Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carthamus_20tinctorius_20[genbank_20GCA_5F001633085.1_202016-04-27] 463,906 sequences; 661,937,708 total letters Query= NC_027130.1 Length=172688 Score E Sequences producing significant alignments: (Bits) Value seq107965 291 9e-74 seq300680 190 2e-43 seq250312 167 3e-36 seq10884 141 1e-28 seq8631 134 2e-26 seq36621 123 3e-23 seq58055 105 7e-18 seq264332 104 3e-17 seq33322 93.3 5e-14 seq292072 87.8 2e-12 seq449122 86.0 7e-12 seq231965 82.4 8e-11 >seq107965 Length=6474 Score = 291 bits (322), Expect = 9e-74 Identities = 397/554 (72%), Gaps = 0/554 (0%) Strand=Plus/Plus Query 158592 GCAATTGGTCTTCACTTCTATCCCATCTGGGAAGCCGCATCACTTGATGAGTGGCTGTAT 158651 || || ||| | || || || || || |||||||| |||| ||||||| ||| | || Sbjct 5921 GCTATAGGTTTGCATTTTTACCCAATATGGGAAGCAACATCTGTTGATGAATGGTTATAC 5980 Query 158652 AACGGTGGTCCTTTCCAACTCGTAGTCTTTCACTTCCTTATCGGCATCTATGCATATATG 158711 || |||||||||| |||| | || | |||||| | | || | | || ||| Sbjct 5981 AATGGTGGTCCTTATGAACTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTACATG 6040 Query 158712 GGACGTGAATGGGAACTTTCATACCGCTTAGGTATGCGCCCCTGGATCTGTGTAGCATAT 158771 || ||||| ||||||||| | || | |||||||| | ||||| ||| |||||| Sbjct 6041 GGTCGTGAGTGGGAACTTAGTTTTCGTCTGGGTATGCGAACTTGGATGGTTGTTGCATAT 6100 Query 158772 TCTGCACCAGTCGCTGCAGCATCTGCTGTATTCCTCGTCTATCCTTTCGGTCAAGGTTCT 158831 || || || || || || || || ||| ||| | |||| || | |||||||| Sbjct 6101 TCAGCTCCTGTTGCAGCTGCGAGTGTTGTTTTCTTGATCTACCCAATTGGTCAAGGAAGC 6160 Query 158832 TTCTCCGATGCTATGCCTCTTGGTATCTCTGGTACTTTTAACTACATGCTTGTATTCCAA 158891 || || |||| ||||||||| || || ||||||||||| |||| |||| |||||||||| Sbjct 6161 TTTTCTGATGGTATGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATTGTATTCCAG 6220 Query 158892 GCAGAACACAACATCCTTATGCACCCGTTCCATATGCTCGGTGTTGCTGGGGTATTCGGT 158951 || || |||||||| ||||||||||| || || ||||| ||||| ||||| ||| |||| Sbjct 6221 GCTGAGCACAACATTCTTATGCACCCATTTCACATGCTAGGTGTAGCTGGTGTAATCGGC 6280 Query 158952 GGATCTCTTTTCTCTGCTATGCATGGAAGTCTCGTTACTTCCTCACTCGTTCGTGAAACG 159011 || || || ||| |||||||||||| | || || || | | | | ||||| Sbjct 6281 GGCTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAACCTCTTGTTTGATCAGGGAAACC 6340 Query 159012 ACTGAAACAGAGTCACAGAACTATGGTTACAAGTTCGGACAAGAAGAAGAAACATATAAT 159071 || |||| | || || | ||||||| || || | |||||| ||||| |||||| Sbjct 6341 ACAGAAAATAAATCTGCTAATGAAGGTTACAGATTTGGTCTAGAAGATGAAACTTATAAT 6400 Query 159072 ATCGTCGCAGCCCATGGTTACTTCGGTCGTTTGATCTTCCAATACGCTTCATTCAACAAC 159131 ||||| || | |||||||| || || || |||||||||||||| ||| ||||||||| Sbjct 6401 ATCGTAGCCGTTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCTAGTTTCAACAAC 6460 Query 159132 TCCCGTTCCTTGCA 159145 || ||||| || || Sbjct 6461 TCTCGTTCTTTACA 6474 >seq300680 Length=3790 Score = 190 bits (210), Expect = 2e-43 Identities = 235/319 (74%), Gaps = 2/319 (1%) Strand=Plus/Minus Query 158832 TTCTCCGATGCTATGCCTCTTGGTATCTCTGGTACTTTTAACTACATGCTTGTATTCCAA 158891 || || |||| ||||||||| || || ||||||||||| |||| |||| |||||||||| Sbjct 670 TTTTCTGATGGTATGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATTGTATTCCAG 611 Query 158892 GCAGAACACAACATCCTTATGCACCCGTTCCATATGCTCGGTGTTGCTGGGGTATTCGGT 158951 | || |||||||| ||||||||||| || || ||||| | || ||||| ||| ||| Sbjct 610 GTTGAGCACAACATTCTTATGCACCCATTTCACATGCTAAGCGTAGCTGGTGTACTCGTC 551 Query 158952 GGATCTCTTTTCTCTGCTATGCATGGAAGTCTCGTTACTTCCTCACTCGTTCGTGAAACG 159011 | || || || |||||||||||| | || || | || | || ||||| Sbjct 550 AGCTCCCTATTTAATGCTATGCATGGTTCCTTGGTAACCT-CTAGTTTAATCAGGAAACC 492 Query 159012 ACTGAAACAGAGTCACAGAACTATGGTTACAAGTTCGGACAAGAAGAAG-AAACATATAA 159070 | |||| || | || | |||||||| ||||| |||||||||| |||| ||||| Sbjct 491 AGAGAAAATGAATTTGCTAATGAAGGTTACAAATTCGGTCAAGAAGAAGAAAACTTATAA 432 Query 159071 TATCGTCGCAGCCCATGGTTACTTCGGTCGTTTGATCTTCCAATACGCTTCATTCAACAA 159130 |||||| || || |||||||| || || || ||| ||||||| || ||| |||||||| Sbjct 431 TATCGTAGCCGCTCATGGTTATTTTGGCCGATTGGTCTTCCAGTATGCTAGTTTCAACAA 372 Query 159131 CTCCCGTTCCTTGCACTTC 159149 ||| ||||| || || ||| Sbjct 371 CTCTCGTTCTTTACATTTC 353 >seq250312 Length=8481 Score = 167 bits (184), Expect = 3e-36 Identities = 318/465 (68%), Gaps = 15/465 (3%) Strand=Plus/Plus Query 158895 GAACACAACATCCTTATGCACCCGTTCCATATGCTCGGTGTTGCTGGGGTATTCGGTGGA 158954 || |||||||| |||| |||| | || || ||||| || || ||||| ||| | || | Sbjct 1574 GAGCACAACATTCTTAGGCACTCATTTCACATGCTAGGCGTAGCTGGTGTAATTGGCAGC 1633 Query 158955 TCTCTTTTCTCTGCTATGCATGGAAGTCTCGTTACTTCCTCACTCGTTC-GTGAAACGAC 159013 || || ||| |||||||| ||| | || || ||| | | || | ||||| || Sbjct 1634 TCCCTATTCAGTGCTATGCGTGGTTCCTTGGTAACC-CCTAGTTTGATCAGGGAAACCAC 1692 Query 159014 TGAAACAGAGTCACAGAACTATGGTTACAAGTTCGGACAAGAAGAAGAAACATATAATAT 159073 | | || | | || | ||||| | ||||| ||||||| ||||| || ||||| Sbjct 1693 AAAGAATGAATAAGCTAATGAAGGTTATATATTCGGTCAAGAAGGAGAAAATTAGAATAT 1752 Query 159074 CGTCGCAGCCCATGGTTACTTCGGTCGTTTGATCTTCCAATACGCTTCATTCAACAACTC 159133 || || || |||||||| || ||||| |||||||||| | | ||| ||||||||||| Sbjct 1753 TGTAGCCGCTCATGGTTATTTTGGTCGATTGATCTTCCGACATGCTAGTTTCAACAACTC 1812 Query 159134 CCGTTCCTTGCACTTCTTCCTTGCTGCATGGCCTGTTGTCGGCATCTGGTTCACCGCCCT 159193 |||| || || |||||||| ||| | |||||| |||||||| | | | Sbjct 1813 ACGTTTTTTACATTTCTTCCTAGCTACTTGGCCT---------ATCTGGTTTATTGTGTT 1863 Query 159194 TGGCGTGTCA--ACCATGGCATTCAACCTGAACGGTTTCAACTTCAACCAGTCCATCCTT 159251 | || ||| || ||||| | |||||| || ||||| | ||| | || || | | Sbjct 1864 AG--GTATCAGCACTATGGCTTACAACCTAAATGGTTTTAGTTTCCATCAATCTGTAGTC 1921 Query 159252 GATGGTCAGGGTCGTGTGTTGAACACCTGGGCAGATGTACTGAACCGTGCAGGTCTGGGT 159311 || |||| ||| ||| | || || ||||| ||| | | ||| |||| || ||| Sbjct 1922 GACAGTCAATGTCATGTAATTAATACTTGGGCTGATATCATTAACTGTGCTAACCTTGGT 1981 Query 159312 ATGGAAGTTATGCATGAGCGTAACGCACACAACTTCCCACTCGAC 159356 |||||||||||| |||| |||| || || || ||||| || ||| Sbjct 1982 ATGGAAGTTATGTATGAATGTAATGCTCATAATTTCCCTCTAGAC 2026 >seq10884 Length=5042 Score = 141 bits (156), Expect = 1e-28 Identities = 119/146 (82%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 158832 TTCTCCGATGCTATGCCTCTTGGTATCTCTGGTACTTTTAACTACATGCTTGTATTCCAA 158891 || || |||| ||||||||| || || ||||||||||| |||| |||| |||||||||| Sbjct 3789 TTTTCTGATGGTATGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATTGTATTCCAG 3848 Query 158892 GCAGAACACAACATCCTTATGCACCCGTTCCATATGCTCGGTGTTGCTGGGGTATTCGGT 158951 || || |||||||| ||||||||||| || || ||||| || || ||||| |||||||| Sbjct 3849 GCTGAGCACAACATTCTTATGCACCCATTTCACATGCTAGGCGTAGCTGGTGTATTCGGC 3908 Query 158952 GGATCTCTTTTCTCTGCTATGCATGG 158977 || || || ||| |||||| ||||| Sbjct 3909 GGCTCCCTATTCATTGCTATACATGG 3934 >seq8631 Length=609 Score = 134 bits (148), Expect = 2e-26 Identities = 115/141 (82%), Gaps = 1/141 (1%) Strand=Plus/Minus Query 158838 GATGCTATGCCTCTTGGTATCTCTGGTACTTTTAACTACATGCTTGTATTCCAAGCAGAA 158897 |||| ||||||||| || || ||||||||||| |||| |||| |||||||||| || || Sbjct 329 GATGGTATGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATTGTATTCCAGGCCGAG 270 Query 158898 CACAACATCCTTATGCACCCGTTCCATATGCTCGGTGTTGCTGGGGTATTCGGTGGATCT 158957 |||||||| ||||||||||| || || ||||| | || ||||| |||||||| || || Sbjct 269 CACAACATTCTTATGCACCCATTTCACATGCTAGACGTAGCTGGTGTATTCGGCGGCTCC 210 Query 158958 CT-TTTCTCTGCTATGCATGG 158977 || ||| |||||||||||| Sbjct 209 CTAATTCAGTGCTATGCATGG 189 >seq36621 Length=13842 Score = 123 bits (136), Expect = 3e-23 Identities = 217/311 (70%), Gaps = 5/311 (2%) Strand=Plus/Minus Query 159057 GAAGAAACATATAATATCGTCGCAGCCCATGGTTACTTCGGTCGTTTGATCTTCCAATAC 159116 |||||||| ||||||||||| || |||||||| || | | | ||||||||| |||| Sbjct 7968 GAAGAAACTTATAATATCGTATATGCTCATGGTTATTTGGCT-GATTGATCTTCTAATAT 7910 Query 159117 GCTTCATTCAACAACTCCCGTTCCTTGCACTTCTTCCTTGCTGCATGGCCTGTTGTCGGC 159176 ||| |||||| |||| | || | | || || || ||||| ||||||||| | || Sbjct 7909 GCTAGTTTCAACGACTCTCATTTTATATATTTTTTTCTAGCTGCTTGGCCTGTTTTTGGT 7850 Query 159177 ATCTGGTTCACCGCCCTTGGCGTGTCAACC--ATGGCATTCAACCTGAACGGTTTCAACT 159234 || |||||||| || |||| || | | ||||| |||||||| || |||| || Sbjct 7849 ATATGGTTCACTGCG-TTGG-GTACTAGCATTATGGCTTTCAACCTAAATGGTTGAAATC 7792 Query 159235 TCAACCAGTCCATCCTTGATGGTCAGGGTCGTGTGTTGAACACCTGGGCAGATGTACTGA 159294 ||||| | | ||||| |||| | ||||| |||| || || | ||| | | Sbjct 7791 GAAACCAATTGGTAGTTGATAGTCACAGCCGTGTAATGAATACTTGAGGTGATATCAGTA 7732 Query 159295 ACCGTGCAGGTCTGGGTATGGAAGTTATGCATGAGCGTAACGCACACAACTTCCCACTCG 159354 ||| ||| || | |||| | ||||||||||| ||||| || || || | ||| || | Sbjct 7731 ACCATGCTAACCTTGTTATGAATGTTATGCATGAACGTAATGCTCATAATTCCCCTCTAG 7672 Query 159355 ACCTTGCTGCT 159365 || | |||||| Sbjct 7671 ACTTGGCTGCT 7661 >seq58055 Length=1185 Score = 105 bits (116), Expect = 7e-18 Identities = 132/181 (73%), Gaps = 0/181 (0%) Strand=Plus/Plus Query 160437 ACCCCTTCCATATGATGGGAGTTGCTGGTATACTAGGAGGAGCACTGCTCAGTGCCATCC 160496 |||| || ||||||||||||||||| ||| || | || | || |||| | || || | Sbjct 1 ACCCATTTCATATGATGGGAGTTGCCGGTGTATTGGGTGCTGCTTTGCTATGCGCTATTC 60 Query 160497 ATGGCGTTACTGTAGAGAACACACTGTATGAAGATGGAGAACAAGCAAATACCTTTAAGG 160556 ||| | ||||||||| || || | | ||||||||| || |||||||| || | Sbjct 61 ATGATGCTACTGTAGAAAATACTTTATTTGAAGATGGTGATGGCGCAAATACATTCTGTG 120 Query 160557 CGTTTGATTCGACACAGGAAGAAGAGACTTATTCTATGGTCACTGCAAACCGCTTCTGGT 160616 | ||| | | || || | ||||| |||||||| ||||||||||| || ||||| |||| Sbjct 121 CTTTTAACCCAACTCAAGCTGAAGAAACTTATTCAATGGTCACTGCTAATCGCTTTTGGT 180 Query 160617 C 160617 | Sbjct 181 C 181 >seq264332 Length=996 Score = 104 bits (114), Expect = 3e-17 Identities = 80/95 (84%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 159096 GGTCGTTTGATCTTCCAATACGCTTCATTCAACAACTCCCGTTCCTTGCACTTCTTCCTT 159155 || || |||||||||||||| ||| ||||||||||| ||||| || || |||||||| Sbjct 272 GGCCGATTGATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCTTTACATTTCTTCCTA 213 Query 159156 GCTGCATGGCCTGTTGTCGGCATCTGGTTCACCGC 159190 ||||| |||||||| || |||||||||||||| || Sbjct 212 GCTGCTTGGCCTGTAGTAGGCATCTGGTTCACTGC 178 >seq33322 Length=15627 Score = 93.3 bits (102), Expect = 5e-14 Identities = 104/139 (75%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 160382 GCAGCAATCTTTAGATTCCTGTTGTTCCTTCAAGGATTTCACAACTGGACGCTTAACCCC 160441 ||||| || ||| |||| | | || ||||||||||||| |||||||| | ||||| Sbjct 6657 GCAGCTATATTTCGATTTATCCTCTTTTTTCAAGGATTTCATAACTGGACATTGAACCCA 6716 Query 160442 TTCCATATGATGGGAGTTGCTGGTATACTAGGAGGAGCACTGCTCAGTGCCATCCATGGC 160501 || ||||||||||||||||| ||| || | || | || |||| | || || ||||| Sbjct 6717 TTTCATATGATGGGAGTTGCCGGTGTATTGGGTGCTGCTTTGCTATGCGCTATTCATGGT 6776 Query 160502 GTTACTGTAGAGAACACAC 160520 | ||| ||||| || |||| Sbjct 6777 GCTACCGTAGAAAATACAC 6795 >seq292072 Length=5858 Score = 87.8 bits (96), Expect = 2e-12 Identities = 80/101 (79%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 160577 GAAGAGACTTATTCTATGGTCACTGCAAACCGCTTCTGGTCGCAGATCTTCGGTATTGCG 160636 ||||| |||||||| ||||||||||| || ||||| ||||| || ||||| || |||| Sbjct 1533 GAAGAAACTTATTCAATGGTCACTGCTAATCGCTTTTGGTCCCAAATCTTTGGGGTTGCC 1474 Query 160637 TTTTCTAACAAGCGGTGGCTTCATTTTTTCATGTTGTTTGT 160677 |||| || || || ||| | ||||| || ||||| ||||| Sbjct 1473 TTTTTCAATAAACGTTGGTTACATTTCTTTATGTTATTTGT 1433 >seq449122 Length=870 Score = 86.0 bits (94), Expect = 7e-12 Identities = 67/80 (84%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 159038 TTACAAGTTCGGACAAGAAGAAGAAACATATAATATCGTCGCAGCCCATGGTTACTTCGG 159097 ||||| ||||| |||||||||||||| || |||||||| || || |||||||| || || Sbjct 176 TTACAGATTCGGTCAAGAAGAAGAAACTTACAATATCGTAGCCGCTCATGGTTATTTTGG 235 Query 159098 TCGTTTGATCTTCCAATACG 159117 | |||||||||||||||| Sbjct 236 CCAATTGATCTTCCAATACG 255 >seq231965 Length=7494 Score = 82.4 bits (90), Expect = 8e-11 Identities = 129/185 (70%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 158751 CCCTGGATCTGTGTAGCATATTCTGCACCAGTCGCTGCAGCATCTGCTGTATTCCTCGTC 158810 || ||||| ||| |||||| | || | || || | || ||| ||| ||| | || Sbjct 6582 CCTTGGATTATTGTTGCATATCCAGCTCTTGTTGCAACTGCGACTGATGTTTTCTTGATC 6641 Query 158811 TATCCTTTCGGTCAAGGTTCTTTCTCCGATGCTATGCCTCTTGGTATCTCTGGTACTTTT 158870 || || | ||||| | || || ||| ||| ||||| || || | ||||||||| Sbjct 6642 TACCCAATTTGTCAATGAAGCTTTTCTCATGGTATTCCTCTAGGAATTTATGGTACTTTC 6701 Query 158871 AACTACATGCTTGTATTCCAAGCAGAACACAACATCCTTATGCACCCGTTCCATATGCTC 158930 |||| |||| ||||||| | | || |||||||| ||||||||||| || | ||||| Sbjct 6702 AACTTCATGATTGTATTTAAGGTTGAGCACAACATTCTTATGCACCCATTTTACATGCTA 6761 Query 158931 GGTGT 158935 || || Sbjct 6762 GGCGT 6766 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 549269902276480