Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Carthamus_20tinctorius_20[genbank_20GCA_5F001633085.1_202016-04-27]
463,906 sequences; 661,937,708 total letters
Query= NC_026928.1
Length=189418
Score E
Sequences producing significant alignments: (Bits) Value
seq107965 322 6e-83
seq169634 223 4e-53
seq300680 181 1e-40
seq250312 168 8e-37
seq10884 140 4e-28
seq8631 138 1e-27
seq58055 120 4e-22
seq264332 100 3e-16
seq254652 89.7 6e-13
seq292072 87.8 2e-12
seq33322 82.4 9e-11
>seq107965
Length=6474
Score = 322 bits (356), Expect = 6e-83
Identities = 427/593 (72%), Gaps = 0/593 (0%)
Strand=Plus/Plus
Query 178017 TATGGCAACAACATCATCTCTGGTGCAGTTGTTCCATCTTCCAACGCAATTGGTCTTCAC 178076
||||| ||||| || || | ||| | || |||| ||| || || ||| | ||
Sbjct 5876 TATGGAAACAATATTATTTTAGGTACCATTATTCCTATTTCTGCAGCTATAGGTTTGCAT 5935
Query 178077 TTCTATCCCATCTGGGAAGCCGCATCACTTGATGAGTGGCTGTATAACGGTGGTCCTTTC 178136
|| || || || |||||||| |||| ||||||| ||| | || || ||||||||||
Sbjct 5936 TTTTACCCAATATGGGAAGCAACATCTGTTGATGAATGGTTATACAATGGTGGTCCTTAT 5995
Query 178137 CAACTCGTAGTATTTCACTTCCTCATTGGTATCTATGCATACATGGGACGTGAGTGGGAA 178196
|||| | || | |||||| | ||||| | | |||||||| ||||||||||||
Sbjct 5996 GAACTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAA 6055
Query 178197 CTTTCATACCGTTTAGGTATGCGCCCCTGGATCTGTGTAGCATACTCTGCTCCAGTAGCA 178256
||| | ||| | |||||||| | ||||| ||| ||||| || ||||| || |||
Sbjct 6056 CTTAGTTTTCGTCTGGGTATGCGAACTTGGATGGTTGTTGCATATTCAGCTCCTGTTGCA 6115
Query 178257 GCAGCATCGGCAGTATTCCTGGTCTATCCTTTCGGTCAAGGTTCATTTTCTGACGCAATG 178316
|| || | || ||| || |||| || | |||||||| |||||||| | |||
Sbjct 6116 GCTGCGAGTGTTGTTTTCTTGATCTACCCAATTGGTCAAGGAAGCTTTTCTGATGGTATG 6175
Query 178317 CCACTTGGCATCTCTGGTACATTCAACTACATGCTTGTTTTCCAAGCAGAACACAACATT 178376
|| || || || |||||||| ||||||| |||| |||| ||||| || || |||||||||
Sbjct 6176 CCTCTAGGAATTTCTGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCACAACATT 6235
Query 178377 CTGATGCACCCCTTCCACATGTTGGGTGTCGCAGGTGTATTCGGTGGTTCACTGTTCAGT 178436
|| |||||||| || |||||| | ||||| || |||||| |||| || || || ||||||
Sbjct 6236 CTTATGCACCCATTTCACATGCTAGGTGTAGCTGGTGTAATCGGCGGCTCCCTATTCAGT 6295
Query 178437 GCAATGCACGGTTCTTTGGTTACATCTTCACTCGTTCGTGAAACGACTGAAACAGAATCA 178496
|| ||||| ||||| ||||| || |||| | | | ||||| || |||| ||||
Sbjct 6296 GCTATGCATGGTTCCTTGGTAACCTCTTGTTTGATCAGGGAAACCACAGAAAATAAATCT 6355
Query 178497 CAGAACTATGGTTATAAGTTCGGACAAGAAGAAGAGACATACAACATCGTTGCAGCACAT 178556
|| | ||||| | || || | |||||| || || || || ||||| || | |||
Sbjct 6356 GCTAATGAAGGTTACAGATTTGGTCTAGAAGATGAAACTTATAATATCGTAGCCGTTCAT 6415
Query 178557 GGCTACTTCGGTCGTTTGATCTTCCAATATGCTTCATTCAACAACTCACGTTC 178609
|| || || || || |||||||||||||||||| ||||||||||| |||||
Sbjct 6416 GGTTATTTTGGCCGATTGATCTTCCAATATGCTAGTTTCAACAACTCTCGTTC 6468
>seq169634
Length=720
Score = 223 bits (246), Expect = 4e-53
Identities = 325/457 (71%), Gaps = 2/457 (0%)
Strand=Plus/Minus
Query 177869 TACCAATAACCGCCTCTATGTCGGTTGGTTCGGCGTACTGATGATTCCAACTCTGTTGGC 177928
|||| | ||||| || || | || ||||| || || ||||||| || || | ||| |
Sbjct 457 TACCGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATCCCTACCTTATTGAC 398
Query 177929 AGCAACTATCTGT-TTCATCGTCGCCTTCGTCGCTGCTCCCCCTGTGGACATCGACGGCA 177987
|||||| ||||| || || |||| ||| | |||||||| || ||||| || || || |
Sbjct 397 CGCAACT-TCTGTATTTATTATCGCTTTCATTGCTGCTCCTCCAGTGGATATTGATGGTA 339
Query 177988 TCCGTGAACCCGTCGCTGGTTCACTCATGTATGGCAACAACATCATCTCTGGTGCAGTTG 178047
| |||||||| || ||| || || | ||||| ||||| || || || |||| ||
Sbjct 338 TTCGTGAACCTGTTTATGGATCTCTAAGTTATGGAAACAATATTATTTCAGGTGTCATTA 279
Query 178048 TTCCATCTTCCAACGCAATTGGTCTTCACTTCTATCCCATCTGGGAAGCCGCATCACTTG 178107
|||| |||| || || ||| | || || || || || |||||||| ||||| |||
Sbjct 278 TTCCTACTTCTGCAGCTATAGGTTTGCATTTTTACCCAATATGGGAAGCAGCATCCGTTG 219
Query 178108 ATGAGTGGCTGTATAACGGTGGTCCTTTCCAACTCGTAGTATTTCACTTCCTCATTGGTA 178167
|||| ||| | || || |||||||||| |||| | || | |||||| | |||||
Sbjct 218 ATGAATGGTTATACAATGGTGGTCCTTATGAACTAATTGTTCTACACTTCTTACTTGGTG 159
Query 178168 TCTATGCATACATGGGACGTGAGTGGGAACTTTCATACCGTTTAGGTATGCGCCCCTGGA 178227
| | |||||||| ||||||||||||||| | |||| | |||||||| || ||||
Sbjct 158 TAGCTTGTTACATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGACCTTGGA 99
Query 178228 TCTGTGTAGCATACTCTGCTCCAGTAGCAGCAGCATCGGCAGTATTCCTGGTCTATCCTT 178287
| ||| ||||| || ||| | || ||||| ||| | || || ||| || |||| ||
Sbjct 98 TTGTTGTTGCATATTCAGCTTCTGTTGCAGCTGCAACTGCTGTTTTCTTGATCTACCCAA 39
Query 178288 TCGGTCAAGGTTCATTTTCTGACGCAATGCCACTTGG 178324
| |||||||| |||||||| | ||||| || ||
Sbjct 38 TTGGTCAAGGAAGCTTTTCTGATGGTATGCCTCTAGG 2
>seq300680
Length=3790
Score = 181 bits (200), Expect = 1e-40
Identities = 227/309 (73%), Gaps = 2/309 (1%)
Strand=Plus/Minus
Query 178302 TTTTCTGACGCAATGCCACTTGGCATCTCTGGTACATTCAACTACATGCTTGTTTTCCAA 178361
|||||||| | ||||| || || || |||||||| ||||||| |||| |||| |||||
Sbjct 670 TTTTCTGATGGTATGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATTGTATTCCAG 611
Query 178362 GCAGAACACAACATTCTGATGCACCCCTTCCACATGTTGGGTGTCGCAGGTGTATTCGGT 178421
| || ||||||||||| |||||||| || |||||| | | || || |||||| |||
Sbjct 610 GTTGAGCACAACATTCTTATGCACCCATTTCACATGCTAAGCGTAGCTGGTGTACTCGTC 551
Query 178422 GGTTCACTGTTCAGTGCAATGCACGGTTCTTTGGTTACATCTTCACTCGTTCGTGAAACG 178481
| || || || | ||| ||||| ||||| ||||| || || | | || |||||
Sbjct 550 AGCTCCCTATTTAATGCTATGCATGGTTCCTTGGTAACCTC-TAGTTTAATCAGGAAACC 492
Query 178482 ACTGAAACAGAATCACAGAACTATGGTTATAAGTTCGGACAAGAAGAAG-AGACATACAA 178540
| |||| |||| || | ||||| || ||||| |||||||||| | || || ||
Sbjct 491 AGAGAAAATGAATTTGCTAATGAAGGTTACAAATTCGGTCAAGAAGAAGAAAACTTATAA 432
Query 178541 CATCGTTGCAGCACATGGCTACTTCGGTCGTTTGATCTTCCAATATGCTTCATTCAACAA 178600
||||| || || ||||| || || || || ||| ||||||| |||||| ||||||||
Sbjct 431 TATCGTAGCCGCTCATGGTTATTTTGGCCGATTGGTCTTCCAGTATGCTAGTTTCAACAA 372
Query 178601 CTCACGTTC 178609
||| |||||
Sbjct 371 CTCTCGTTC 363
>seq250312
Length=8481
Score = 168 bits (186), Expect = 8e-37
Identities = 313/461 (68%), Gaps = 9/461 (2%)
Strand=Plus/Plus
Query 178365 GAACACAACATTCTGATGCACCCCTTCCACATGTTGGGTGTCGCAGGTGTATTCGGTGGT 178424
|| ||||||||||| | |||| | || |||||| | || || || |||||| | || |
Sbjct 1574 GAGCACAACATTCTTAGGCACTCATTTCACATGCTAGGCGTAGCTGGTGTAATTGGCAGC 1633
Query 178425 TCACTGTTCAGTGCAATGCACGGTTCTTTGGTTACATCTTCACTCGTTCGTGAAACGACT 178484
|| || |||||||| |||| ||||| ||||| || || | | | ||||| ||
Sbjct 1634 TCCCTATTCAGTGCTATGCGTGGTTCCTTGGTAACCCCTAGTTTGATCAGGGAAACCACA 1693
Query 178485 GAAACAGAATCACAGAACTATGGTTATAAGTTCGGACAAGAAGAAGAGACATACAACATC 178544
| | |||| | || | ||||||| ||||| ||||||| ||| | || || ||
Sbjct 1694 AAGAATGAATAAGCTAATGAAGGTTATATATTCGGTCAAGAAGGAGAAAATTAGAATATT 1753
Query 178545 GTTGCAGCACATGGCTACTTCGGTCGTTTGATCTTCCAATATGCTTCATTCAACAACTCA 178604
|| || || ||||| || || ||||| |||||||||| | ||||| ||||||||||||
Sbjct 1754 GTAGCCGCTCATGGTTATTTTGGTCGATTGATCTTCCGACATGCTAGTTTCAACAACTCA 1813
Query 178605 CGTTCACTGCACTTCTTCCTCGCAGCATGGCCTGTAGTTGGAATCTGGTTCACCGCACTG 178664
|||| | || |||||||| || | |||||| |||||||| | | |
Sbjct 1814 CGTTTTTTACATTTCTTCCTAGCTACTTGGCCT---------ATCTGGTTTATTGTGTTA 1864
Query 178665 GGCGTAAGCACCATGGCATTTAACCTCAATGGATTCAACTTCAACCAGTCCATCCTCGAC 178724
|| | ||||| ||||| | ||||| ||||| || | ||| | || || | |||||
Sbjct 1865 GGTATCAGCACTATGGCTTACAACCTAAATGGTTTTAGTTTCCATCAATCTGTAGTCGAC 1924
Query 178725 GGACAAGGACGTGTCCTCAACACATGGGCAGACGTGCTCAACCGTGCCGGTCTCGGCATG 178784
| ||| | | ||| | || || ||||| || | | ||| |||| || || |||
Sbjct 1925 AGTCAATGTCATGTAATTAATACTTGGGCTGATATCATTAACTGTGCTAACCTTGGTATG 1984
Query 178785 GAAGTCATGCACGAGCGCAACGCGCACAACTTCCCGCTTGA 178825
||||| ||| | || | || || || || ||||| || ||
Sbjct 1985 GAAGTTATGTATGAATGTAATGCTCATAATTTCCCTCTAGA 2025
>seq10884
Length=5042
Score = 140 bits (154), Expect = 4e-28
Identities = 128/162 (79%), Gaps = 0/162 (0%)
Strand=Plus/Plus
Query 178302 TTTTCTGACGCAATGCCACTTGGCATCTCTGGTACATTCAACTACATGCTTGTTTTCCAA 178361
|||||||| | ||||| || || || |||||||| ||||||| |||| |||| |||||
Sbjct 3789 TTTTCTGATGGTATGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATTGTATTCCAG 3848
Query 178362 GCAGAACACAACATTCTGATGCACCCCTTCCACATGTTGGGTGTCGCAGGTGTATTCGGT 178421
|| || ||||||||||| |||||||| || |||||| | || || || |||||||||||
Sbjct 3849 GCTGAGCACAACATTCTTATGCACCCATTTCACATGCTAGGCGTAGCTGGTGTATTCGGC 3908
Query 178422 GGTTCACTGTTCAGTGCAATGCACGGTTCTTTGGTTACATCT 178463
|| || || |||| ||| || || ||||| | ||| || |||
Sbjct 3909 GGCTCCCTATTCATTGCTATACATGGTTCCTCGGTAACCTCT 3950
>seq8631
Length=609
Score = 138 bits (152), Expect = 1e-27
Identities = 129/163 (79%), Gaps = 1/163 (1%)
Strand=Plus/Minus
Query 178302 TTTTCTGACGCAATGCCACTTGGCATCTCTGGTACATTCAACTACATGCTTGTTTTCCAA 178361
|||| ||| | ||||| || || || |||||||| ||||||| |||| |||| |||||
Sbjct 335 TTTTTTGATGGTATGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATTGTATTCCAG 276
Query 178362 GCAGAACACAACATTCTGATGCACCCCTTCCACATGTTGGGTGTCGCAGGTGTATTCGGT 178421
|| || ||||||||||| |||||||| || |||||| | | || || |||||||||||
Sbjct 275 GCCGAGCACAACATTCTTATGCACCCATTTCACATGCTAGACGTAGCTGGTGTATTCGGC 216
Query 178422 GGTTCACT-GTTCAGTGCAATGCACGGTTCTTTGGTTACATCT 178463
|| || || |||||||| ||||| ||||| ||||| || |||
Sbjct 215 GGCTCCCTAATTCAGTGCTATGCATGGTTCCTTGGTAACCTCT 173
Score = 95.1 bits (104), Expect = 1e-14
Identities = 114/155 (74%), Gaps = 0/155 (0%)
Strand=Plus/Minus
Query 178074 CACTTCTATCCCATCTGGGAAGCCGCATCACTTGATGAGTGGCTGTATAACGGTGGTCCT 178133
|| || || || || |||||||| ||||| ||||||| ||| | || || |||||||||
Sbjct 497 CATTTTTACCCAATATGGGAAGCAGCATCCATTGATGAATGGTTATACAATGGTGGTCCT 438
Query 178134 TTCCAACTCGTAGTATTTCACTTCCTCATTGGTATCTATGCATACATGGGACGTGAGTGG 178193
| |||| | || | |||||| | ||||| | | |||||||| |||||||||
Sbjct 437 TATGAACTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGG 378
Query 178194 GAACTTTCATACCGTTTAGGTATGCGCCCCTGGAT 178228
|||||| | |||| | | ||||||||| |||||
Sbjct 377 GAACTTAGTTTCCGTCTGGATATGCGCCCTTGGAT 343
>seq58055
Length=1185
Score = 120 bits (132), Expect = 4e-22
Identities = 135/181 (75%), Gaps = 0/181 (0%)
Strand=Plus/Plus
Query 179761 ACCCCTTCCATATGATGGGAGTTGCTGGTATACTAGGAGGAGCACTGCTCAGTGCTATCC 179820
|||| || ||||||||||||||||| ||| || | || | || |||| | ||||| |
Sbjct 1 ACCCATTTCATATGATGGGAGTTGCCGGTGTATTGGGTGCTGCTTTGCTATGCGCTATTC 60
Query 179821 ATGGAGTTACTGTAGAGAATACATTGTATGAAGATGGAGAACAAGCAAATACCTTTAAGG 179880
||| | ||||||||| ||||| || | ||||||||| || |||||||| || |
Sbjct 61 ATGATGCTACTGTAGAAAATACTTTATTTGAAGATGGTGATGGCGCAAATACATTCTGTG 120
Query 179881 CGTTTGATTCGACACAGGAAGAAGAGACTTATTCTATGGTCACTGCAAACCGCTTCTGGT 179940
| ||| | | || || | ||||| |||||||| ||||||||||| || ||||| ||||
Sbjct 121 CTTTTAACCCAACTCAAGCTGAAGAAACTTATTCAATGGTCACTGCTAATCGCTTTTGGT 180
Query 179941 C 179941
|
Sbjct 181 C 181
>seq264332
Length=996
Score = 100 bits (110), Expect = 3e-16
Identities = 79/95 (83%), Gaps = 0/95 (0%)
Strand=Plus/Minus
Query 178566 GGTCGTTTGATCTTCCAATATGCTTCATTCAACAACTCACGTTCACTGCACTTCTTCCTC 178625
|| || |||||||||||||||||| ||||||||||| ||||| | || ||||||||
Sbjct 272 GGCCGATTGATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCTTTACATTTCTTCCTA 213
Query 178626 GCAGCATGGCCTGTAGTTGGAATCTGGTTCACCGC 178660
|| || ||||||||||| || ||||||||||| ||
Sbjct 212 GCTGCTTGGCCTGTAGTAGGCATCTGGTTCACTGC 178
>seq254652
Length=6058
Score = 89.7 bits (98), Expect = 6e-13
Identities = 161/234 (69%), Gaps = 1/234 (0%)
Strand=Plus/Plus
Query 178017 TATGGCAACAACATCATCTCTGGTGCAGTTGTTCCATCTTCCAACGCAATTGGTCTTCAC 178076
||||| ||||| || || || |||| ||| |||| |||| | || | ||| | ||
Sbjct 711 TATGGAAACAATATTATTTCAGGTGTTGTTATTCCTACTTCTACAGCTACAGGTTTGCAT 770
Query 178077 TTCTATCCCATCTGGGAAGCCGCATCACTTGATGAGTGGCTG-TATAACGGTGGTCCTTT 178135
|| || | || | |||||| ||| ||||||| ||| | || || ||||||||||
Sbjct 771 TTTTACCTAATATAGGAAGCAACATTTGTTGATGAATGGTTTATACAATGGTGGTCCTTA 830
Query 178136 CCAACTCGTAGTATTTCACTTCCTCATTGGTATCTATGCATACATGGGACGTGAGTGGGA 178195
|||| | ||| | |||||| | ||||| | |||||||| || ||||||||
Sbjct 831 TGAACTAATTGTACTACACTTCTTACTTGGTGTAGCGTGTTACATGGGTCGCGAGTGGGA 890
Query 178196 ACTTTCATACCGTTTAGGTATGCGCCCCTGGATCTGTGTAGCATACTCTGCTCC 178249
|||| | |||| | ||| |||| || | ||| ||| ||||| || |||||
Sbjct 891 ACTTAGTTTCCGTCTGGGTGTGCGACCTTTGATTGTTGTTGCATATTCAGCTCC 944
>seq292072
Length=5858
Score = 87.8 bits (96), Expect = 2e-12
Identities = 80/101 (79%), Gaps = 0/101 (0%)
Strand=Plus/Minus
Query 179901 GAAGAGACTTATTCTATGGTCACTGCAAACCGCTTCTGGTCGCAGATCTTCGGTATTGCA 179960
||||| |||||||| ||||||||||| || ||||| ||||| || ||||| || ||||
Sbjct 1533 GAAGAAACTTATTCAATGGTCACTGCTAATCGCTTTTGGTCCCAAATCTTTGGGGTTGCC 1474
Query 179961 TTTTCTAACAAGCGGTGGCTTCATTTTTTCATGTTGTTTGT 180001
|||| || || || ||| | ||||| || ||||| |||||
Sbjct 1473 TTTTTCAATAAACGTTGGTTACATTTCTTTATGTTATTTGT 1433
>seq33322
Length=15627
Score = 82.4 bits (90), Expect = 9e-11
Identities = 84/110 (76%), Gaps = 0/110 (0%)
Strand=Plus/Plus
Query 179734 TTCAGGGTTTCCACAACTGGACGCTCAACCCCTTCCATATGATGGGAGTTGCTGGTATAC 179793
|||| || || || |||||||| | ||||| || ||||||||||||||||| ||| ||
Sbjct 6685 TTCAAGGATTTCATAACTGGACATTGAACCCATTTCATATGATGGGAGTTGCCGGTGTAT 6744
Query 179794 TAGGAGGAGCACTGCTCAGTGCTATCCATGGAGTTACTGTAGAGAATACA 179843
| || | || |||| | ||||| ||||| | ||| ||||| ||||||
Sbjct 6745 TGGGTGCTGCTTTGCTATGCGCTATTCATGGTGCTACCGTAGAAAATACA 6794
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 602495456381280
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |