Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carthamus_20tinctorius_20[genbank_20GCA_5F001633085.1_202016-04-27] 463,906 sequences; 661,937,708 total letters Query= NC_026927.1 Length=228143 Score E Sequences producing significant alignments: (Bits) Value seq107965 280 2e-70 seq169634 248 1e-60 seq250312 163 4e-35 seq300680 127 3e-24 seq292072 102 1e-16 seq254652 102 1e-16 seq33322 98.7 1e-15 seq58055 96.9 5e-15 seq8631 91.5 2e-13 >seq107965 Length=6474 Score = 280 bits (310), Expect = 2e-70 Identities = 418/593 (70%), Gaps = 0/593 (0%) Strand=Plus/Plus Query 174636 TATGGAAACAACATCATCTCTGGTGCAGTTGTTCCTAGTTCAAACGCAATCGGTCTACAC 174695 ||||||||||| || || | ||| | || |||||| ||| || || ||| | || Sbjct 5876 TATGGAAACAATATTATTTTAGGTACCATTATTCCTATTTCTGCAGCTATAGGTTTGCAT 5935 Query 174696 TTCTACCCAATCTGGGAAGCAGCCACACTCGACGAATGGCTCTACAACGGTGGTCCTTTC 174755 || |||||||| ||||||||| | | | || |||||| | ||||| |||||||||| Sbjct 5936 TTTTACCCAATATGGGAAGCAACATCTGTTGATGAATGGTTATACAATGGTGGTCCTTAT 5995 Query 174756 CAACTAGTTGTCTTCCACTTCCTTATTGGTATCTACGCCTATATGGGACGTGAGTGGGAA 174815 ||||| |||| | |||||| | ||||| | || ||||| |||||||||||| Sbjct 5996 GAACTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAA 6055 Query 174816 CTCTCTTATCGTTTAGGTATGAGACCTTGGATCTGTGTAGCATACTCTGCACCAGTTGCA 174875 || || |||| | |||||| || ||||||| ||| ||||| || || || |||||| Sbjct 6056 CTTAGTTTTCGTCTGGGTATGCGAACTTGGATGGTTGTTGCATATTCAGCTCCTGTTGCA 6115 Query 174876 GCAGCTTCAGCAGTATTCCTAGTCTATCCTTTCGGTCAAGGTTCATTCTCAGACGCGATG 174935 || || | || ||| | |||| || | |||||||| || || || | ||| Sbjct 6116 GCTGCGAGTGTTGTTTTCTTGATCTACCCAATTGGTCAAGGAAGCTTTTCTGATGGTATG 6175 Query 174936 CCCTTGGGTATCTCTGGAACATTCAACTACATGTTGGTCTTCCAAGCAGAACATAACATC 174995 || | || || ||||| || ||||||| |||| | || ||||| || || || ||||| Sbjct 6176 CCTCTAGGAATTTCTGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCACAACATT 6235 Query 174996 TTGATGCACCCCTTCCACATGTTGGGAGTCGCAGGTGTCTTCGGTGGTTCATTGTTCTCA 175055 | |||||||| || |||||| | || || || ||||| |||| || || | ||| Sbjct 6236 CTTATGCACCCATTTCACATGCTAGGTGTAGCTGGTGTAATCGGCGGCTCCCTATTCAGT 6295 Query 175056 GCGATGCATGGTTCACTTGTTACCTCTTCACTTGTCCGTGAGACAACTGAAACTGAGTCA 175115 || ||||||||||| | || ||||||| | || | || || || |||| | | || Sbjct 6296 GCTATGCATGGTTCCTTGGTAACCTCTTGTTTGATCAGGGAAACCACAGAAAATAAATCT 6355 Query 175116 CAGAACTATGGTTACAAGTTCGGCCAAGAAGAAGAGACCTATAACATCGTGGCAGCCCAT 175175 || | ||||||| || || | |||||| || || ||||| ||||| || | ||| Sbjct 6356 GCTAATGAAGGTTACAGATTTGGTCTAGAAGATGAAACTTATAATATCGTAGCCGTTCAT 6415 Query 175176 GGCTACTTCGGTCGTTTGATCTTCCAATACGCTTCATTCAACAACTCACGCTC 175228 || || || || || |||||||||||||| ||| ||||||||||| || || Sbjct 6416 GGTTATTTTGGCCGATTGATCTTCCAATATGCTAGTTTCAACAACTCTCGTTC 6468 >seq169634 Length=720 Score = 248 bits (274), Expect = 1e-60 Identities = 314/429 (73%), Gaps = 2/429 (0%) Strand=Plus/Minus Query 174489 ACCAACAATCGTCTTTACGTCGGTTGGTTCGGTGTTCTAATGATTCCTACATTGTTAGCC 174548 ||| | || ||||||||| | || ||||| |||||| | ||||| ||||| || || || Sbjct 456 ACCGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATCCCTACCTTATTGACC 397 Query 174549 GCAACTGTATGT-TTCATTATCGCTTTCGTGGGTGCTCCCCCAGTGGACATCGACGGAAT 174607 |||||| | ||| || |||||||||||| | | |||||| |||||||| || || || || Sbjct 396 GCAACT-TCTGTATTTATTATCGCTTTCATTGCTGCTCCTCCAGTGGATATTGATGGTAT 338 Query 174608 CCGTGAACCAGTAGCTGGTTCACTCATGTATGGAAACAACATCATCTCTGGTGCAGTTGT 174667 |||||||| || ||| || || | ||||||||||| || || || |||| || | Sbjct 337 TCGTGAACCTGTTTATGGATCTCTAAGTTATGGAAACAATATTATTTCAGGTGTCATTAT 278 Query 174668 TCCTAGTTCAAACGCAATCGGTCTACACTTCTACCCAATCTGGGAAGCAGCCACACTCGA 174727 ||||| ||| || || ||| | || || |||||||| ||||||||||| | | || Sbjct 277 TCCTACTTCTGCAGCTATAGGTTTGCATTTTTACCCAATATGGGAAGCAGCATCCGTTGA 218 Query 174728 CGAATGGCTCTACAACGGTGGTCCTTTCCAACTAGTTGTCTTCCACTTCCTTATTGGTAT 174787 |||||| | ||||| |||||||||| ||||| |||| | |||||| | ||||| | Sbjct 217 TGAATGGTTATACAATGGTGGTCCTTATGAACTAATTGTTCTACACTTCTTACTTGGTGT 158 Query 174788 CTACGCCTATATGGGACGTGAGTGGGAACTCTCTTATCGTTTAGGTATGAGACCTTGGAT 174847 || ||||| |||||||||||||| || ||| | |||||| |||||||||| Sbjct 157 AGCTTGTTACATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGACCTTGGAT 98 Query 174848 CTGTGTAGCATACTCTGCACCAGTTGCAGCAGCTTCAGCAGTATTCCTAGTCTATCCTTT 174907 ||| ||||| || || | |||||||| || | || || ||| | |||| || | Sbjct 97 TGTTGTTGCATATTCAGCTTCTGTTGCAGCTGCAACTGCTGTTTTCTTGATCTACCCAAT 38 Query 174908 CGGTCAAGG 174916 |||||||| Sbjct 37 TGGTCAAGG 29 >seq250312 Length=8481 Score = 163 bits (180), Expect = 4e-35 Identities = 314/462 (68%), Gaps = 11/462 (2%) Strand=Plus/Plus Query 174984 GAACATAACATCTTGATGCACCCCTTCCACATGTTGGGAGTCGCAGGTGTCTTCGGTGGT 175043 || || ||||| | | |||| | || |||||| | || || || ||||| | || | Sbjct 1574 GAGCACAACATTCTTAGGCACTCATTTCACATGCTAGGCGTAGCTGGTGTAATTGGCAGC 1633 Query 175044 TCATTGTTCTCAGCGATGCATGGTTCACTTGTTACCTCTTCACTTG-TCCGTGAGACAAC 175102 || | ||| || |||| |||||| |||| || | | | ||| || | || || || Sbjct 1634 TCCCTATTCAGTGCTATGCGTGGTTC-CTTGGTAACCCCTAGTTTGATCAGGGAAACCAC 1692 Query 175103 TGAAACTGAGTCACAGAACTATGGTTACAAGTTCGGCCAAGAAGAAGAGACCTATAACAT 175162 | | ||| | | || | ||||| | ||||| ||||||| ||| | || || || Sbjct 1693 AAAGAATGAATAAGCTAATGAAGGTTATATATTCGGTCAAGAAGGAGAAAATTAGAATAT 1752 Query 175163 CGTGGCAGCCCATGGCTACTTCGGTCGTTTGATCTTCCAATACGCTTCATTCAACAACTC 175222 || || || ||||| || || ||||| |||||||||| | | ||| ||||||||||| Sbjct 1753 TGTAGCCGCTCATGGTTATTTTGGTCGATTGATCTTCCGACATGCTAGTTTCAACAACTC 1812 Query 175223 ACGCTCACTCCACTTCTTCTTAGCCGCATGGCCAGTTGTGGGTATCTGGTTCACCGCACT 175282 ||| | | || |||||| |||| | ||||| ||||||||| | | | Sbjct 1813 ACGTTTTTTACATTTCTTCCTAGCTACTTGGCC---------TATCTGGTTTATTGTGTT 1863 Query 175283 TGGTGTTTCCACAATGGCATTCAACCTCAATGGTTTCAACTTCAACCAGTCTGTTATCGA 175342 ||| | ||| ||||| | |||||| |||||||| | ||| | || ||||| |||| Sbjct 1864 AGGTATCAGCACTATGGCTTACAACCTAAATGGTTTTAGTTTCCATCAATCTGTAGTCGA 1923 Query 175343 CGGACAAGGTAGAGTATTGAACACCTGGGCGGATGTTCTTAACAGAGCTGGTCTTGGGAT 175402 | | ||| || ||| | || || ||||| ||| | ||||| | ||| ||||| || Sbjct 1924 CAGTCAATGTCATGTAATTAATACTTGGGCTGATATCATTAACTGTGCTAACCTTGGTAT 1983 Query 175403 GGAAGTAATGCATGAGAGAAATGCACACAACTTCCCACTAGA 175444 |||||| ||| |||| | ||||| || || ||||| ||||| Sbjct 1984 GGAAGTTATGTATGAATGTAATGCTCATAATTTCCCTCTAGA 2025 >seq300680 Length=3790 Score = 127 bits (140), Expect = 3e-24 Identities = 208/297 (70%), Gaps = 2/297 (1%) Strand=Plus/Minus Query 174933 ATGCCCTTGGGTATCTCTGGAACATTCAACTACATGTTGGTCTTCCAAGCAGAACATAAC 174992 ||||| | || || ||||| || ||||||| |||| | || ||||| | || || ||| Sbjct 658 ATGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATTGTATTCCAGGTTGAGCACAAC 599 Query 174993 ATCTTGATGCACCCCTTCCACATGTTGGGAGTCGCAGGTGTCTTCGGTGGTTCATTGTTC 175052 || | |||||||| || |||||| | | || || ||||| ||| | || | || Sbjct 598 ATTCTTATGCACCCATTTCACATGCTAAGCGTAGCTGGTGTACTCGTCAGCTCCCTATTT 539 Query 175053 TCAGCGATGCATGGTTCACTTGTTACCTCTTCACTTGTCCGTGAGACAACTGAAACTGAG 175112 || ||||||||||| | || |||||| | || | || || | |||| ||| Sbjct 538 AATGCTATGCATGGTTCCTTGGTAACCTCTAGTTTAATCAG-GAAACCAGAGAAAATGAA 480 Query 175113 TCACAGAACTATGGTTACAAGTTCGGCCAAGAAGAAG-AGACCTATAACATCGTGGCAGC 175171 | || | |||||||| ||||| |||||||||| | || ||||| ||||| || || Sbjct 479 TTTGCTAATGAAGGTTACAAATTCGGTCAAGAAGAAGAAAACTTATAATATCGTAGCCGC 420 Query 175172 CCATGGCTACTTCGGTCGTTTGATCTTCCAATACGCTTCATTCAACAACTCACGCTC 175228 ||||| || || || || ||| ||||||| || ||| ||||||||||| || || Sbjct 419 TCATGGTTATTTTGGCCGATTGGTCTTCCAGTATGCTAGTTTCAACAACTCTCGTTC 363 >seq292072 Length=5858 Score = 102 bits (112), Expect = 1e-16 Identities = 83/101 (82%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 176529 GAAGAGACCTATTCGATGGTTACTGCGAACCGCTTCTGGTCGCAAATCTTCGGGGTTGCG 176588 ||||| || ||||| ||||| ||||| || ||||| ||||| |||||||| |||||||| Sbjct 1533 GAAGAAACTTATTCAATGGTCACTGCTAATCGCTTTTGGTCCCAAATCTTTGGGGTTGCC 1474 Query 176589 TTTAGTAATAAGCGTTGGCTTCACTTCTTTATGTTGTTTGT 176629 ||| ||||| |||||| | || ||||||||||| ||||| Sbjct 1473 TTTTTCAATAAACGTTGGTTACATTTCTTTATGTTATTTGT 1433 >seq254652 Length=6058 Score = 102 bits (112), Expect = 1e-16 Identities = 171/246 (70%), Gaps = 1/246 (0%) Strand=Plus/Plus Query 174636 TATGGAAACAACATCATCTCTGGTGCAGTTGTTCCTAGTTCAAACGCAATCGGTCTACAC 174695 ||||||||||| || || || |||| ||| |||||| ||| | || | ||| | || Sbjct 711 TATGGAAACAATATTATTTCAGGTGTTGTTATTCCTACTTCTACAGCTACAGGTTTGCAT 770 Query 174696 TTCTACCCAATCTGGGAAGCAGCCACACTCGACGAATGGCTC-TACAACGGTGGTCCTTT 174754 || |||| ||| | ||||||| | | || |||||| | ||||| |||||||||| Sbjct 771 TTTTACCTAATATAGGAAGCAACATTTGTTGATGAATGGTTTATACAATGGTGGTCCTTA 830 Query 174755 CCAACTAGTTGTCTTCCACTTCCTTATTGGTATCTACGCCTATATGGGACGTGAGTGGGA 174814 ||||| |||| | |||||| | ||||| | || ||||| || |||||||| Sbjct 831 TGAACTAATTGTACTACACTTCTTACTTGGTGTAGCGTGTTACATGGGTCGCGAGTGGGA 890 Query 174815 ACTCTCTTATCGTTTAGGTATGAGACCTTGGATCTGTGTAGCATACTCTGCACCAGTTGC 174874 ||| || ||| | ||| || |||||| ||| ||| ||||| || || || || | Sbjct 891 ACTTAGTTTCCGTCTGGGTGTGCGACCTTTGATTGTTGTTGCATATTCAGCTCCTATTAC 950 Query 174875 AGCAGC 174880 ||| || Sbjct 951 AGCTGC 956 >seq33322 Length=15627 Score = 98.7 bits (108), Expect = 1e-15 Identities = 104/137 (76%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 176334 GCAGCAATCTTTAGATTCCTATTGTTTCTTCAGGGTTTCCACAACTGGACACTGAACCCC 176393 ||||| || ||| |||| | | ||| |||| || || || ||||||||| ||||||| Sbjct 6657 GCAGCTATATTTCGATTTATCCTCTTTTTTCAAGGATTTCATAACTGGACATTGAACCCA 6716 Query 176394 TTCCATATGATGGGAGTTGCTGGTATACTAGGTGGAGCACTACTATCTGCAATCCATGGC 176453 || ||||||||||||||||| ||| || | |||| || | |||| || || ||||| Sbjct 6717 TTTCATATGATGGGAGTTGCCGGTGTATTGGGTGCTGCTTTGCTATGCGCTATTCATGGT 6776 Query 176454 GTTACTGTTGAAAATAC 176470 | ||| || |||||||| Sbjct 6777 GCTACCGTAGAAAATAC 6793 >seq58055 Length=1185 Score = 96.9 bits (106), Expect = 5e-15 Identities = 130/181 (72%), Gaps = 0/181 (0%) Strand=Plus/Plus Query 176389 ACCCCTTCCATATGATGGGAGTTGCTGGTATACTAGGTGGAGCACTACTATCTGCAATCC 176448 |||| || ||||||||||||||||| ||| || | |||| || | |||| || || | Sbjct 1 ACCCATTTCATATGATGGGAGTTGCCGGTGTATTGGGTGCTGCTTTGCTATGCGCTATTC 60 Query 176449 ATGGCGTTACTGTTGAAAATACCCTATATGAAGATGGAGAACAGAACAACACCTTCACTG 176508 ||| | |||||| |||||||| ||| ||||||||| || || || ||| || Sbjct 61 ATGATGCTACTGTAGAAAATACTTTATTTGAAGATGGTGATGGCGCAAATACATTCTGTG 120 Query 176509 CGTTCGATTCCACGCAGGAGGAAGAGACCTATTCGATGGTTACTGCGAACCGCTTCTGGT 176568 | || | | || || | ||||| || ||||| ||||| ||||| || ||||| |||| Sbjct 121 CTTTTAACCCAACTCAAGCTGAAGAAACTTATTCAATGGTCACTGCTAATCGCTTTTGGT 180 Query 176569 C 176569 | Sbjct 181 C 181 >seq8631 Length=609 Score = 91.5 bits (100), Expect = 2e-13 Identities = 113/155 (73%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 174693 CACTTCTACCCAATCTGGGAAGCAGCCACACTCGACGAATGGCTCTACAACGGTGGTCCT 174752 || || |||||||| ||||||||||| | | || |||||| | ||||| ||||||||| Sbjct 497 CATTTTTACCCAATATGGGAAGCAGCATCCATTGATGAATGGTTATACAATGGTGGTCCT 438 Query 174753 TTCCAACTAGTTGTCTTCCACTTCCTTATTGGTATCTACGCCTATATGGGACGTGAGTGG 174812 | ||||| |||| | |||||| | ||||| | || ||||| ||||||||| Sbjct 437 TATGAACTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGG 378 Query 174813 GAACTCTCTTATCGTTTAGGTATGAGACCTTGGAT 174847 ||||| || ||| | | |||| | |||||||| Sbjct 377 GAACTTAGTTTCCGTCTGGATATGCGCCCTTGGAT 343 Score = 84.2 bits (92), Expect = 3e-11 Identities = 110/151 (73%), Gaps = 1/151 (1%) Strand=Plus/Minus Query 174933 ATGCCCTTGGGTATCTCTGGAACATTCAACTACATGTTGGTCTTCCAAGCAGAACATAAC 174992 ||||| | || || ||||| || ||||||| |||| | || ||||| || || || ||| Sbjct 323 ATGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATTGTATTCCAGGCCGAGCACAAC 264 Query 174993 ATCTTGATGCACCCCTTCCACATGTTGGGAGTCGCAGGTGTCTTCGGTGGTTCATTG-TT 175051 || | |||||||| || |||||| | | || || ||||| ||||| || || | || Sbjct 263 ATTCTTATGCACCCATTTCACATGCTAGACGTAGCTGGTGTATTCGGCGGCTCCCTAATT 204 Query 175052 CTCAGCGATGCATGGTTCACTTGTTACCTCT 175082 | || ||||||||||| | || |||||| Sbjct 203 CAGTGCTATGCATGGTTCCTTGGTAACCTCT 173 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 725696865987280