Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carthamus_20tinctorius_20[genbank_20GCA_5F001633085.1_202016-04-27] 463,906 sequences; 661,937,708 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq275305 104 3e-17 seq294625 102 1e-16 seq293582 102 1e-16 >seq275305 Length=4240 Score = 104 bits (114), Expect = 3e-17 Identities = 179/257 (70%), Gaps = 10/257 (4%) Strand=Plus/Minus Query 14095 GTCAAGGATATCAATGCGGTTCGTCGCCGCGATGACAACGATGCCCGTCTCGTTATCAAA 14154 |||||| ||||| ||||| || || || | |||| || || || | ||||| Sbjct 3665 GTCAAGAATATCTGCACGGTTGGTAGCTGCAACTACAATAATACCTGTGTTCCCTTCAAA 3606 Query 14155 GCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCGCGTTCATCATTCGCA---GG 14211 |||||||||||| ||||| || || || | |||||||| | |||||||||| || Sbjct 3605 GCCATCCATCTCGGTCAAAAGCTGGTTCAGCGTTTGTTCTCTTTCATCATTCCCACCTCC 3546 Query 14212 CATACCACCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCATCGATGAAAACGATACA 14271 |||||| | | || |||| || || || ||||||||||| | || || ||||| Sbjct 3545 AATACCAGTCCCCCT---TTGCCGCCCAACAGCATCAATTTCATCAACAAACACAATACA 3489 Query 14272 TGGTTGATTTTCACGGGCAACTTC--AAAGATATCTCGCACTCTCTTGGCACCGACACCC 14329 || ||| || ||| |||| |||| ||||| ||||| ||||| ||||| Sbjct 3488 AGGAGCATTCTCCTTGGC--CTTCTTGAAGAGATCTCTAACTCTTGAAGCACCAACACCA 3431 Query 14330 ACAAACATCTCCACAAA 14346 ||||||||||| ||||| Sbjct 3430 ACAAACATCTCAACAAA 3414 >seq294625 Length=4757 Score = 102 bits (112), Expect = 1e-16 Identities = 179/257 (70%), Gaps = 9/257 (4%) Strand=Plus/Plus Query 130034 CCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTC 130093 || ||||| || || || | || || |||||| || || ||||| | ||| || ||| Sbjct 4102 CCTTCGTCTCGTGAAATCAACTCGTTGGAGAAGGTCAATCCAGGCATCAAACCGCGTTTC 4161 Query 130094 TTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACACGCGAAC 130153 ||||||||||| || || || || || |||||||| ||||| || || || ||||| Sbjct 4162 TTCAACCAGAAGATAGCGCAGAAGCTTCCCGAGAAGAATATCCCTTCGACGCAAGCGAAG 4221 Query 130154 GCAAAGAGACGCTCAGCAAAGGA--GCGGGACTTTGTATCAAACCACTTCATCGCCCACT 130211 |||| || ||| || ||||| || || | | ||| | |||| |||||||||| | Sbjct 4222 GCAATGATACGTTCCGCAAACGACTCCGAGCC-----ATCGATCCACCTCATCGCCCAAT 4276 Query 130212 GCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAAAGAGTTCCTTCTTTTCTG 130271 ||||| |||| || || || | ||||| | || ||| || | |||| || | Sbjct 4277 TGGCCTTCTTCTGGACGCAAGGAATGGTCTCCACAGCGCGAAACAGCCTCATCTTGTC-G 4335 Query 130272 ATGGA-TCTTTGATGTA 130287 |||| || |||||||| Sbjct 4336 TTGGAGTCCTTGATGTA 4352 >seq293582 Length=2029 Score = 102 bits (112), Expect = 1e-16 Identities = 368/565 (65%), Gaps = 13/565 (2%) Strand=Plus/Plus Query 129728 TAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCATA 129787 || |||||||||| ||||||||||||||| |||||||| | ||| || |||||| Sbjct 1012 TACTCCCCAACCCTCTTCTCGAAGAAGTTCGTCTTCCCCTGCAACGAAATCAGCTCCATC 1071 Query 129788 AAATCAAATGGGTTCTTTGAGTTCCAAAT-TGCTGGCACTCCAATCTGTTTGAGGAGACG 129846 ||||||| || |||| || | || | | | || |||| | | | || Sbjct 1072 CAATCAAACGGATTCTGCACCTTGTACATCTTCCCGTACCCCAA-CGCCACCAACAACCG 1130 Query 129847 ATCCGAGACGTACTCAATGTACTCAGACATCTTCTCGGAGTTCATACCGATGAGGTTACA 129906 ||||| ||| |||| || ||| |||| ||| |||||| || | || ||| Sbjct 1131 ATCCGCCACGAACTCGATATACGTGCTCATCAGATCGCCGTTCATCCCCACCAGACCACA 1190 Query 129907 TGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGCACGATGGCGTG 129966 || |||||||| | | ||| || |||| || ||||| || ||| ||| || | Sbjct 1191 CGGCAGCGCGTCGCACACAAACTCCCTCTCGATCTCCACCGCGTCCGCCACAATCTTCTT 1250 Query 129967 AATGGTCTCCGTGC-CAGGTCTAT--TGCGCAAAGTCTTGAAGAGTTCCACGGCAAACTC 130023 || |||| || ||| | || | |||| | || | |||| ||| || Sbjct 1251 AACCCGCTCCTCGCTCAGCTTCATGTTCAACAAACCGTAGATCAAG--CACGCGAAA-TC 1307 Query 130024 CTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAG 130083 ||| || || ||||| | ||||| | ||| || ||||| || || ||||| || Sbjct 1308 GCAGTGCAGGCCTTCGTCCCTCGAGATCAATTCGTTGGAGAACGTTAGGCCCGGCATCAG 1367 Query 130084 ACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCAC 130143 || |||||||| | |||||| || || || || || ||||||||||| ||||| || Sbjct 1368 GCCGCGCTTCTTGAGCCAGAAGATGGCGCAGAAGCTTCCGGAGAAGAAGATGCCCTCGAC 1427 Query 130144 ACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGGGACTTTGTATCAAACCACTTCAT 130203 ||| ||||| || | || ||||| || ||||| |||| || | ||| | Sbjct 1428 ACAGGCGAAGGCGACGATCCGCTCCGCGAAGGACTCGGAC---CCGTCGATCCAGCGGAG 1484 Query 130204 CGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAAAGAGTTCCTT 130263 |||||||| ||||| || ||| || |||| ||||| | || | || || || Sbjct 1485 GGCCCACTGGGCCTTCCGCTGGATGCAGGGGATGGTCTCCACGGCGTGGAACAGCCGGTT 1544 Query 130264 CTTTTCTGATGGA-TCTTTGATGTA 130287 ||| || | |||| || |||||||| Sbjct 1545 CTTCTC-GTTGGAGTCCTTGATGTA 1568 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 614849002501360