Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carthamus_20tinctorius_20[genbank_20GCA_5F001633085.1_202016-04-27] 463,906 sequences; 661,937,708 total letters Query= NC_028104.1 Length=73689 Score E Sequences producing significant alignments: (Bits) Value seq79434 93.3 2e-14 >seq79434 Length=11937 Score = 93.3 bits (102), Expect = 2e-14 Identities = 159/226 (70%), Gaps = 6/226 (3%) Strand=Plus/Plus Query 65087 CGTGTTCCAAACTGACCATTTGGCATTAATAAATTAATATTGTTTGAACCAATAAAATTC 65146 || || |||||||| ||| |||| | | |||||||||||| || | | | || Sbjct 6384 CGAGTGCCAAACTGCCCACTTGGGTACAGAAGATTAATATTGTTGCTGCCGACATAGTTT 6443 Query 65147 TGAGCCATTCCGATAATTGCTGCATTTAAACTCGCTTCACCGTGATGATATCCTGAATGT 65206 |||||||| || || |||| | | ||| || || |||||||| ||||||| Sbjct 6444 TGAGCCATGCCAATGATTGTAGTTACAAGACTTTGCTCCCCATGATGATAAGCTGAATGC 6503 Query 65207 TCAGAGACATATCCACTAAATTGAGCAACTTTTATTTCCGTTGTTAAAT--TCTTTTTAA 65264 || || ||||| |||||||| ||||||||||||| |||| || |||| ||| || | Sbjct 6504 TCCGACACATACCCACTAAACTGAGCAACTTTTACTTCC--TGGAAAATGGGCTTCTTGA 6561 Query 65265 ATGCAGAATACAATAT-TTTCCGTAAACTAATTTTCAATCCATCCA 65309 | ||| || |||| || |||| | || |||||||||||||| Sbjct 6562 AAGCACAAAACAAAATCTTTCTCTGCCCT-GGTTTCAATCCATCCA 6606 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 234347499600900