Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Carthamus_20tinctorius_20[genbank_20GCA_5F001633085.1_202016-04-27]
463,906 sequences; 661,937,708 total letters
Query= NC_027213.1
Length=214699
Score E
Sequences producing significant alignments: (Bits) Value
seq180108 141 1e-28
seq161111 134 2e-26
seq288533 100 4e-16
seq293582 89.7 7e-13
>seq180108
Length=14591
Score = 141 bits (156), Expect = 1e-28
Identities = 165/222 (74%), Gaps = 3/222 (1%)
Strand=Plus/Plus
Query 69751 CCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACCA 69810
||||| || || | || | |||||| | ||| |||| | || ||| |||||||| |||
Sbjct 8328 CCTCCTTGGTCAACATAACGGGCAGTATCATTGAAGACACGCAACATTGGAATAATGCCA 8387
Query 69811 TTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGAT 69870
|| ||| |||||||||||||| || |||||||| |||| ||||||||| || |||
Sbjct 8388 TTGGATGTACCATTTGTTCCACGTATGTAACTTCCAGTTGCACGAATATTATGAACAGAG 8447
Query 69871 AGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATATA 69930
| ||| ||||||||||| ||| ||| | |||||| || || |||||||||||
Sbjct 8448 ACACCAATTCCTCCTGC---TTTGCTGATAACAGCACATTCCTTGAAAGTGTCATATATG 8504
Query 69931 CCCTCTATGCTATCATCTATCATGTTAAGAAGAAAACAGCTA 69972
|| || ||||||||| || ||||| | || || ||||||
Sbjct 8505 CCTTCAATGCTATCACCTTTCATGCATATCAGGAAGCAGCTA 8546
>seq161111
Length=12134
Score = 134 bits (148), Expect = 2e-26
Identities = 163/222 (73%), Gaps = 0/222 (0%)
Strand=Plus/Minus
Query 69751 CCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACCA 69810
||||| || || | || | || || | ||| |||| | || ||| |||||||| |||
Sbjct 5271 CCTCCTTGGTCAACATAACGAGCTGTATCATTGAAGACACGCAACATTGGAATAATGCCA 5212
Query 69811 TTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGAT 69870
|| ||| | |||||||||||| || |||||||| ||| || |||||| || |||
Sbjct 5211 TTGGATGTGCCATTTGTTCCACGTATGTAACTTCCAGTTGAACGGATATTATGAACAGAG 5152
Query 69871 AGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATATA 69930
| ||| ||||||||||| ||| ||| | |||||| ||||| |||||||||||
Sbjct 5151 ACACCAATTCCTCCTGCTGATTTGCTGATAACAGCACATTCCTTCAAAGTGTCATATATG 5092
Query 69931 CCCTCTATGCTATCATCTATCATGTTAAGAAGAAAACAGCTA 69972
|| || |||||||||||| ||||| | ||||| ||||||
Sbjct 5091 CCTTCAATGCTATCATCTTTCATGCATATCAGAAAGCAGCTA 5050
>seq288533
Length=1307
Score = 100 bits (110), Expect = 4e-16
Identities = 117/158 (74%), Gaps = 0/158 (0%)
Strand=Plus/Minus
Query 69751 CCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACCA 69810
||||| || || | || | || ||| | ||| |||| | || ||| |||||||| |||
Sbjct 758 CCTCCTTGGTCAACATAACGGGAAGTATCATTGAAGACACGCAACATTGGAATAATGCCA 699
Query 69811 TTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGAT 69870
|| ||| |||||||||||||| | || ||||||||| ||| | |||||| || |||
Sbjct 698 TTGGATGTACCATTTGTTCCACATATGTAACTTCCTGTTGAATGGATATTATGAACAGAG 639
Query 69871 AGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACA 69908
| ||| ||||||||||| ||| ||| | ||||||
Sbjct 638 ACACCAATTCCTCCTGCTGATTTGCTGATAACAGCACA 601
>seq293582
Length=2029
Score = 89.7 bits (98), Expect = 7e-13
Identities = 104/138 (75%), Gaps = 2/138 (1%)
Strand=Plus/Plus
Query 39611 ATTAAGCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAAT 39670
|| ||||| ||||| || || || ||||| || || || || |||||||| || ||
Sbjct 1291 ATCAAGCACGCGAAATCGCAGTGCAGGCCTTCGTCCCTCGAGATCAATTCGTTGGAGAAC 1350
Query 39671 GTGAGTCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGAT-CCAGA 39729
|| || || ||||| || || ||||| |||||||| || ||||| ||| ||| | || ||
Sbjct 1351 GTTAGGCCCGGCATCAGGCCGCGCTTCTTGAGCCAGAAGATGGC-GCAGAAGCTTCCGGA 1409
Query 39730 AAAGAAGATGCCTTCTAC 39747
||||||||||| || ||
Sbjct 1410 GAAGAAGATGCCCTCGAC 1427
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 682925536077840
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |