Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carthamus_20tinctorius_20[genbank_20GCA_5F001633085.1_202016-04-27] 463,906 sequences; 661,937,708 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq259261 98.7 8e-16 seq284040 95.1 1e-14 seq228143 95.1 1e-14 seq243249 93.3 4e-14 seq156932 87.8 2e-12 seq25275 82.4 6e-11 >seq259261 Length=7884 Score = 98.7 bits (108), Expect = 8e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 || || || || || || ||||||||| | | | | |||| ||||||||||| ||| Sbjct 2572 GTGGACTCCTTCTGGATGTTGTAGTCGGCTAGGGTCCTGCCGTCCTCGAGCTGTTTCCCG 2513 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 ||| | ||||| ||||| || |||||||| | || || || || ||||||| ||| Sbjct 2512 GCGAAGATGAGGCGCTGCTGGTCCGGCGGGATGCCTTCCTTGTCCTGGATCTTGGCCTTC 2453 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | | || | ||||| | || ||| || || | || || | || ||||| || ||| Sbjct 2452 ACGTTGTCGATCGTGTCGGAGGATTCGACCTCCAACGTGATCGTCTTCCCCGTTAGGGTT 2393 Query 27231 TTCACAAAGATTTGCAT 27247 ||||| ||||| ||||| Sbjct 2392 TTCACGAAGATCTGCAT 2376 >seq284040 Length=2693 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 ||||| | |||||||| |||| ||| ||||| || || || || || ||||| ||| | Sbjct 985 CCTCCCCTCAACCGCAGAACCAGATGCAACGTGGACTCCTTCTGGATGTTGTAATCGGCC 926 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | | | ||||||||||||| || |||||| | || | |||||| || ||||| || Sbjct 925 AAAGTCCTTCCGTCTTCGAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGGTCCGGTGGG 866 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200 | || || || || ||||| |||| | | || | ||||| | | ||| || Sbjct 865 ATTCCTTCCTTGTCCTGAATCTTCGCCTTCACGTTATCGATCGTGTCGGAGCTTTCCACC 806 Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || | || || | ||| || |||| || ||||| ||||| ||||| Sbjct 805 TCCAACGTGATCGTTTTTCCGGTCAACGTCTTCACGAAGATCTGCAT 759 >seq228143 Length=6931 Score = 95.1 bits (104), Expect = 1e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCG 27098 ||||| || | || || || || || || ||||||||| | | | || ||||||| Sbjct 2849 ACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGCAAGGGTTCGGCCGTCTTCC 2790 Query 27099 AGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCG 27158 ||||| || |||||| |||| || | ||| || || || || | || ||||| || | Sbjct 2789 AGCTGCTTTCCGGCGAAAATAAGTCTCTGCTGGTCTGGAGGGATGCCTTCTTTGTCTTGG 2730 Query 27159 ATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTG 27218 |||||| || | | | || | ||||| | | ||||||||||| || || | || Sbjct 2729 ATCTTGGCCTTGACGTTGTCAATGGTGTCGGAGCTTTCAACTTCTAATGTGATGGTCTTT 2670 Query 27219 CCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 || |||| ||||||||||| || |||||| Sbjct 2669 CCGGTCAAGGTTTTCACAAAAATCTGCATA 2640 >seq243249 Length=1014 Score = 93.3 bits (102), Expect = 4e-14 Identities = 137/193 (71%), Gaps = 11/193 (6%) Strand=Plus/Plus Query 27054 GAGTCTTTTTGAATATTGTAGTCG-CTCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGC 27112 || || ||||| || |||||||| || ||| || |||| ||||||||||| ||||| Sbjct 759 GACTCCTTTTGGATGCTGTAGTCGGCTAGGGTTCTGC-CGTCCTCGAGCTGTTTTCCGGC 817 Query 27113 GTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTCAG 27172 | | ||||| || || || |||||||| | || || || ||||| ||||| Sbjct 818 GAAGATGAGCCGTTGCTGGTCCGGCGGGATGCCTTCCTTGTCGGC---------TTTCAC 868 Query 27173 GGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTT 27232 | | | | ||||| | || ||||| || | ||||| | ||||| || |||||||| Sbjct 869 GTTGTAGATGGTGTCGGAGGACTCAACCTCCAACGTTATGGTCTTGCCGGTTAGAGTTTT 928 Query 27233 CACAAAGATTTGC 27245 ||||||||| ||| Sbjct 929 CACAAAGATCTGC 941 >seq156932 Length=6713 Score = 87.8 bits (96), Expect = 2e-12 Identities = 147/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGT-TGCGCTCGTCTTC 27097 ||||| || | || || || || || || |||||||| | || | | || |||| || Sbjct 4003 ACCAAGTGGAGGGTTGACTCCTTCTGGATGTTGTAGTC-CGCAAGAGTACGGCCGTCCTC 4061 Query 27098 GAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGC 27157 ||| |||||||||||| | || | ||||| || || || || | || || || || Sbjct 4062 GAGTTGTTTACCGGCGAAGATCAATCGCTGCTGGTCTGGGGGGATGCCTTCCTTGTCTTG 4121 Query 27158 GATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTT 27217 ||||||| || | | | || | ||||| | | ||| ||||| ||||| || | ||| Sbjct 4122 GATCTTGGCCTTGACGTTGTCGATGGTGTCAGAGCTTTCTACTTCAAGAGTGATGGTTTT 4181 Query 27218 GCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 ||| |||| || || || ||||||||||| Sbjct 4182 GCCGGTCAAGGTCTTGACGAAGATTTGCAT 4211 >seq25275 Length=8276 Score = 82.4 bits (90), Expect = 6e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCG 27098 ||||| || | || || || || || || ||||| ||| || |||| |||| ||| Sbjct 5227 ACCAAGTGAAGGGTGGACTCCTTCTGTATGTTGTAATCGGCCAAAGTGCGACCGTCCTCG 5168 Query 27099 AGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCG 27158 ||||| || ||||| | || | | ||| || || || || | |||||| || || | Sbjct 5167 AGCTGCTTGCCGGCAAAGATCAACCTCTGCTGGTCTGGGGGAATACCCTCCTTGTCTTGG 5108 Query 27159 ATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTG 27218 || || |||| | | || | |||||| | | || ||||| | || || | ||| Sbjct 5107 ATTTTCGCCTTCACGTTATCGATAGTGTCCGAGCTCTCGACTTCCAACGTGATGGTTTTC 5048 Query 27219 CCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 || || || ||||| ||||||||||||||| Sbjct 5047 CCTGTTAGGGTTTTGACAAAGATTTGCATA 5018 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 422531882783472