Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Carthamus_20tinctorius_20[genbank_20GCA_5F001633085.1_202016-04-27]
463,906 sequences; 661,937,708 total letters
Query= NC_028108.1
Length=171454
Score E
Sequences producing significant alignments: (Bits) Value
seq293582 136 4e-27
seq294625 123 3e-23
>seq293582
Length=2029
Score = 136 bits (150), Expect = 4e-27
Identities = 306/450 (68%), Gaps = 16/450 (4%)
Strand=Plus/Minus
Query 59677 ACGACGAGCAGCATTTCATCAAGATGGTCCTGGCCTTCTTCGCGGCGAGTGATGGAATTG 59736
||| ||||| || ||||||| ||||| |||||||| || || || || || |
Sbjct 1753 ACGGCGAGCGCCACTTCATCACCCACGTCCTCGCCTTCTTTGCCGCCTCGGACGGCATCG 1694
Query 59737 TGATGGAAAATATAGACATGAACTTTTCC--AAGGATGTCCAGATTGCCGAGGCCCGGTC 59794
| |||| ||| | | | | || ||| ||||| |||||| | || ||||| || |
Sbjct 1693 TCCTGGAGAATCTTGCC--GGACGCTTCATGAAGGAGGTCCAGGTCGCGGAGGCGCGCGC 1636
Query 59795 GTTCTACGCGTATCAG-TCGTTCAACGAGTCTATCCACTCCGAGACGTACTCGCTCATGA 59853
||||||| || ||| ||| || |||| |||||||| |||| |||| ||| |
Sbjct 1635 CTTCTACGGGTTCCAGATCGC-CATCGAGAACATCCACTCGGAGATGTACAGCCTCCTCC 1577
Query 59854 TCGATAAGTTGGTCAAGGATCCGGAAGAGAAGGCTGGTCTGTTCCGTGCCATAGAGACG- 59912
| || | ||||||| | | |||||| | ||||||| ||| | |||||
Sbjct 1576 TGGAGTCCTACATCAAGGACTCCAACGAGAAGAACCGGCTGTTCCACGCCGTGGAGACCA 1517
Query 59913 TCCCCCGCAGTTAAACAAAAAGCAGAATGGGCCATGCAGTGGAT----GAGTCCTGGAGC 59968
||||| ||| | | | || || | |||||| | | ||||| | |||| |||
Sbjct 1516 TCCCCTGCA-TCCAGCGGAAGGCCCAGTGGGCCCTCCGCTGGATCGACGGGTCC--GAG- 1461
Query 59969 ATCATTTGCACAACGTCTCATAGCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCTC 60028
|| || || | || || | || || || || || || || ||||||||||| ||
Sbjct 1460 -TCCTTCGCGGAGCGGATCGTCGCCTTCGCCTGTGTCGAGGGCATCTTCTTCTCCGGAAG 1402
Query 60029 GTTCTGTGCTATTTTCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAA 60088
||||| || || ||||||||||| ||||| ||||| ||||||||||| | ||||||||
Sbjct 1401 CTTCTGCGCCATCTTCTGGCTCAAGAAGCGCGGCCTGATGCCGGGCCTAACGTTCTCCAA 1342
Query 60089 CGAGCTGATTTCCCGGGACGAGGGCCTCCA 60118
||| |||| || ||||||| ||||| ||
Sbjct 1341 CGAATTGATCTCGAGGGACGAAGGCCTGCA 1312
>seq294625
Length=4757
Score = 123 bits (136), Expect = 3e-23
Identities = 372/561 (66%), Gaps = 20/561 (4%)
Strand=Plus/Minus
Query 59562 TTTCCTATACGGTACCCGGATCTGTGGGCCCTGTATAAGAAAGCGATCGGTTCATTCTGG 59621
|| ||||| || ||||| | | |||| |||| ||||| || | || ||||||
Sbjct 4652 TTCCCTATTCGCTACCCTCAGATTTGGGAAATGTACAAGAAGGCCGAAGCCTCCTTCTGG 4593
Query 59622 TCCGTCGAGGAGATTGACCTCGCCGGAGACCTGAAGG--ATTGGGACAAGCTCAATTACG 59679
||| ||||||| | || | | |||| || | | |||||| |||| |||
Sbjct 4592 ACCGCCGAGGAGGTCGATTTGTCACAGGACC--AACGCCACTGGGACTCCCTCACCGACG 4535
Query 59680 ACGAGCAGCATTTCATCAAGATGGTCCTGGCCTTCTTCGCGGCGAGTGATGGAATTGTGA 59739
||| | || ||||||| ||||| ||||||||||| || || ||||| ||
Sbjct 4534 GCGAACGACACTTCATCACTCACGTCCTCGCCTTCTTCGCCGCCTCCGACGGAATCGTAT 4475
Query 59740 TGGAAAATATAGACATGAACTTTTCCAAGGATGTCCAGATTGCCGAGGCCCGGTCGTTCT 59799
||||||| ||| | | || || || || || | |||||||| || | ||||
Sbjct 4474 TGGAAAACCTAGCCGGAAGGTTCATGAAAGAGGTTCAAGTCGCCGAGGCTCGTGCTTTCT 4415
Query 59800 ACGCGTATCAG-TCGTTCAA-CGAGTCTATCCACTCCGAGACGTAC---TCGCTCATGAT 59854
||| | ||| ||| ||| |||| || |||||||||| |||| | |||| |
Sbjct 4414 ACGGATTCCAGATCG--CAATCGAGAACATTCACTCCGAGATGTACAGCTTGCTCCT--- 4360
Query 59855 CGATAAGTTGGTCAAGGATCCGGAAGAGAAGGCTGGTCTGTTCCGTGCCATAGAGACG-T 59913
||| | | ||||||| | | || ||| | ||||| || || | ||||| |
Sbjct 4359 CGAGACCTACATCAAGGACTCCAACGACAAGATGAGGCTGTTTCGCGCTGTGGAGACCAT 4300
Query 59914 CCCCCGCAGTTAAACAAAAAGCAGAATGGGCCATGCAGTGGAT-GAGTCCT-GGAGCATC 59971
|| || || | | || || | ||||| ||| |||||| || || |||| ||
Sbjct 4299 TCCTTGC-GTCCAGAAGAAGGCCAATTGGGCGATGAGGTGGATCGATGGCTCGGAG--TC 4243
Query 59972 ATTTGCACAACGTCTCATAGCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCTCGTT 60031
||||| ||||| |||| || || || ||||| ||||| || |||||||| || ||
Sbjct 4242 GTTTGCGGAACGTATCATTGCCTTCGCTTGCGTCGAAGGGATATTCTTCTCGGGAAGCTT 4183
Query 60032 CTGTGCTATTTTCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGA 60091
||| ||||| |||||| | || || || || | ||||| || ||| |||||||||||
Sbjct 4182 CTGCGCTATCTTCTGGTTGAAGAAACGCGGTTTGATGCCTGGATTGACCTTCTCCAACGA 4123
Query 60092 GCTGATTTCCCGGGACGAGGG 60112
| ||||||| || ||||| ||
Sbjct 4122 GTTGATTTCACGAGACGAAGG 4102
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 545344000676640
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |