Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carthamus_20tinctorius_20[genbank_20GCA_5F001633085.1_202016-04-27] 463,906 sequences; 661,937,708 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq275305 120 4e-22 seq162260 93.3 5e-14 seq180108 89.7 6e-13 seq294625 87.8 2e-12 seq161111 84.2 3e-11 seq293582 82.4 1e-10 >seq275305 Length=4240 Score = 120 bits (132), Expect = 4e-22 Identities = 276/416 (66%), Gaps = 0/416 (0%) Strand=Plus/Minus Query 11483 TCAAGGATATCCACGCGATTAGTGGCCGCAATAACCACAATGCCAGTCTCATTGTCAAAG 11542 ||||| ||||| | || || || || |||| || | ||| || || | |||||| Sbjct 3664 TCAAGAATATCTGCACGGTTGGTAGCTGCAACTACAATAATACCTGTGTTCCCTTCAAAG 3605 Query 11543 CCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGGCATA 11602 |||||||||||||| | | || || | ||||||||||| |||||||| | | Sbjct 3604 CCATCCATCTCGGTCAAAAGCTGGTTCAGCGTTTGTTCTCTTTCATCATTCCCACCTCCA 3545 Query 11603 CCACCAGCACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACAATACATGGT 11662 ||||| | | |||| || || |||||||| ||||||| || |||||||| || Sbjct 3544 ATACCAGTCCCCCTTTGCCGCCCAACAGCATCAATTTCATCAACAAACACAATACAAGGA 3485 Query 11663 TGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACACCAACAAAC 11722 ||| || ||| | | |||||||| | ||| ||| ||||| |||||||||||| Sbjct 3484 GCATTCTCCTTGGCCTTCTTGAAGAGATCTCTAACTCTTGAAGCACCAACACCAACAAAC 3425 Query 11723 ATCTCCACAAAGTTTGCGGCAGAGCACTGGATGAATGGGACATTTGATTCACCCGCGATG 11782 ||||| ||||| | | | || || || || ||| || |||||| || ||| Sbjct 3424 ATCTCAACAAACTCCGAACCCGAAATAGAGAAAAACGGAACACCTGCTTCACCAGCAATG 3365 Query 11783 GCTCGGGCGAGGAGGGTCTTTCCCGTACCTGGCTTACCCGCGAGAAGGGCGCCTCGGGGG 11842 || || || || || ||||| || || || |||| | ||||| | || || Sbjct 3364 GCCTTTGCTAGCAGTGTTTTTCCAGTTCCCGGAGGACCCACAAGAAGAACACCCTTCGGA 3305 Query 11843 ATCTTGGCACCACTTCCAAAATATCTCTCGGGTTGCTTGAGAAAATCCACAATCTC 11898 ||| |||||| || | ||||| || | ||| ||||| || |||| ||| Sbjct 3304 ATCCGAGCACCAACAGCAGTGAACCTCTCTGGCTTCTTTAGAAACTCGACAACCTC 3249 >seq162260 Length=11445 Score = 93.3 bits (102), Expect = 5e-14 Identities = 189/280 (68%), Gaps = 8/280 (3%) Strand=Plus/Plus Query 11539 AAAGCCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGG 11598 ||| || ||||||||||| | || ||||||||| |||||||| || ||||||||| | Sbjct 7906 AAACCCGTCCATCTCGGTCAATAGTTGATTAATCGTTTGTTCCCTTTCATCATTTCCACC 7965 Query 11599 CATACCACCAGCACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACAATACA 11658 | |||||||| | |||| | || || ||||| |||||||| || || ||||| || Sbjct 7966 ACCAAGACCAGCACCTCTTTGCCTTCCTACAGCATCTATCTCATCTATAAACACAATGCA 8025 Query 11659 TGG----TTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACAC 11714 ||| || |||| || | ||||| | ||| ||||| | || || || | Sbjct 8026 TGGCGCCTTCGATTTC----GCCTTCTCAAACAAATCTCGAACTCGAGAAGCCCCAACGC 8081 Query 11715 CAACAAACATCTCCACAAAGTTTGCGGCAGAGCACTGGATGAATGGGACATTTGATTCAC 11774 | ||||||| ||| || || | | || | ||| || || || || | || | Sbjct 8082 CCACAAACAACTCAACGAACTCGGACGCGGCACACGAGAAAAACGGCACGCCGGCCTCTC 8141 Query 11775 CCGCGATGGCTCGGGCGAGGAGGGTCTTTCCCGTACCTGG 11814 | || | ||||| || | ||||||||||| || || || Sbjct 8142 CGGCCACCGCTCGAGCCAAAAGGGTCTTTCCGGTCCCCGG 8181 >seq180108 Length=14591 Score = 89.7 bits (98), Expect = 6e-13 Identities = 162/230 (70%), Gaps = 8/230 (3%) Strand=Plus/Plus Query 111941 TGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCT-TG 111999 || || |||||||| ||||||||||||||||| || | || ||| ||||| |||| || Sbjct 8705 TGGGGCCTTGGTGTTCCAGCATTGAAGAGGGTGGGAGAAGCATGAGTGAAC-CACCTCTG 8763 Query 112000 GGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATTGC 112059 |||||| || || ||| | ||||||||||| | ||| || || || | ||| Sbjct 8764 TGACATCAAGTGATAAGTCCTGATAACAGAATCAATATTATCCTTATGAATCCCAACTGC 8823 Query 112060 GACCCGCATGAACATGTACTGTGGGGTTTCCATGAGGATGCCATCGAGCCGTTGA--AGA 112117 |||| ||| | ||| | || || |||| | | | || | || | || | ||| Sbjct 8824 AACCCTCATCAGCATATGTTGAGGCCTTTCAACAACTTTCCCTTGGATC--TTCAATAGA 8881 Query 112118 T-AGCTCTTCTCAAGGGTTTTGAGACCAAAGTAACCAAAATCATAGTCCC 112166 | || || ||||||||||||| | |||||| ||| || | ||| |||||| Sbjct 8882 TAAGATC-TCTCAAGGGTTTTAAAACCAAAATAATCATAGTCAAAGTCCC 8930 >seq294625 Length=4757 Score = 87.8 bits (96), Expect = 2e-12 Identities = 135/192 (70%), Gaps = 7/192 (4%) Strand=Plus/Plus Query 122677 CCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGAGACCCCGCTTC 122736 || || ||||| ||||| | || || |||||| | || ||||| | ||| || ||| Sbjct 4102 CCTTCGTCTCGTGAAATCAACTCGTTGGAGAAGGTCAATCCAGGCATCAAACCGCGTTTC 4161 Query 122737 TTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACACGCAAAC 122796 |||||||| | ||||||||||| || |||||||| || || || || || || || Sbjct 4162 TTCAACCAGAAGATAGCGCAGAAGCTTCCCGAGAAGAATATCCCTTCGACGCAAGCGAAG 4221 Query 122797 GCAAAAAGGCGTTCGGCGAAGGA--GCGAGACTTTGCATCAAACCATTTCATTGCCCATT 122854 |||| | ||||| || || || |||| |||| | ||| |||| ||||| | Sbjct 4222 GCAATGATACGTTCCGCAAACGACTCCGAG-----CCATCGATCCACCTCATCGCCCAAT 4276 Query 122855 TCGCCTTCTTCT 122866 | |||||||||| Sbjct 4277 TGGCCTTCTTCT 4288 >seq161111 Length=12134 Score = 84.2 bits (92), Expect = 3e-11 Identities = 161/230 (70%), Gaps = 8/230 (3%) Strand=Plus/Minus Query 111941 TGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCT-TG 111999 || || |||||||| ||||||||||||||||| || | || ||| ||||| |||| || Sbjct 4907 TGGGGCCTTGGTGTTCCAGCATTGAAGAGGGTGGGAGAAGCATGAGTGAAC-CACCTCTG 4849 Query 112000 GGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATTGC 112059 |||||| || || ||| | |||||||| |||| ||| || || || | || Sbjct 4848 TGACATCAAGTGATAAGTCCTGATTACAGAATCGATGTTATCCTTATGAATTCCAACTGA 4789 Query 112060 GACCCGCATGAACATGTACTGTGGGGTTTCCATGAGGATGCCATCGAGCCGTTGA--AGA 112117 |||| ||| | ||| | || || |||| | | | || | || | || | ||| Sbjct 4788 AACCCTCATCAGCATATGTTGAGGCCTTTCAACAACTTTCCCTTGGATC--TTCAATAGA 4731 Query 112118 T-AGCTCTTCTCAAGGGTTTTGAGACCAAAGTAACCAAAATCATAGTCCC 112166 | || || ||||||||||||| | |||||| ||| || | ||| |||||| Sbjct 4730 TAAGATC-TCTCAAGGGTTTTAAAACCAAAATAATCATAGTCAAAGTCCC 4682 >seq293582 Length=2029 Score = 82.4 bits (90), Expect = 1e-10 Identities = 108/150 (72%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 122670 GTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGAGACC 122729 ||| || || || || | || || | ||| || ||||| ||| || ||||| || || Sbjct 1311 GTGCAGGCCTTCGTCCCTCGAGATCAATTCGTTGGAGAACGTTAGGCCCGGCATCAGGCC 1370 Query 122730 CCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACA 122789 |||||||| | ||| | || |||||||| |||||||||||||| ||||| ||||| Sbjct 1371 GCGCTTCTTGAGCCAGAAGATGGCGCAGAAGCTTCCGGAGAAGAAGATGCCCTCGACACA 1430 Query 122790 CGCAAACGCAAAAAGGCGTTCGGCGAAGGA 122819 || || || | | || || |||||||| Sbjct 1431 GGCGAAGGCGACGATCCGCTCCGCGAAGGA 1460 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 624390152337600