Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carthamus_20tinctorius_20[genbank_20GCA_5F001633085.1_202016-04-27] 463,906 sequences; 661,937,708 total letters Query= NC_026928.1 Length=189418 Score E Sequences producing significant alignments: (Bits) Value seq107965 322 6e-83 seq169634 223 4e-53 seq300680 181 1e-40 seq250312 168 8e-37 seq10884 140 4e-28 seq8631 138 1e-27 seq58055 120 4e-22 seq264332 100 3e-16 seq254652 89.7 6e-13 seq292072 87.8 2e-12 seq33322 82.4 9e-11 >seq107965 Length=6474 Score = 322 bits (356), Expect = 6e-83 Identities = 427/593 (72%), Gaps = 0/593 (0%) Strand=Plus/Plus Query 178017 TATGGCAACAACATCATCTCTGGTGCAGTTGTTCCATCTTCCAACGCAATTGGTCTTCAC 178076 ||||| ||||| || || | ||| | || |||| ||| || || ||| | || Sbjct 5876 TATGGAAACAATATTATTTTAGGTACCATTATTCCTATTTCTGCAGCTATAGGTTTGCAT 5935 Query 178077 TTCTATCCCATCTGGGAAGCCGCATCACTTGATGAGTGGCTGTATAACGGTGGTCCTTTC 178136 || || || || |||||||| |||| ||||||| ||| | || || |||||||||| Sbjct 5936 TTTTACCCAATATGGGAAGCAACATCTGTTGATGAATGGTTATACAATGGTGGTCCTTAT 5995 Query 178137 CAACTCGTAGTATTTCACTTCCTCATTGGTATCTATGCATACATGGGACGTGAGTGGGAA 178196 |||| | || | |||||| | ||||| | | |||||||| |||||||||||| Sbjct 5996 GAACTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAA 6055 Query 178197 CTTTCATACCGTTTAGGTATGCGCCCCTGGATCTGTGTAGCATACTCTGCTCCAGTAGCA 178256 ||| | ||| | |||||||| | ||||| ||| ||||| || ||||| || ||| Sbjct 6056 CTTAGTTTTCGTCTGGGTATGCGAACTTGGATGGTTGTTGCATATTCAGCTCCTGTTGCA 6115 Query 178257 GCAGCATCGGCAGTATTCCTGGTCTATCCTTTCGGTCAAGGTTCATTTTCTGACGCAATG 178316 || || | || ||| || |||| || | |||||||| |||||||| | ||| Sbjct 6116 GCTGCGAGTGTTGTTTTCTTGATCTACCCAATTGGTCAAGGAAGCTTTTCTGATGGTATG 6175 Query 178317 CCACTTGGCATCTCTGGTACATTCAACTACATGCTTGTTTTCCAAGCAGAACACAACATT 178376 || || || || |||||||| ||||||| |||| |||| ||||| || || ||||||||| Sbjct 6176 CCTCTAGGAATTTCTGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCACAACATT 6235 Query 178377 CTGATGCACCCCTTCCACATGTTGGGTGTCGCAGGTGTATTCGGTGGTTCACTGTTCAGT 178436 || |||||||| || |||||| | ||||| || |||||| |||| || || || |||||| Sbjct 6236 CTTATGCACCCATTTCACATGCTAGGTGTAGCTGGTGTAATCGGCGGCTCCCTATTCAGT 6295 Query 178437 GCAATGCACGGTTCTTTGGTTACATCTTCACTCGTTCGTGAAACGACTGAAACAGAATCA 178496 || ||||| ||||| ||||| || |||| | | | ||||| || |||| |||| Sbjct 6296 GCTATGCATGGTTCCTTGGTAACCTCTTGTTTGATCAGGGAAACCACAGAAAATAAATCT 6355 Query 178497 CAGAACTATGGTTATAAGTTCGGACAAGAAGAAGAGACATACAACATCGTTGCAGCACAT 178556 || | ||||| | || || | |||||| || || || || ||||| || | ||| Sbjct 6356 GCTAATGAAGGTTACAGATTTGGTCTAGAAGATGAAACTTATAATATCGTAGCCGTTCAT 6415 Query 178557 GGCTACTTCGGTCGTTTGATCTTCCAATATGCTTCATTCAACAACTCACGTTC 178609 || || || || || |||||||||||||||||| ||||||||||| ||||| Sbjct 6416 GGTTATTTTGGCCGATTGATCTTCCAATATGCTAGTTTCAACAACTCTCGTTC 6468 >seq169634 Length=720 Score = 223 bits (246), Expect = 4e-53 Identities = 325/457 (71%), Gaps = 2/457 (0%) Strand=Plus/Minus Query 177869 TACCAATAACCGCCTCTATGTCGGTTGGTTCGGCGTACTGATGATTCCAACTCTGTTGGC 177928 |||| | ||||| || || | || ||||| || || ||||||| || || | ||| | Sbjct 457 TACCGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATCCCTACCTTATTGAC 398 Query 177929 AGCAACTATCTGT-TTCATCGTCGCCTTCGTCGCTGCTCCCCCTGTGGACATCGACGGCA 177987 |||||| ||||| || || |||| ||| | |||||||| || ||||| || || || | Sbjct 397 CGCAACT-TCTGTATTTATTATCGCTTTCATTGCTGCTCCTCCAGTGGATATTGATGGTA 339 Query 177988 TCCGTGAACCCGTCGCTGGTTCACTCATGTATGGCAACAACATCATCTCTGGTGCAGTTG 178047 | |||||||| || ||| || || | ||||| ||||| || || || |||| || Sbjct 338 TTCGTGAACCTGTTTATGGATCTCTAAGTTATGGAAACAATATTATTTCAGGTGTCATTA 279 Query 178048 TTCCATCTTCCAACGCAATTGGTCTTCACTTCTATCCCATCTGGGAAGCCGCATCACTTG 178107 |||| |||| || || ||| | || || || || || |||||||| ||||| ||| Sbjct 278 TTCCTACTTCTGCAGCTATAGGTTTGCATTTTTACCCAATATGGGAAGCAGCATCCGTTG 219 Query 178108 ATGAGTGGCTGTATAACGGTGGTCCTTTCCAACTCGTAGTATTTCACTTCCTCATTGGTA 178167 |||| ||| | || || |||||||||| |||| | || | |||||| | ||||| Sbjct 218 ATGAATGGTTATACAATGGTGGTCCTTATGAACTAATTGTTCTACACTTCTTACTTGGTG 159 Query 178168 TCTATGCATACATGGGACGTGAGTGGGAACTTTCATACCGTTTAGGTATGCGCCCCTGGA 178227 | | |||||||| ||||||||||||||| | |||| | |||||||| || |||| Sbjct 158 TAGCTTGTTACATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGACCTTGGA 99 Query 178228 TCTGTGTAGCATACTCTGCTCCAGTAGCAGCAGCATCGGCAGTATTCCTGGTCTATCCTT 178287 | ||| ||||| || ||| | || ||||| ||| | || || ||| || |||| || Sbjct 98 TTGTTGTTGCATATTCAGCTTCTGTTGCAGCTGCAACTGCTGTTTTCTTGATCTACCCAA 39 Query 178288 TCGGTCAAGGTTCATTTTCTGACGCAATGCCACTTGG 178324 | |||||||| |||||||| | ||||| || || Sbjct 38 TTGGTCAAGGAAGCTTTTCTGATGGTATGCCTCTAGG 2 >seq300680 Length=3790 Score = 181 bits (200), Expect = 1e-40 Identities = 227/309 (73%), Gaps = 2/309 (1%) Strand=Plus/Minus Query 178302 TTTTCTGACGCAATGCCACTTGGCATCTCTGGTACATTCAACTACATGCTTGTTTTCCAA 178361 |||||||| | ||||| || || || |||||||| ||||||| |||| |||| ||||| Sbjct 670 TTTTCTGATGGTATGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATTGTATTCCAG 611 Query 178362 GCAGAACACAACATTCTGATGCACCCCTTCCACATGTTGGGTGTCGCAGGTGTATTCGGT 178421 | || ||||||||||| |||||||| || |||||| | | || || |||||| ||| Sbjct 610 GTTGAGCACAACATTCTTATGCACCCATTTCACATGCTAAGCGTAGCTGGTGTACTCGTC 551 Query 178422 GGTTCACTGTTCAGTGCAATGCACGGTTCTTTGGTTACATCTTCACTCGTTCGTGAAACG 178481 | || || || | ||| ||||| ||||| ||||| || || | | || ||||| Sbjct 550 AGCTCCCTATTTAATGCTATGCATGGTTCCTTGGTAACCTC-TAGTTTAATCAGGAAACC 492 Query 178482 ACTGAAACAGAATCACAGAACTATGGTTATAAGTTCGGACAAGAAGAAG-AGACATACAA 178540 | |||| |||| || | ||||| || ||||| |||||||||| | || || || Sbjct 491 AGAGAAAATGAATTTGCTAATGAAGGTTACAAATTCGGTCAAGAAGAAGAAAACTTATAA 432 Query 178541 CATCGTTGCAGCACATGGCTACTTCGGTCGTTTGATCTTCCAATATGCTTCATTCAACAA 178600 ||||| || || ||||| || || || || ||| ||||||| |||||| |||||||| Sbjct 431 TATCGTAGCCGCTCATGGTTATTTTGGCCGATTGGTCTTCCAGTATGCTAGTTTCAACAA 372 Query 178601 CTCACGTTC 178609 ||| ||||| Sbjct 371 CTCTCGTTC 363 >seq250312 Length=8481 Score = 168 bits (186), Expect = 8e-37 Identities = 313/461 (68%), Gaps = 9/461 (2%) Strand=Plus/Plus Query 178365 GAACACAACATTCTGATGCACCCCTTCCACATGTTGGGTGTCGCAGGTGTATTCGGTGGT 178424 || ||||||||||| | |||| | || |||||| | || || || |||||| | || | Sbjct 1574 GAGCACAACATTCTTAGGCACTCATTTCACATGCTAGGCGTAGCTGGTGTAATTGGCAGC 1633 Query 178425 TCACTGTTCAGTGCAATGCACGGTTCTTTGGTTACATCTTCACTCGTTCGTGAAACGACT 178484 || || |||||||| |||| ||||| ||||| || || | | | ||||| || Sbjct 1634 TCCCTATTCAGTGCTATGCGTGGTTCCTTGGTAACCCCTAGTTTGATCAGGGAAACCACA 1693 Query 178485 GAAACAGAATCACAGAACTATGGTTATAAGTTCGGACAAGAAGAAGAGACATACAACATC 178544 | | |||| | || | ||||||| ||||| ||||||| ||| | || || || Sbjct 1694 AAGAATGAATAAGCTAATGAAGGTTATATATTCGGTCAAGAAGGAGAAAATTAGAATATT 1753 Query 178545 GTTGCAGCACATGGCTACTTCGGTCGTTTGATCTTCCAATATGCTTCATTCAACAACTCA 178604 || || || ||||| || || ||||| |||||||||| | ||||| |||||||||||| Sbjct 1754 GTAGCCGCTCATGGTTATTTTGGTCGATTGATCTTCCGACATGCTAGTTTCAACAACTCA 1813 Query 178605 CGTTCACTGCACTTCTTCCTCGCAGCATGGCCTGTAGTTGGAATCTGGTTCACCGCACTG 178664 |||| | || |||||||| || | |||||| |||||||| | | | Sbjct 1814 CGTTTTTTACATTTCTTCCTAGCTACTTGGCCT---------ATCTGGTTTATTGTGTTA 1864 Query 178665 GGCGTAAGCACCATGGCATTTAACCTCAATGGATTCAACTTCAACCAGTCCATCCTCGAC 178724 || | ||||| ||||| | ||||| ||||| || | ||| | || || | ||||| Sbjct 1865 GGTATCAGCACTATGGCTTACAACCTAAATGGTTTTAGTTTCCATCAATCTGTAGTCGAC 1924 Query 178725 GGACAAGGACGTGTCCTCAACACATGGGCAGACGTGCTCAACCGTGCCGGTCTCGGCATG 178784 | ||| | | ||| | || || ||||| || | | ||| |||| || || ||| Sbjct 1925 AGTCAATGTCATGTAATTAATACTTGGGCTGATATCATTAACTGTGCTAACCTTGGTATG 1984 Query 178785 GAAGTCATGCACGAGCGCAACGCGCACAACTTCCCGCTTGA 178825 ||||| ||| | || | || || || || ||||| || || Sbjct 1985 GAAGTTATGTATGAATGTAATGCTCATAATTTCCCTCTAGA 2025 >seq10884 Length=5042 Score = 140 bits (154), Expect = 4e-28 Identities = 128/162 (79%), Gaps = 0/162 (0%) Strand=Plus/Plus Query 178302 TTTTCTGACGCAATGCCACTTGGCATCTCTGGTACATTCAACTACATGCTTGTTTTCCAA 178361 |||||||| | ||||| || || || |||||||| ||||||| |||| |||| ||||| Sbjct 3789 TTTTCTGATGGTATGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATTGTATTCCAG 3848 Query 178362 GCAGAACACAACATTCTGATGCACCCCTTCCACATGTTGGGTGTCGCAGGTGTATTCGGT 178421 || || ||||||||||| |||||||| || |||||| | || || || ||||||||||| Sbjct 3849 GCTGAGCACAACATTCTTATGCACCCATTTCACATGCTAGGCGTAGCTGGTGTATTCGGC 3908 Query 178422 GGTTCACTGTTCAGTGCAATGCACGGTTCTTTGGTTACATCT 178463 || || || |||| ||| || || ||||| | ||| || ||| Sbjct 3909 GGCTCCCTATTCATTGCTATACATGGTTCCTCGGTAACCTCT 3950 >seq8631 Length=609 Score = 138 bits (152), Expect = 1e-27 Identities = 129/163 (79%), Gaps = 1/163 (1%) Strand=Plus/Minus Query 178302 TTTTCTGACGCAATGCCACTTGGCATCTCTGGTACATTCAACTACATGCTTGTTTTCCAA 178361 |||| ||| | ||||| || || || |||||||| ||||||| |||| |||| ||||| Sbjct 335 TTTTTTGATGGTATGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATTGTATTCCAG 276 Query 178362 GCAGAACACAACATTCTGATGCACCCCTTCCACATGTTGGGTGTCGCAGGTGTATTCGGT 178421 || || ||||||||||| |||||||| || |||||| | | || || ||||||||||| Sbjct 275 GCCGAGCACAACATTCTTATGCACCCATTTCACATGCTAGACGTAGCTGGTGTATTCGGC 216 Query 178422 GGTTCACT-GTTCAGTGCAATGCACGGTTCTTTGGTTACATCT 178463 || || || |||||||| ||||| ||||| ||||| || ||| Sbjct 215 GGCTCCCTAATTCAGTGCTATGCATGGTTCCTTGGTAACCTCT 173 Score = 95.1 bits (104), Expect = 1e-14 Identities = 114/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 178074 CACTTCTATCCCATCTGGGAAGCCGCATCACTTGATGAGTGGCTGTATAACGGTGGTCCT 178133 || || || || || |||||||| ||||| ||||||| ||| | || || ||||||||| Sbjct 497 CATTTTTACCCAATATGGGAAGCAGCATCCATTGATGAATGGTTATACAATGGTGGTCCT 438 Query 178134 TTCCAACTCGTAGTATTTCACTTCCTCATTGGTATCTATGCATACATGGGACGTGAGTGG 178193 | |||| | || | |||||| | ||||| | | |||||||| ||||||||| Sbjct 437 TATGAACTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGG 378 Query 178194 GAACTTTCATACCGTTTAGGTATGCGCCCCTGGAT 178228 |||||| | |||| | | ||||||||| ||||| Sbjct 377 GAACTTAGTTTCCGTCTGGATATGCGCCCTTGGAT 343 >seq58055 Length=1185 Score = 120 bits (132), Expect = 4e-22 Identities = 135/181 (75%), Gaps = 0/181 (0%) Strand=Plus/Plus Query 179761 ACCCCTTCCATATGATGGGAGTTGCTGGTATACTAGGAGGAGCACTGCTCAGTGCTATCC 179820 |||| || ||||||||||||||||| ||| || | || | || |||| | ||||| | Sbjct 1 ACCCATTTCATATGATGGGAGTTGCCGGTGTATTGGGTGCTGCTTTGCTATGCGCTATTC 60 Query 179821 ATGGAGTTACTGTAGAGAATACATTGTATGAAGATGGAGAACAAGCAAATACCTTTAAGG 179880 ||| | ||||||||| ||||| || | ||||||||| || |||||||| || | Sbjct 61 ATGATGCTACTGTAGAAAATACTTTATTTGAAGATGGTGATGGCGCAAATACATTCTGTG 120 Query 179881 CGTTTGATTCGACACAGGAAGAAGAGACTTATTCTATGGTCACTGCAAACCGCTTCTGGT 179940 | ||| | | || || | ||||| |||||||| ||||||||||| || ||||| |||| Sbjct 121 CTTTTAACCCAACTCAAGCTGAAGAAACTTATTCAATGGTCACTGCTAATCGCTTTTGGT 180 Query 179941 C 179941 | Sbjct 181 C 181 >seq264332 Length=996 Score = 100 bits (110), Expect = 3e-16 Identities = 79/95 (83%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 178566 GGTCGTTTGATCTTCCAATATGCTTCATTCAACAACTCACGTTCACTGCACTTCTTCCTC 178625 || || |||||||||||||||||| ||||||||||| ||||| | || |||||||| Sbjct 272 GGCCGATTGATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCTTTACATTTCTTCCTA 213 Query 178626 GCAGCATGGCCTGTAGTTGGAATCTGGTTCACCGC 178660 || || ||||||||||| || ||||||||||| || Sbjct 212 GCTGCTTGGCCTGTAGTAGGCATCTGGTTCACTGC 178 >seq254652 Length=6058 Score = 89.7 bits (98), Expect = 6e-13 Identities = 161/234 (69%), Gaps = 1/234 (0%) Strand=Plus/Plus Query 178017 TATGGCAACAACATCATCTCTGGTGCAGTTGTTCCATCTTCCAACGCAATTGGTCTTCAC 178076 ||||| ||||| || || || |||| ||| |||| |||| | || | ||| | || Sbjct 711 TATGGAAACAATATTATTTCAGGTGTTGTTATTCCTACTTCTACAGCTACAGGTTTGCAT 770 Query 178077 TTCTATCCCATCTGGGAAGCCGCATCACTTGATGAGTGGCTG-TATAACGGTGGTCCTTT 178135 || || | || | |||||| ||| ||||||| ||| | || || |||||||||| Sbjct 771 TTTTACCTAATATAGGAAGCAACATTTGTTGATGAATGGTTTATACAATGGTGGTCCTTA 830 Query 178136 CCAACTCGTAGTATTTCACTTCCTCATTGGTATCTATGCATACATGGGACGTGAGTGGGA 178195 |||| | ||| | |||||| | ||||| | |||||||| || |||||||| Sbjct 831 TGAACTAATTGTACTACACTTCTTACTTGGTGTAGCGTGTTACATGGGTCGCGAGTGGGA 890 Query 178196 ACTTTCATACCGTTTAGGTATGCGCCCCTGGATCTGTGTAGCATACTCTGCTCC 178249 |||| | |||| | ||| |||| || | ||| ||| ||||| || ||||| Sbjct 891 ACTTAGTTTCCGTCTGGGTGTGCGACCTTTGATTGTTGTTGCATATTCAGCTCC 944 >seq292072 Length=5858 Score = 87.8 bits (96), Expect = 2e-12 Identities = 80/101 (79%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 179901 GAAGAGACTTATTCTATGGTCACTGCAAACCGCTTCTGGTCGCAGATCTTCGGTATTGCA 179960 ||||| |||||||| ||||||||||| || ||||| ||||| || ||||| || |||| Sbjct 1533 GAAGAAACTTATTCAATGGTCACTGCTAATCGCTTTTGGTCCCAAATCTTTGGGGTTGCC 1474 Query 179961 TTTTCTAACAAGCGGTGGCTTCATTTTTTCATGTTGTTTGT 180001 |||| || || || ||| | ||||| || ||||| ||||| Sbjct 1473 TTTTTCAATAAACGTTGGTTACATTTCTTTATGTTATTTGT 1433 >seq33322 Length=15627 Score = 82.4 bits (90), Expect = 9e-11 Identities = 84/110 (76%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 179734 TTCAGGGTTTCCACAACTGGACGCTCAACCCCTTCCATATGATGGGAGTTGCTGGTATAC 179793 |||| || || || |||||||| | ||||| || ||||||||||||||||| ||| || Sbjct 6685 TTCAAGGATTTCATAACTGGACATTGAACCCATTTCATATGATGGGAGTTGCCGGTGTAT 6744 Query 179794 TAGGAGGAGCACTGCTCAGTGCTATCCATGGAGTTACTGTAGAGAATACA 179843 | || | || |||| | ||||| ||||| | ||| ||||| |||||| Sbjct 6745 TGGGTGCTGCTTTGCTATGCGCTATTCATGGTGCTACCGTAGAAAATACA 6794 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 602495456381280