Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Carthamus_20tinctorius_20[genbank_20GCA_5F001633085.1_202016-04-27]
463,906 sequences; 661,937,708 total letters
Query= NC_028092.1
Length=193301
Score E
Sequences producing significant alignments: (Bits) Value
seq275305 104 3e-17
seq294625 102 1e-16
seq293582 102 1e-16
>seq275305
Length=4240
Score = 104 bits (114), Expect = 3e-17
Identities = 179/257 (70%), Gaps = 10/257 (4%)
Strand=Plus/Minus
Query 14095 GTCAAGGATATCAATGCGGTTCGTCGCCGCGATGACAACGATGCCCGTCTCGTTATCAAA 14154
|||||| ||||| ||||| || || || | |||| || || || | |||||
Sbjct 3665 GTCAAGAATATCTGCACGGTTGGTAGCTGCAACTACAATAATACCTGTGTTCCCTTCAAA 3606
Query 14155 GCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCGCGTTCATCATTCGCA---GG 14211
|||||||||||| ||||| || || || | |||||||| | |||||||||| ||
Sbjct 3605 GCCATCCATCTCGGTCAAAAGCTGGTTCAGCGTTTGTTCTCTTTCATCATTCCCACCTCC 3546
Query 14212 CATACCACCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCATCGATGAAAACGATACA 14271
|||||| | | || |||| || || || ||||||||||| | || || |||||
Sbjct 3545 AATACCAGTCCCCCT---TTGCCGCCCAACAGCATCAATTTCATCAACAAACACAATACA 3489
Query 14272 TGGTTGATTTTCACGGGCAACTTC--AAAGATATCTCGCACTCTCTTGGCACCGACACCC 14329
|| ||| || ||| |||| |||| ||||| ||||| ||||| |||||
Sbjct 3488 AGGAGCATTCTCCTTGGC--CTTCTTGAAGAGATCTCTAACTCTTGAAGCACCAACACCA 3431
Query 14330 ACAAACATCTCCACAAA 14346
||||||||||| |||||
Sbjct 3430 ACAAACATCTCAACAAA 3414
>seq294625
Length=4757
Score = 102 bits (112), Expect = 1e-16
Identities = 179/257 (70%), Gaps = 9/257 (4%)
Strand=Plus/Plus
Query 130034 CCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTC 130093
|| ||||| || || || | || || |||||| || || ||||| | ||| || |||
Sbjct 4102 CCTTCGTCTCGTGAAATCAACTCGTTGGAGAAGGTCAATCCAGGCATCAAACCGCGTTTC 4161
Query 130094 TTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACACGCGAAC 130153
||||||||||| || || || || || |||||||| ||||| || || || |||||
Sbjct 4162 TTCAACCAGAAGATAGCGCAGAAGCTTCCCGAGAAGAATATCCCTTCGACGCAAGCGAAG 4221
Query 130154 GCAAAGAGACGCTCAGCAAAGGA--GCGGGACTTTGTATCAAACCACTTCATCGCCCACT 130211
|||| || ||| || ||||| || || | | ||| | |||| |||||||||| |
Sbjct 4222 GCAATGATACGTTCCGCAAACGACTCCGAGCC-----ATCGATCCACCTCATCGCCCAAT 4276
Query 130212 GCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAAAGAGTTCCTTCTTTTCTG 130271
||||| |||| || || || | ||||| | || ||| || | |||| || |
Sbjct 4277 TGGCCTTCTTCTGGACGCAAGGAATGGTCTCCACAGCGCGAAACAGCCTCATCTTGTC-G 4335
Query 130272 ATGGA-TCTTTGATGTA 130287
|||| || ||||||||
Sbjct 4336 TTGGAGTCCTTGATGTA 4352
>seq293582
Length=2029
Score = 102 bits (112), Expect = 1e-16
Identities = 368/565 (65%), Gaps = 13/565 (2%)
Strand=Plus/Plus
Query 129728 TAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCATA 129787
|| |||||||||| ||||||||||||||| |||||||| | ||| || ||||||
Sbjct 1012 TACTCCCCAACCCTCTTCTCGAAGAAGTTCGTCTTCCCCTGCAACGAAATCAGCTCCATC 1071
Query 129788 AAATCAAATGGGTTCTTTGAGTTCCAAAT-TGCTGGCACTCCAATCTGTTTGAGGAGACG 129846
||||||| || |||| || | || | | | || |||| | | | ||
Sbjct 1072 CAATCAAACGGATTCTGCACCTTGTACATCTTCCCGTACCCCAA-CGCCACCAACAACCG 1130
Query 129847 ATCCGAGACGTACTCAATGTACTCAGACATCTTCTCGGAGTTCATACCGATGAGGTTACA 129906
||||| ||| |||| || ||| |||| ||| |||||| || | || |||
Sbjct 1131 ATCCGCCACGAACTCGATATACGTGCTCATCAGATCGCCGTTCATCCCCACCAGACCACA 1190
Query 129907 TGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGCACGATGGCGTG 129966
|| |||||||| | | ||| || |||| || ||||| || ||| ||| || |
Sbjct 1191 CGGCAGCGCGTCGCACACAAACTCCCTCTCGATCTCCACCGCGTCCGCCACAATCTTCTT 1250
Query 129967 AATGGTCTCCGTGC-CAGGTCTAT--TGCGCAAAGTCTTGAAGAGTTCCACGGCAAACTC 130023
|| |||| || ||| | || | |||| | || | |||| ||| ||
Sbjct 1251 AACCCGCTCCTCGCTCAGCTTCATGTTCAACAAACCGTAGATCAAG--CACGCGAAA-TC 1307
Query 130024 CTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAG 130083
||| || || ||||| | ||||| | ||| || ||||| || || ||||| ||
Sbjct 1308 GCAGTGCAGGCCTTCGTCCCTCGAGATCAATTCGTTGGAGAACGTTAGGCCCGGCATCAG 1367
Query 130084 ACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCAC 130143
|| |||||||| | |||||| || || || || || ||||||||||| ||||| ||
Sbjct 1368 GCCGCGCTTCTTGAGCCAGAAGATGGCGCAGAAGCTTCCGGAGAAGAAGATGCCCTCGAC 1427
Query 130144 ACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGGGACTTTGTATCAAACCACTTCAT 130203
||| ||||| || | || ||||| || ||||| |||| || | ||| |
Sbjct 1428 ACAGGCGAAGGCGACGATCCGCTCCGCGAAGGACTCGGAC---CCGTCGATCCAGCGGAG 1484
Query 130204 CGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAAAGAGTTCCTT 130263
|||||||| ||||| || ||| || |||| ||||| | || | || || ||
Sbjct 1485 GGCCCACTGGGCCTTCCGCTGGATGCAGGGGATGGTCTCCACGGCGTGGAACAGCCGGTT 1544
Query 130264 CTTTTCTGATGGA-TCTTTGATGTA 130287
||| || | |||| || ||||||||
Sbjct 1545 CTTCTC-GTTGGAGTCCTTGATGTA 1568
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 614849002501360
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |