Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carthamus_20tinctorius_20[genbank_20GCA_5F001633085.1_202016-04-27] 463,906 sequences; 661,937,708 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq294625 100 2e-16 >seq294625 Length=4757 Score = 100 bits (110), Expect = 2e-16 Identities = 249/373 (67%), Gaps = 4/373 (1%) Strand=Plus/Minus Query 43914 AAGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAATA 43973 |||| |||||| | | || || || ||| || || || || || || || || || | Sbjct 4447 AAGAGGTTCAAGTCGCCGAGGCTCGTGCTTTCTACGGATTCCAGATCGCAATCGAGAACA 4388 Query 43974 TTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGATGGGCACGAGAAGC 44033 |||| || || |||||||| | || | || || |||||||| || |||| ||| Sbjct 4387 TTCACTCCGAGATGTACAGCTTGCTCCTCGAGACCTACATCAAGGACTCCAACGACAAGA 4328 Query 44034 ATCGATTGTTTAATGCGATAGAAACAGTACCT-GCGATTAAACATAAAGCAGACTGGGCC 44092 | ||||| || | || || | ||| ||| | | | || || | ||||| Sbjct 4327 TGAGGCTGTTTCGCGCTGTGGAGACCATTCCTTGCGTCCAGA-AGAAGGCCAATTGGGCG 4269 Query 44093 CTTAAATGGATAAATTCAAATGATTCTTTTGGAGAACGACTTGTCGCGTTTGCAGTTGTG 44152 | | ||||| || || || |||| ||||| | | || || || || Sbjct 4268 ATGAGGTGGATCGATGGCTCGGAGTCGTTTGCGGAACGTATCATTGCCTTCGCTTGCGTC 4209 Query 44153 GAAGGCATTTTCTTTTCAGGATCGTT-TGCGGCCATATTTTGGTTAAAGAAACGAGGTTT 44211 ||||| || ||||| || ||| || |||| | || || ||||| |||||||| ||||| Sbjct 4208 GAAGGGATATTCTTCTCGGGAAGCTTCTGCG-CTATCTTCTGGTTGAAGAAACGCGGTTT 4150 Query 44212 GATGCCTGGGTTGACGTTTTCAAATGAGTTAATAAGTCGTGATGAAGGCTTACATTGCGA 44271 ||||||||| ||||| || || || ||||| || || || ||||| ||||| ||||| Sbjct 4149 GATGCCTGGATTGACCTTCTCCAACGAGTTGATTTCACGAGACGAAGGATTACACTGCGA 4090 Query 44272 TTTTGCTTGCTTG 44284 ||| || |||||| Sbjct 4089 TTTCGCCTGCTTG 4077 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395208841655530