Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Carthamus_20tinctorius_20[genbank_20GCA_5F001633085.1_202016-04-27]
463,906 sequences; 661,937,708 total letters
Query= NC_027923.1
Length=132831
Score E
Sequences producing significant alignments: (Bits) Value
seq259261 98.7 8e-16
seq284040 95.1 1e-14
seq228143 95.1 1e-14
seq243249 93.3 4e-14
seq156932 87.8 2e-12
seq25275 82.4 6e-11
>seq259261
Length=7884
Score = 98.7 bits (108), Expect = 8e-16
Identities = 140/197 (71%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110
|| || || || || || ||||||||| | | | | |||| ||||||||||| |||
Sbjct 2572 GTGGACTCCTTCTGGATGTTGTAGTCGGCTAGGGTCCTGCCGTCCTCGAGCTGTTTCCCG 2513
Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170
||| | ||||| ||||| || |||||||| | || || || || ||||||| |||
Sbjct 2512 GCGAAGATGAGGCGCTGCTGGTCCGGCGGGATGCCTTCCTTGTCCTGGATCTTGGCCTTC 2453
Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230
| | | || | ||||| | || ||| || || | || || | || ||||| || |||
Sbjct 2452 ACGTTGTCGATCGTGTCGGAGGATTCGACCTCCAACGTGATCGTCTTCCCCGTTAGGGTT 2393
Query 27231 TTCACAAAGATTTGCAT 27247
||||| ||||| |||||
Sbjct 2392 TTCACGAAGATCTGCAT 2376
>seq284040
Length=2693
Score = 95.1 bits (104), Expect = 1e-14
Identities = 157/227 (69%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080
||||| | |||||||| |||| ||| ||||| || || || || || ||||| ||| |
Sbjct 985 CCTCCCCTCAACCGCAGAACCAGATGCAACGTGGACTCCTTCTGGATGTTGTAATCGGCC 926
Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140
| | | ||||||||||||| || |||||| | || | |||||| || ||||| ||
Sbjct 925 AAAGTCCTTCCGTCTTCGAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGGTCCGGTGGG 866
Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200
| || || || || ||||| |||| | | || | ||||| | | ||| ||
Sbjct 865 ATTCCTTCCTTGTCCTGAATCTTCGCCTTCACGTTATCGATCGTGTCGGAGCTTTCCACC 806
Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247
|| | || || | ||| || |||| || ||||| ||||| |||||
Sbjct 805 TCCAACGTGATCGTTTTTCCGGTCAACGTCTTCACGAAGATCTGCAT 759
>seq228143
Length=6931
Score = 95.1 bits (104), Expect = 1e-14
Identities = 147/210 (70%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCG 27098
||||| || | || || || || || || ||||||||| | | | || |||||||
Sbjct 2849 ACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGCAAGGGTTCGGCCGTCTTCC 2790
Query 27099 AGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCG 27158
||||| || |||||| |||| || | ||| || || || || | || ||||| || |
Sbjct 2789 AGCTGCTTTCCGGCGAAAATAAGTCTCTGCTGGTCTGGAGGGATGCCTTCTTTGTCTTGG 2730
Query 27159 ATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTG 27218
|||||| || | | | || | ||||| | | ||||||||||| || || | ||
Sbjct 2729 ATCTTGGCCTTGACGTTGTCAATGGTGTCGGAGCTTTCAACTTCTAATGTGATGGTCTTT 2670
Query 27219 CCCGTCAGAGTTTTCACAAAGATTTGCATA 27248
|| |||| ||||||||||| || ||||||
Sbjct 2669 CCGGTCAAGGTTTTCACAAAAATCTGCATA 2640
>seq243249
Length=1014
Score = 93.3 bits (102), Expect = 4e-14
Identities = 137/193 (71%), Gaps = 11/193 (6%)
Strand=Plus/Plus
Query 27054 GAGTCTTTTTGAATATTGTAGTCG-CTCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGC 27112
|| || ||||| || |||||||| || ||| || |||| ||||||||||| |||||
Sbjct 759 GACTCCTTTTGGATGCTGTAGTCGGCTAGGGTTCTGC-CGTCCTCGAGCTGTTTTCCGGC 817
Query 27113 GTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTCAG 27172
| | ||||| || || || |||||||| | || || || ||||| |||||
Sbjct 818 GAAGATGAGCCGTTGCTGGTCCGGCGGGATGCCTTCCTTGTCGGC---------TTTCAC 868
Query 27173 GGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTT 27232
| | | | ||||| | || ||||| || | ||||| | ||||| || ||||||||
Sbjct 869 GTTGTAGATGGTGTCGGAGGACTCAACCTCCAACGTTATGGTCTTGCCGGTTAGAGTTTT 928
Query 27233 CACAAAGATTTGC 27245
||||||||| |||
Sbjct 929 CACAAAGATCTGC 941
>seq156932
Length=6713
Score = 87.8 bits (96), Expect = 2e-12
Identities = 147/210 (70%), Gaps = 2/210 (1%)
Strand=Plus/Plus
Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGT-TGCGCTCGTCTTC 27097
||||| || | || || || || || || |||||||| | || | | || |||| ||
Sbjct 4003 ACCAAGTGGAGGGTTGACTCCTTCTGGATGTTGTAGTC-CGCAAGAGTACGGCCGTCCTC 4061
Query 27098 GAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGC 27157
||| |||||||||||| | || | ||||| || || || || | || || || ||
Sbjct 4062 GAGTTGTTTACCGGCGAAGATCAATCGCTGCTGGTCTGGGGGGATGCCTTCCTTGTCTTG 4121
Query 27158 GATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTT 27217
||||||| || | | | || | ||||| | | ||| ||||| ||||| || | |||
Sbjct 4122 GATCTTGGCCTTGACGTTGTCGATGGTGTCAGAGCTTTCTACTTCAAGAGTGATGGTTTT 4181
Query 27218 GCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247
||| |||| || || || |||||||||||
Sbjct 4182 GCCGGTCAAGGTCTTGACGAAGATTTGCAT 4211
>seq25275
Length=8276
Score = 82.4 bits (90), Expect = 6e-11
Identities = 144/210 (69%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCG 27098
||||| || | || || || || || || ||||| ||| || |||| |||| |||
Sbjct 5227 ACCAAGTGAAGGGTGGACTCCTTCTGTATGTTGTAATCGGCCAAAGTGCGACCGTCCTCG 5168
Query 27099 AGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCG 27158
||||| || ||||| | || | | ||| || || || || | |||||| || || |
Sbjct 5167 AGCTGCTTGCCGGCAAAGATCAACCTCTGCTGGTCTGGGGGAATACCCTCCTTGTCTTGG 5108
Query 27159 ATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTG 27218
|| || |||| | | || | |||||| | | || ||||| | || || | |||
Sbjct 5107 ATTTTCGCCTTCACGTTATCGATAGTGTCCGAGCTCTCGACTTCCAACGTGATGGTTTTC 5048
Query 27219 CCCGTCAGAGTTTTCACAAAGATTTGCATA 27248
|| || || ||||| |||||||||||||||
Sbjct 5047 CCTGTTAGGGTTTTGACAAAGATTTGCATA 5018
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 422531882783472
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |