Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Carthamus_20tinctorius_20[genbank_20GCA_5F001633085.1_202016-04-27]
463,906 sequences; 661,937,708 total letters
Query= NC_026927.1
Length=228143
Score E
Sequences producing significant alignments: (Bits) Value
seq107965 280 2e-70
seq169634 248 1e-60
seq250312 163 4e-35
seq300680 127 3e-24
seq292072 102 1e-16
seq254652 102 1e-16
seq33322 98.7 1e-15
seq58055 96.9 5e-15
seq8631 91.5 2e-13
>seq107965
Length=6474
Score = 280 bits (310), Expect = 2e-70
Identities = 418/593 (70%), Gaps = 0/593 (0%)
Strand=Plus/Plus
Query 174636 TATGGAAACAACATCATCTCTGGTGCAGTTGTTCCTAGTTCAAACGCAATCGGTCTACAC 174695
||||||||||| || || | ||| | || |||||| ||| || || ||| | ||
Sbjct 5876 TATGGAAACAATATTATTTTAGGTACCATTATTCCTATTTCTGCAGCTATAGGTTTGCAT 5935
Query 174696 TTCTACCCAATCTGGGAAGCAGCCACACTCGACGAATGGCTCTACAACGGTGGTCCTTTC 174755
|| |||||||| ||||||||| | | | || |||||| | ||||| ||||||||||
Sbjct 5936 TTTTACCCAATATGGGAAGCAACATCTGTTGATGAATGGTTATACAATGGTGGTCCTTAT 5995
Query 174756 CAACTAGTTGTCTTCCACTTCCTTATTGGTATCTACGCCTATATGGGACGTGAGTGGGAA 174815
||||| |||| | |||||| | ||||| | || ||||| ||||||||||||
Sbjct 5996 GAACTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAA 6055
Query 174816 CTCTCTTATCGTTTAGGTATGAGACCTTGGATCTGTGTAGCATACTCTGCACCAGTTGCA 174875
|| || |||| | |||||| || ||||||| ||| ||||| || || || ||||||
Sbjct 6056 CTTAGTTTTCGTCTGGGTATGCGAACTTGGATGGTTGTTGCATATTCAGCTCCTGTTGCA 6115
Query 174876 GCAGCTTCAGCAGTATTCCTAGTCTATCCTTTCGGTCAAGGTTCATTCTCAGACGCGATG 174935
|| || | || ||| | |||| || | |||||||| || || || | |||
Sbjct 6116 GCTGCGAGTGTTGTTTTCTTGATCTACCCAATTGGTCAAGGAAGCTTTTCTGATGGTATG 6175
Query 174936 CCCTTGGGTATCTCTGGAACATTCAACTACATGTTGGTCTTCCAAGCAGAACATAACATC 174995
|| | || || ||||| || ||||||| |||| | || ||||| || || || |||||
Sbjct 6176 CCTCTAGGAATTTCTGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCACAACATT 6235
Query 174996 TTGATGCACCCCTTCCACATGTTGGGAGTCGCAGGTGTCTTCGGTGGTTCATTGTTCTCA 175055
| |||||||| || |||||| | || || || ||||| |||| || || | |||
Sbjct 6236 CTTATGCACCCATTTCACATGCTAGGTGTAGCTGGTGTAATCGGCGGCTCCCTATTCAGT 6295
Query 175056 GCGATGCATGGTTCACTTGTTACCTCTTCACTTGTCCGTGAGACAACTGAAACTGAGTCA 175115
|| ||||||||||| | || ||||||| | || | || || || |||| | | ||
Sbjct 6296 GCTATGCATGGTTCCTTGGTAACCTCTTGTTTGATCAGGGAAACCACAGAAAATAAATCT 6355
Query 175116 CAGAACTATGGTTACAAGTTCGGCCAAGAAGAAGAGACCTATAACATCGTGGCAGCCCAT 175175
|| | ||||||| || || | |||||| || || ||||| ||||| || | |||
Sbjct 6356 GCTAATGAAGGTTACAGATTTGGTCTAGAAGATGAAACTTATAATATCGTAGCCGTTCAT 6415
Query 175176 GGCTACTTCGGTCGTTTGATCTTCCAATACGCTTCATTCAACAACTCACGCTC 175228
|| || || || || |||||||||||||| ||| ||||||||||| || ||
Sbjct 6416 GGTTATTTTGGCCGATTGATCTTCCAATATGCTAGTTTCAACAACTCTCGTTC 6468
>seq169634
Length=720
Score = 248 bits (274), Expect = 1e-60
Identities = 314/429 (73%), Gaps = 2/429 (0%)
Strand=Plus/Minus
Query 174489 ACCAACAATCGTCTTTACGTCGGTTGGTTCGGTGTTCTAATGATTCCTACATTGTTAGCC 174548
||| | || ||||||||| | || ||||| |||||| | ||||| ||||| || || ||
Sbjct 456 ACCGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATCCCTACCTTATTGACC 397
Query 174549 GCAACTGTATGT-TTCATTATCGCTTTCGTGGGTGCTCCCCCAGTGGACATCGACGGAAT 174607
|||||| | ||| || |||||||||||| | | |||||| |||||||| || || || ||
Sbjct 396 GCAACT-TCTGTATTTATTATCGCTTTCATTGCTGCTCCTCCAGTGGATATTGATGGTAT 338
Query 174608 CCGTGAACCAGTAGCTGGTTCACTCATGTATGGAAACAACATCATCTCTGGTGCAGTTGT 174667
|||||||| || ||| || || | ||||||||||| || || || |||| || |
Sbjct 337 TCGTGAACCTGTTTATGGATCTCTAAGTTATGGAAACAATATTATTTCAGGTGTCATTAT 278
Query 174668 TCCTAGTTCAAACGCAATCGGTCTACACTTCTACCCAATCTGGGAAGCAGCCACACTCGA 174727
||||| ||| || || ||| | || || |||||||| ||||||||||| | | ||
Sbjct 277 TCCTACTTCTGCAGCTATAGGTTTGCATTTTTACCCAATATGGGAAGCAGCATCCGTTGA 218
Query 174728 CGAATGGCTCTACAACGGTGGTCCTTTCCAACTAGTTGTCTTCCACTTCCTTATTGGTAT 174787
|||||| | ||||| |||||||||| ||||| |||| | |||||| | ||||| |
Sbjct 217 TGAATGGTTATACAATGGTGGTCCTTATGAACTAATTGTTCTACACTTCTTACTTGGTGT 158
Query 174788 CTACGCCTATATGGGACGTGAGTGGGAACTCTCTTATCGTTTAGGTATGAGACCTTGGAT 174847
|| ||||| |||||||||||||| || ||| | |||||| ||||||||||
Sbjct 157 AGCTTGTTACATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGACCTTGGAT 98
Query 174848 CTGTGTAGCATACTCTGCACCAGTTGCAGCAGCTTCAGCAGTATTCCTAGTCTATCCTTT 174907
||| ||||| || || | |||||||| || | || || ||| | |||| || |
Sbjct 97 TGTTGTTGCATATTCAGCTTCTGTTGCAGCTGCAACTGCTGTTTTCTTGATCTACCCAAT 38
Query 174908 CGGTCAAGG 174916
||||||||
Sbjct 37 TGGTCAAGG 29
>seq250312
Length=8481
Score = 163 bits (180), Expect = 4e-35
Identities = 314/462 (68%), Gaps = 11/462 (2%)
Strand=Plus/Plus
Query 174984 GAACATAACATCTTGATGCACCCCTTCCACATGTTGGGAGTCGCAGGTGTCTTCGGTGGT 175043
|| || ||||| | | |||| | || |||||| | || || || ||||| | || |
Sbjct 1574 GAGCACAACATTCTTAGGCACTCATTTCACATGCTAGGCGTAGCTGGTGTAATTGGCAGC 1633
Query 175044 TCATTGTTCTCAGCGATGCATGGTTCACTTGTTACCTCTTCACTTG-TCCGTGAGACAAC 175102
|| | ||| || |||| |||||| |||| || | | | ||| || | || || ||
Sbjct 1634 TCCCTATTCAGTGCTATGCGTGGTTC-CTTGGTAACCCCTAGTTTGATCAGGGAAACCAC 1692
Query 175103 TGAAACTGAGTCACAGAACTATGGTTACAAGTTCGGCCAAGAAGAAGAGACCTATAACAT 175162
| | ||| | | || | ||||| | ||||| ||||||| ||| | || || ||
Sbjct 1693 AAAGAATGAATAAGCTAATGAAGGTTATATATTCGGTCAAGAAGGAGAAAATTAGAATAT 1752
Query 175163 CGTGGCAGCCCATGGCTACTTCGGTCGTTTGATCTTCCAATACGCTTCATTCAACAACTC 175222
|| || || ||||| || || ||||| |||||||||| | | ||| |||||||||||
Sbjct 1753 TGTAGCCGCTCATGGTTATTTTGGTCGATTGATCTTCCGACATGCTAGTTTCAACAACTC 1812
Query 175223 ACGCTCACTCCACTTCTTCTTAGCCGCATGGCCAGTTGTGGGTATCTGGTTCACCGCACT 175282
||| | | || |||||| |||| | ||||| ||||||||| | | |
Sbjct 1813 ACGTTTTTTACATTTCTTCCTAGCTACTTGGCC---------TATCTGGTTTATTGTGTT 1863
Query 175283 TGGTGTTTCCACAATGGCATTCAACCTCAATGGTTTCAACTTCAACCAGTCTGTTATCGA 175342
||| | ||| ||||| | |||||| |||||||| | ||| | || ||||| ||||
Sbjct 1864 AGGTATCAGCACTATGGCTTACAACCTAAATGGTTTTAGTTTCCATCAATCTGTAGTCGA 1923
Query 175343 CGGACAAGGTAGAGTATTGAACACCTGGGCGGATGTTCTTAACAGAGCTGGTCTTGGGAT 175402
| | ||| || ||| | || || ||||| ||| | ||||| | ||| ||||| ||
Sbjct 1924 CAGTCAATGTCATGTAATTAATACTTGGGCTGATATCATTAACTGTGCTAACCTTGGTAT 1983
Query 175403 GGAAGTAATGCATGAGAGAAATGCACACAACTTCCCACTAGA 175444
|||||| ||| |||| | ||||| || || ||||| |||||
Sbjct 1984 GGAAGTTATGTATGAATGTAATGCTCATAATTTCCCTCTAGA 2025
>seq300680
Length=3790
Score = 127 bits (140), Expect = 3e-24
Identities = 208/297 (70%), Gaps = 2/297 (1%)
Strand=Plus/Minus
Query 174933 ATGCCCTTGGGTATCTCTGGAACATTCAACTACATGTTGGTCTTCCAAGCAGAACATAAC 174992
||||| | || || ||||| || ||||||| |||| | || ||||| | || || |||
Sbjct 658 ATGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATTGTATTCCAGGTTGAGCACAAC 599
Query 174993 ATCTTGATGCACCCCTTCCACATGTTGGGAGTCGCAGGTGTCTTCGGTGGTTCATTGTTC 175052
|| | |||||||| || |||||| | | || || ||||| ||| | || | ||
Sbjct 598 ATTCTTATGCACCCATTTCACATGCTAAGCGTAGCTGGTGTACTCGTCAGCTCCCTATTT 539
Query 175053 TCAGCGATGCATGGTTCACTTGTTACCTCTTCACTTGTCCGTGAGACAACTGAAACTGAG 175112
|| ||||||||||| | || |||||| | || | || || | |||| |||
Sbjct 538 AATGCTATGCATGGTTCCTTGGTAACCTCTAGTTTAATCAG-GAAACCAGAGAAAATGAA 480
Query 175113 TCACAGAACTATGGTTACAAGTTCGGCCAAGAAGAAG-AGACCTATAACATCGTGGCAGC 175171
| || | |||||||| ||||| |||||||||| | || ||||| ||||| || ||
Sbjct 479 TTTGCTAATGAAGGTTACAAATTCGGTCAAGAAGAAGAAAACTTATAATATCGTAGCCGC 420
Query 175172 CCATGGCTACTTCGGTCGTTTGATCTTCCAATACGCTTCATTCAACAACTCACGCTC 175228
||||| || || || || ||| ||||||| || ||| ||||||||||| || ||
Sbjct 419 TCATGGTTATTTTGGCCGATTGGTCTTCCAGTATGCTAGTTTCAACAACTCTCGTTC 363
>seq292072
Length=5858
Score = 102 bits (112), Expect = 1e-16
Identities = 83/101 (82%), Gaps = 0/101 (0%)
Strand=Plus/Minus
Query 176529 GAAGAGACCTATTCGATGGTTACTGCGAACCGCTTCTGGTCGCAAATCTTCGGGGTTGCG 176588
||||| || ||||| ||||| ||||| || ||||| ||||| |||||||| ||||||||
Sbjct 1533 GAAGAAACTTATTCAATGGTCACTGCTAATCGCTTTTGGTCCCAAATCTTTGGGGTTGCC 1474
Query 176589 TTTAGTAATAAGCGTTGGCTTCACTTCTTTATGTTGTTTGT 176629
||| ||||| |||||| | || ||||||||||| |||||
Sbjct 1473 TTTTTCAATAAACGTTGGTTACATTTCTTTATGTTATTTGT 1433
>seq254652
Length=6058
Score = 102 bits (112), Expect = 1e-16
Identities = 171/246 (70%), Gaps = 1/246 (0%)
Strand=Plus/Plus
Query 174636 TATGGAAACAACATCATCTCTGGTGCAGTTGTTCCTAGTTCAAACGCAATCGGTCTACAC 174695
||||||||||| || || || |||| ||| |||||| ||| | || | ||| | ||
Sbjct 711 TATGGAAACAATATTATTTCAGGTGTTGTTATTCCTACTTCTACAGCTACAGGTTTGCAT 770
Query 174696 TTCTACCCAATCTGGGAAGCAGCCACACTCGACGAATGGCTC-TACAACGGTGGTCCTTT 174754
|| |||| ||| | ||||||| | | || |||||| | ||||| ||||||||||
Sbjct 771 TTTTACCTAATATAGGAAGCAACATTTGTTGATGAATGGTTTATACAATGGTGGTCCTTA 830
Query 174755 CCAACTAGTTGTCTTCCACTTCCTTATTGGTATCTACGCCTATATGGGACGTGAGTGGGA 174814
||||| |||| | |||||| | ||||| | || ||||| || ||||||||
Sbjct 831 TGAACTAATTGTACTACACTTCTTACTTGGTGTAGCGTGTTACATGGGTCGCGAGTGGGA 890
Query 174815 ACTCTCTTATCGTTTAGGTATGAGACCTTGGATCTGTGTAGCATACTCTGCACCAGTTGC 174874
||| || ||| | ||| || |||||| ||| ||| ||||| || || || || |
Sbjct 891 ACTTAGTTTCCGTCTGGGTGTGCGACCTTTGATTGTTGTTGCATATTCAGCTCCTATTAC 950
Query 174875 AGCAGC 174880
||| ||
Sbjct 951 AGCTGC 956
>seq33322
Length=15627
Score = 98.7 bits (108), Expect = 1e-15
Identities = 104/137 (76%), Gaps = 0/137 (0%)
Strand=Plus/Plus
Query 176334 GCAGCAATCTTTAGATTCCTATTGTTTCTTCAGGGTTTCCACAACTGGACACTGAACCCC 176393
||||| || ||| |||| | | ||| |||| || || || ||||||||| |||||||
Sbjct 6657 GCAGCTATATTTCGATTTATCCTCTTTTTTCAAGGATTTCATAACTGGACATTGAACCCA 6716
Query 176394 TTCCATATGATGGGAGTTGCTGGTATACTAGGTGGAGCACTACTATCTGCAATCCATGGC 176453
|| ||||||||||||||||| ||| || | |||| || | |||| || || |||||
Sbjct 6717 TTTCATATGATGGGAGTTGCCGGTGTATTGGGTGCTGCTTTGCTATGCGCTATTCATGGT 6776
Query 176454 GTTACTGTTGAAAATAC 176470
| ||| || ||||||||
Sbjct 6777 GCTACCGTAGAAAATAC 6793
>seq58055
Length=1185
Score = 96.9 bits (106), Expect = 5e-15
Identities = 130/181 (72%), Gaps = 0/181 (0%)
Strand=Plus/Plus
Query 176389 ACCCCTTCCATATGATGGGAGTTGCTGGTATACTAGGTGGAGCACTACTATCTGCAATCC 176448
|||| || ||||||||||||||||| ||| || | |||| || | |||| || || |
Sbjct 1 ACCCATTTCATATGATGGGAGTTGCCGGTGTATTGGGTGCTGCTTTGCTATGCGCTATTC 60
Query 176449 ATGGCGTTACTGTTGAAAATACCCTATATGAAGATGGAGAACAGAACAACACCTTCACTG 176508
||| | |||||| |||||||| ||| ||||||||| || || || ||| ||
Sbjct 61 ATGATGCTACTGTAGAAAATACTTTATTTGAAGATGGTGATGGCGCAAATACATTCTGTG 120
Query 176509 CGTTCGATTCCACGCAGGAGGAAGAGACCTATTCGATGGTTACTGCGAACCGCTTCTGGT 176568
| || | | || || | ||||| || ||||| ||||| ||||| || ||||| ||||
Sbjct 121 CTTTTAACCCAACTCAAGCTGAAGAAACTTATTCAATGGTCACTGCTAATCGCTTTTGGT 180
Query 176569 C 176569
|
Sbjct 181 C 181
>seq8631
Length=609
Score = 91.5 bits (100), Expect = 2e-13
Identities = 113/155 (73%), Gaps = 0/155 (0%)
Strand=Plus/Minus
Query 174693 CACTTCTACCCAATCTGGGAAGCAGCCACACTCGACGAATGGCTCTACAACGGTGGTCCT 174752
|| || |||||||| ||||||||||| | | || |||||| | ||||| |||||||||
Sbjct 497 CATTTTTACCCAATATGGGAAGCAGCATCCATTGATGAATGGTTATACAATGGTGGTCCT 438
Query 174753 TTCCAACTAGTTGTCTTCCACTTCCTTATTGGTATCTACGCCTATATGGGACGTGAGTGG 174812
| ||||| |||| | |||||| | ||||| | || ||||| |||||||||
Sbjct 437 TATGAACTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGG 378
Query 174813 GAACTCTCTTATCGTTTAGGTATGAGACCTTGGAT 174847
||||| || ||| | | |||| | ||||||||
Sbjct 377 GAACTTAGTTTCCGTCTGGATATGCGCCCTTGGAT 343
Score = 84.2 bits (92), Expect = 3e-11
Identities = 110/151 (73%), Gaps = 1/151 (1%)
Strand=Plus/Minus
Query 174933 ATGCCCTTGGGTATCTCTGGAACATTCAACTACATGTTGGTCTTCCAAGCAGAACATAAC 174992
||||| | || || ||||| || ||||||| |||| | || ||||| || || || |||
Sbjct 323 ATGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATTGTATTCCAGGCCGAGCACAAC 264
Query 174993 ATCTTGATGCACCCCTTCCACATGTTGGGAGTCGCAGGTGTCTTCGGTGGTTCATTG-TT 175051
|| | |||||||| || |||||| | | || || ||||| ||||| || || | ||
Sbjct 263 ATTCTTATGCACCCATTTCACATGCTAGACGTAGCTGGTGTATTCGGCGGCTCCCTAATT 204
Query 175052 CTCAGCGATGCATGGTTCACTTGTTACCTCT 175082
| || ||||||||||| | || ||||||
Sbjct 203 CAGTGCTATGCATGGTTCCTTGGTAACCTCT 173
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 725696865987280
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