAGAATATT 1753
Query 181677 GTCGCCGCCCACGGTTACTTTGGTCGCTTGATCTTCCAATATGCTTCATTCAACAACTCA 181736
|| ||||| || ||||| |||||||| |||||||||| | ||||| ||||||||||||
Sbjct 1754 GTAGCCGCTCATGGTTATTTTGGTCGATTGATCTTCCGACATGCTAGTTTCAACAACTCA 1813
Query 181737 CGTTCACTGCACTTCTTCCTCGCAGCATGGCCTGTAGTTGGAATCTGGTTCACCGCACTG 181796
|||| | || |||||||| || | |||||| |||||||| | | |
Sbjct 1814 CGTTTTTTACATTTCTTCCTAGCTACTTGGCCT---------ATCTGGTTTATTGTGTTA 1864
Query 181797 GGCGTAAGCACCATGGCATTTAACCTCAATGGATTCAACTTCAACCAGTCTATCCTCGAC 181856
|| | ||||| ||||| | ||||| ||||| || | ||| | || ||| | |||||
Sbjct 1865 GGTATCAGCACTATGGCTTACAACCTAAATGGTTTTAGTTTCCATCAATCTGTAGTCGAC 1924
Query 181857 GGACAAGGACGTGTCCTCAACACCTGGGCAGACGTGCTCAACCGTGCCGGTCTCGGCATG 181916
| ||| | | ||| | || || ||||| || | | ||| |||| || || |||
Sbjct 1925 AGTCAATGTCATGTAATTAATACTTGGGCTGATATCATTAACTGTGCTAACCTTGGTATG 1984
Query 181917 GAAGTCATGCACGAGCGCAACGCGCACAACTTCCCGCTTGA 181957
||||| ||| | || | || || || || ||||| || ||
Sbjct 1985 GAAGTTATGTATGAATGTAATGCTCATAATTTCCCTCTAGA 2025
>seq10884
Length=5042
Score = 131 bits (144), Expect = 2e-25
Identities = 126/162 (78%), Gaps = 0/162 (0%)
Strand=Plus/Plus
Query 181434 TTCTCTGACGCAATGCCACTTGGCATCTCTGGTACATTCAACTACATGCTTGTTTTCCAA 181493
|| ||||| | ||||| || || || |||||||| ||||||| |||| |||| |||||
Sbjct 3789 TTTTCTGATGGTATGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATTGTATTCCAG 3848
Query 181494 GCAGAGCACAACATTCTGATGCATCCCTTCCACATGTTGGGTGTCGCAGGTGTATTTGGT 181553
|| |||||||||||||| ||||| || || |||||| | || || || |||||||| ||
Sbjct 3849 GCTGAGCACAACATTCTTATGCACCCATTTCACATGCTAGGCGTAGCTGGTGTATTCGGC 3908
Query 181554 GGTTCACTGTTCAGTGCAATGCACGGTTCTTTGGTTACATCT 181595
|| || || |||| ||| || || ||||| | ||| || |||
Sbjct 3909 GGCTCCCTATTCATTGCTATACATGGTTCCTCGGTAACCTCT 3950
>seq8631
Length=609
Score = 129 bits (142), Expect = 7e-25
Identities = 120/151 (79%), Gaps = 1/151 (1%)
Strand=Plus/Minus
Query 181446 ATGCCACTTGGCATCTCTGGTACATTCAACTACATGCTTGTTTTCCAAGCAGAGCACAAC 181505
||||| || || || |||||||| ||||||| |||| |||| ||||| || |||||||||
Sbjct 323 ATGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATTGTATTCCAGGCCGAGCACAAC 264
Query 181506 ATTCTGATGCATCCCTTCCACATGTTGGGTGTCGCAGGTGTATTTGGTGGTTCACT-GTT 181564
||||| ||||| || || |||||| | | || || |||||||| || || || || ||
Sbjct 263 ATTCTTATGCACCCATTTCACATGCTAGACGTAGCTGGTGTATTCGGCGGCTCCCTAATT 204
Query 181565 CAGTGCAATGCACGGTTCTTTGGTTACATCT 181595
|||||| ||||| ||||| ||||| || |||
Sbjct 203 CAGTGCTATGCATGGTTCCTTGGTAACCTCT 173
>seq58055
Length=1185
Score = 111 bits (122), Expect = 2e-19
Identities = 133/181 (73%), Gaps = 0/181 (0%)
Strand=Plus/Plus
Query 182899 ACCCCTTCCATATGATGGGAGTTGCTGGTATACTGGGTGGAGCACTGCTCAGTGCTATCC 182958
|||| || ||||||||||||||||| ||| || |||||| || |||| | ||||| |
Sbjct 1 ACCCATTTCATATGATGGGAGTTGCCGGTGTATTGGGTGCTGCTTTGCTATGCGCTATTC 60
Query 182959 ATGGTGTCACAGTAGAGAATACCTTGTATGAAGATGGAGAACAGGCAAACACATTTAAAG 183018
||| || || ||||| ||||| || | ||||||||| || ||||| ||||| |
Sbjct 61 ATGATGCTACTGTAGAAAATACTTTATTTGAAGATGGTGATGGCGCAAATACATTCTGTG 120
Query 183019 CGTTCGATTCCACTCAGGAGGAGGAGACCTATTCGATGGTTACAGCGAATCGTTTTTGGT 183078
| || | | ||||| | || || || ||||| ||||| || || ||||| |||||||
Sbjct 121 CTTTTAACCCAACTCAAGCTGAAGAAACTTATTCAATGGTCACTGCTAATCGCTTTTGGT 180
Query 183079 C 183079
|
Sbjct 181 C 181
>seq292072
Length=5858
Score = 109 bits (120), Expect = 7e-19
Identities = 90/110 (82%), Gaps = 0/110 (0%)
Strand=Plus/Minus
Query 183030 ACTCAGGAGGAGGAGACCTATTCGATGGTTACAGCGAATCGTTTTTGGTCACAAATCTTC 183089
||||| | || || || ||||| ||||| || || ||||| |||||||| ||||||||
Sbjct 1542 ACTCAAGCTGAAGAAACTTATTCAATGGTCACTGCTAATCGCTTTTGGTCCCAAATCTTT 1483
Query 183090 GGGGTTGCGTTTAGCAATAAGCGTTGGTTGCACTTCTTTATGTTGTTTGT 183139
|||||||| ||| |||||| |||||||| || ||||||||||| |||||
Sbjct 1482 GGGGTTGCCTTTTTCAATAAACGTTGGTTACATTTCTTTATGTTATTTGT 1433
>seq264332
Length=996
Score = 104 bits (114), Expect = 3e-17
Identities = 81/97 (84%), Gaps = 0/97 (0%)
Strand=Plus/Minus
Query 181696 TTGGTCGCTTGATCTTCCAATATGCTTCATTCAACAACTCACGTTCACTGCACTTCTTCC 181755
|||| || |||||||||||||||||| ||||||||||| ||||| | || |||||||
Sbjct 274 TTGGCCGATTGATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCTTTACATTTCTTCC 215
Query 181756 TCGCAGCATGGCCTGTAGTTGGAATCTGGTTCACCGC 181792
| || || ||||||||||| || ||||||||||| ||
Sbjct 214 TAGCTGCTTGGCCTGTAGTAGGCATCTGGTTCACTGC 178
>seq33322
Length=15627
Score = 93.3 bits (102), Expect = 5e-14
Identities = 86/109 (79%), Gaps = 0/109 (0%)
Strand=Plus/Plus
Query 182872 TTCAGGGTTTCCACAACTGGACACTCAACCCCTTCCATATGATGGGAGTTGCTGGTATAC 182931
|||| || || || ||||||||| | ||||| || ||||||||||||||||| ||| ||
Sbjct 6685 TTCAAGGATTTCATAACTGGACATTGAACCCATTTCATATGATGGGAGTTGCCGGTGTAT 6744
Query 182932 TGGGTGGAGCACTGCTCAGTGCTATCCATGGTGTCACAGTAGAGAATAC 182980
|||||| || |||| | ||||| ||||||| || ||||| |||||
Sbjct 6745 TGGGTGCTGCTTTGCTATGCGCTATTCATGGTGCTACCGTAGAAAATAC 6793
>seq449122
Length=870
Score = 82.4 bits (90), Expect = 9e-11
Identities = 65/78 (83%), Gaps = 0/78 (0%)
Strand=Plus/Plus
Query 181640 TTACAAGTTCGGACAAGAAGAAGAGACATACAACATCGTCGCCGCCCACGGTTACTTTGG 181699
||||| ||||| ||||||||||| || ||||| ||||| ||||| || ||||| |||||
Sbjct 176 TTACAGATTCGGTCAAGAAGAAGAAACTTACAATATCGTAGCCGCTCATGGTTATTTTGG 235
Query 181700 TCGCTTGATCTTCCAATA 181717
| ||||||||||||||
Sbjct 236 CCAATTGATCTTCCAATA 253
>seq231965
Length=7494
Score = 82.4 bits (90), Expect = 9e-11
Identities = 135/195 (69%), Gaps = 0/195 (0%)
Strand=Plus/Plus
Query 181353 CCCTGGATCTGTGTTGCATACTCTGCTCCAGTCGCAGCAGCATCTGCTGTATTCCTAGTC 181412
|| ||||| ||||||||| | |||| || ||| | || ||| ||| ||| | ||
Sbjct 6582 CCTTGGATTATTGTTGCATATCCAGCTCTTGTTGCAACTGCGACTGATGTTTTCTTGATC 6641
Query 181413 TATCCTTTCGGTCAAGGTTCTTTCTCTGACGCAATGCCACTTGGCATCTCTGGTACATTC 181472
|| || | ||||| | || ||| | | || || || || || | |||||| |||
Sbjct 6642 TACCCAATTTGTCAATGAAGCTTTTCTCATGGTATTCCTCTAGGAATTTATGGTACTTTC 6701
Query 181473 AACTACATGCTTGTTTTCCAAGCAGAGCACAACATTCTGATGCATCCCTTCCACATGTTG 181532
|||| |||| |||| || | | |||||||||||||| ||||| || || ||||| |
Sbjct 6702 AACTTCATGATTGTATTTAAGGTTGAGCACAACATTCTTATGCACCCATTTTACATGCTA 6761
Query 181533 GGTGTCGCAGGTGTA 181547
|| || | ||||||
Sbjct 6762 GGCGTAGACGGTGTA 6776
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 611053540095680
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |