Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carthamus_20tinctorius_20[genbank_20GCA_5F001633085.1_202016-04-27] 463,906 sequences; 661,937,708 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq293582 136 4e-27 seq294625 123 3e-23 >seq293582 Length=2029 Score = 136 bits (150), Expect = 4e-27 Identities = 306/450 (68%), Gaps = 16/450 (4%) Strand=Plus/Minus Query 59677 ACGACGAGCAGCATTTCATCAAGATGGTCCTGGCCTTCTTCGCGGCGAGTGATGGAATTG 59736 ||| ||||| || ||||||| ||||| |||||||| || || || || || | Sbjct 1753 ACGGCGAGCGCCACTTCATCACCCACGTCCTCGCCTTCTTTGCCGCCTCGGACGGCATCG 1694 Query 59737 TGATGGAAAATATAGACATGAACTTTTCC--AAGGATGTCCAGATTGCCGAGGCCCGGTC 59794 | |||| ||| | | | | || ||| ||||| |||||| | || ||||| || | Sbjct 1693 TCCTGGAGAATCTTGCC--GGACGCTTCATGAAGGAGGTCCAGGTCGCGGAGGCGCGCGC 1636 Query 59795 GTTCTACGCGTATCAG-TCGTTCAACGAGTCTATCCACTCCGAGACGTACTCGCTCATGA 59853 ||||||| || ||| ||| || |||| |||||||| |||| |||| ||| | Sbjct 1635 CTTCTACGGGTTCCAGATCGC-CATCGAGAACATCCACTCGGAGATGTACAGCCTCCTCC 1577 Query 59854 TCGATAAGTTGGTCAAGGATCCGGAAGAGAAGGCTGGTCTGTTCCGTGCCATAGAGACG- 59912 | || | ||||||| | | |||||| | ||||||| ||| | ||||| Sbjct 1576 TGGAGTCCTACATCAAGGACTCCAACGAGAAGAACCGGCTGTTCCACGCCGTGGAGACCA 1517 Query 59913 TCCCCCGCAGTTAAACAAAAAGCAGAATGGGCCATGCAGTGGAT----GAGTCCTGGAGC 59968 ||||| ||| | | | || || | |||||| | | ||||| | |||| ||| Sbjct 1516 TCCCCTGCA-TCCAGCGGAAGGCCCAGTGGGCCCTCCGCTGGATCGACGGGTCC--GAG- 1461 Query 59969 ATCATTTGCACAACGTCTCATAGCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCTC 60028 || || || | || || | || || || || || || || ||||||||||| || Sbjct 1460 -TCCTTCGCGGAGCGGATCGTCGCCTTCGCCTGTGTCGAGGGCATCTTCTTCTCCGGAAG 1402 Query 60029 GTTCTGTGCTATTTTCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAA 60088 ||||| || || ||||||||||| ||||| ||||| ||||||||||| | |||||||| Sbjct 1401 CTTCTGCGCCATCTTCTGGCTCAAGAAGCGCGGCCTGATGCCGGGCCTAACGTTCTCCAA 1342 Query 60089 CGAGCTGATTTCCCGGGACGAGGGCCTCCA 60118 ||| |||| || ||||||| ||||| || Sbjct 1341 CGAATTGATCTCGAGGGACGAAGGCCTGCA 1312 >seq294625 Length=4757 Score = 123 bits (136), Expect = 3e-23 Identities = 372/561 (66%), Gaps = 20/561 (4%) Strand=Plus/Minus Query 59562 TTTCCTATACGGTACCCGGATCTGTGGGCCCTGTATAAGAAAGCGATCGGTTCATTCTGG 59621 || ||||| || ||||| | | |||| |||| ||||| || | || |||||| Sbjct 4652 TTCCCTATTCGCTACCCTCAGATTTGGGAAATGTACAAGAAGGCCGAAGCCTCCTTCTGG 4593 Query 59622 TCCGTCGAGGAGATTGACCTCGCCGGAGACCTGAAGG--ATTGGGACAAGCTCAATTACG 59679 ||| ||||||| | || | | |||| || | | |||||| |||| ||| Sbjct 4592 ACCGCCGAGGAGGTCGATTTGTCACAGGACC--AACGCCACTGGGACTCCCTCACCGACG 4535 Query 59680 ACGAGCAGCATTTCATCAAGATGGTCCTGGCCTTCTTCGCGGCGAGTGATGGAATTGTGA 59739 ||| | || ||||||| ||||| ||||||||||| || || ||||| || Sbjct 4534 GCGAACGACACTTCATCACTCACGTCCTCGCCTTCTTCGCCGCCTCCGACGGAATCGTAT 4475 Query 59740 TGGAAAATATAGACATGAACTTTTCCAAGGATGTCCAGATTGCCGAGGCCCGGTCGTTCT 59799 ||||||| ||| | | || || || || || | |||||||| || | |||| Sbjct 4474 TGGAAAACCTAGCCGGAAGGTTCATGAAAGAGGTTCAAGTCGCCGAGGCTCGTGCTTTCT 4415 Query 59800 ACGCGTATCAG-TCGTTCAA-CGAGTCTATCCACTCCGAGACGTAC---TCGCTCATGAT 59854 ||| | ||| ||| ||| |||| || |||||||||| |||| | |||| | Sbjct 4414 ACGGATTCCAGATCG--CAATCGAGAACATTCACTCCGAGATGTACAGCTTGCTCCT--- 4360 Query 59855 CGATAAGTTGGTCAAGGATCCGGAAGAGAAGGCTGGTCTGTTCCGTGCCATAGAGACG-T 59913 ||| | | ||||||| | | || ||| | ||||| || || | ||||| | Sbjct 4359 CGAGACCTACATCAAGGACTCCAACGACAAGATGAGGCTGTTTCGCGCTGTGGAGACCAT 4300 Query 59914 CCCCCGCAGTTAAACAAAAAGCAGAATGGGCCATGCAGTGGAT-GAGTCCT-GGAGCATC 59971 || || || | | || || | ||||| ||| |||||| || || |||| || Sbjct 4299 TCCTTGC-GTCCAGAAGAAGGCCAATTGGGCGATGAGGTGGATCGATGGCTCGGAG--TC 4243 Query 59972 ATTTGCACAACGTCTCATAGCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCTCGTT 60031 ||||| ||||| |||| || || || ||||| ||||| || |||||||| || || Sbjct 4242 GTTTGCGGAACGTATCATTGCCTTCGCTTGCGTCGAAGGGATATTCTTCTCGGGAAGCTT 4183 Query 60032 CTGTGCTATTTTCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGA 60091 ||| ||||| |||||| | || || || || | ||||| || ||| ||||||||||| Sbjct 4182 CTGCGCTATCTTCTGGTTGAAGAAACGCGGTTTGATGCCTGGATTGACCTTCTCCAACGA 4123 Query 60092 GCTGATTTCCCGGGACGAGGG 60112 | ||||||| || ||||| || Sbjct 4122 GTTGATTTCACGAGACGAAGG 4102 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 545344000676640