Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carthamus_20tinctorius_20[genbank_20GCA_5F001633085.1_202016-04-27] 463,906 sequences; 661,937,708 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq275305 125 8e-24 seq293582 109 6e-19 seq180108 93.3 5e-14 seq294625 91.5 2e-13 >seq275305 Length=4240 Score = 125 bits (138), Expect = 8e-24 Identities = 286/418 (68%), Gaps = 12/418 (3%) Strand=Plus/Minus Query 9557 TCAAGGATATCAACGCGATTCGTCGCGGCGATGACAACAATACCTGT-TTCATTATCAAA 9615 ||||| ||||| | || || || || || | |||| ||||||||| ||| | ||||| Sbjct 3664 TCAAGAATATCTGCACGGTTGGTAGCTGCAACTACAATAATACCTGTGTTCCCT-TCAAA 3606 Query 9616 ACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCAT 9675 ||||||||||| |||||||| ||||| | |||||||| | |||||||||| | Sbjct 3605 GCCATCCATCTCGGTCAAAAGCTGGTTCAGCGTTTGTTCTCTTTCATCATTCCCACCTCC 3546 Query 9676 ACCACCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGCATGG 9735 | ||||| | | |||| || || |||||||| ||||||| || || || || || Sbjct 3545 AATACCAGTCCCCCTTTGCCGCCCAACAGCATCAATTTCATCAACAAACACAATACAAGG 3486 Query 9736 TTGATTTTCGCGAGCGACTTC--AAAGAGATCCCGTACACGCTTG--GCGCCCACACCAA 9791 ||| || | | | |||| |||||||| | || || |||| || || ||||||| Sbjct 3485 AGCATTCTC-CTTG-GCCTTCTTGAAGAGATCTC-TA-ACTCTTGAAGCACCAACACCAA 3430 Query 9792 CAAACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCACCC 9850 |||||||||| ||||| | | | ||| || | || || || ||| | |||||| Sbjct 3429 CAAACATCTCAACAAACTCCGAACCCGAA-ATAGAGAAAAACGGAACACCTGCTTCACCA 3371 Query 9851 GCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCT 9910 |||||||| || || || || || || || || || |||| | || || |||| Sbjct 3370 GCAATGGCCTTTGCTAGCAGTGTTTTTCCAGTTCCCGGAGGACCCACAAGAAGAACACCC 3311 Query 9911 CGTGGAATCTTGGCGCCACTTCCAAAGTATCTCTCAGGTTGCTTAAGAAAATCCACAA 9968 |||||| || ||| || | | ||||| || | ||| ||||| || |||| Sbjct 3310 TTCGGAATCCGAGCACCAACAGCAGTGAACCTCTCTGGCTTCTTTAGAAACTCGACAA 3253 >seq293582 Length=2029 Score = 109 bits (120), Expect = 6e-19 Identities = 114/150 (76%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 94795 TCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCC 94854 ||||| || ||||| || |||| || || ||||| ||||| ||||||||||| || | Sbjct 1460 TCCTTCGCGGAGCGGATCGTCGCCTTCGCCTGTGTCGAGGGCATCTTCTTCTCCGGAAGC 1401 Query 94855 TTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAAC 94914 |||||||| || | |||||||||||||| || || ||||| || || ||||||||| Sbjct 1400 TTCTGCGCCATCTTCTGGCTCAAGAAGCGCGGCCTGATGCCGGGCCTAACGTTCTCCAAC 1341 Query 94915 GAGCTTATCTCTCGTGACGAGGGACTCCAC 94944 || | ||||| | ||||| || || ||| Sbjct 1340 GAATTGATCTCGAGGGACGAAGGCCTGCAC 1311 >seq180108 Length=14591 Score = 93.3 bits (102), Expect = 5e-14 Identities = 164/231 (71%), Gaps = 6/231 (3%) Strand=Plus/Minus Query 104138 AGAGACTACGACTTTGGTTATTTTGGTCTCAAAACCCTTGAGAAGAGCT-ATCT-TCAAC 104195 || |||| |||| || |||||||||| | ||||||||||||| || || |||| | | Sbjct 8931 AGGGACTTTGACTATGATTATTTTGGTTTTAAAACCCTTGAGA-GATCTTATCTATTGAA 8873 Query 104196 GGCTCGATGGTGTCTTGATGGAAACCCCACAGTACATGTTCATGCGCGTGGCCATCGGTA 104255 | | | || ||| || ||| || || | ||| | ||| | || || | || | Sbjct 8872 GATCCAAGGGAAAGTTGTTG-AAAGGCCTCAACATATGCTGATGAGGGTTGCAGTTGGGA 8814 Query 104256 TTCATGGGGAAGACATTGATTCTGTCTTGGAGACATACGACAAGATGTCCCA-AGGTATG 104314 ||||| ||| | ||||||||||| | ||| || || |||||| || |||| | Sbjct 8813 TTCATAAGGATAATATTGATTCTGTTATCAGGACTTATCACTTGATGTCACAGAGGTG-G 8755 Query 104315 TTCATTCACGCAACACCAACCCTCTTCAATGCTGGTACACCAAGACCCCAA 104365 |||| ||| || | || ||||||||||||||||| |||||||| |||||| Sbjct 8754 TTCACTCATGCTTCTCCCACCCTCTTCAATGCTGGAACACCAAGGCCCCAA 8704 >seq294625 Length=4757 Score = 91.5 bits (100), Expect = 2e-13 Identities = 146/209 (70%), Gaps = 3/209 (1%) Strand=Plus/Minus Query 94736 TTCCGTGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGATACAAAGTCGCGTT 94795 |||| || | || ||||| || ||||||| |||| |||| | ||| ||| | Sbjct 4300 TTCCTTGCGTCCAGAAGAAGGCCAATTGGGCGATGAGGTGGATCGATGGC---TCGGAGT 4244 Query 94796 CCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCT 94855 | ||||| || || || | || || || || || || || || |||||||| || || Sbjct 4243 CGTTTGCGGAACGTATCATTGCCTTCGCTTGCGTCGAAGGGATATTCTTCTCGGGAAGCT 4184 Query 94856 TCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACG 94915 |||||||||| | ||| | ||||| || ||| | ||||| || | ||||||||||| Sbjct 4183 TCTGCGCTATCTTCTGGTTGAAGAAACGCGGTTTGATGCCTGGATTGACCTTCTCCAACG 4124 Query 94916 AGCTTATCTCTCGTGACGAGGGACTCCAC 94944 || | || || || ||||| ||| | ||| Sbjct 4123 AGTTGATTTCACGAGACGAAGGATTACAC 4095 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 579878572691440