Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Carthamus_20tinctorius_20[genbank_20GCA_5F001633085.1_202016-04-27]
463,906 sequences; 661,937,708 total letters
Query= NC_028110.1
Length=171045
Score E
Sequences producing significant alignments: (Bits) Value
seq293582 163 3e-35
seq177381 87.8 2e-12
seq79434 86.0 7e-12
>seq293582
Length=2029
Score = 163 bits (180), Expect = 3e-35
Identities = 311/448 (69%), Gaps = 14/448 (3%)
Strand=Plus/Plus
Query 74768 GCCTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTT 74827
|||||| || || |||||||| || || |||| ||||| ||||| || || |||||
Sbjct 1317 GCCTTCGTCCCTCGAGATCAATTCGTTGGAGAACGTTAGGCCCGGCATCAGGCCGCGCTT 1376
Query 74828 CTTCAACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAA 74887
||| | ||| |||||||| |||||| || |||||||||||| |||||||| || ||
Sbjct 1377 CTTGAGCCAGAAGATGGCGCAGAAGCTTCCGGAGAAGAAGATGCCCTCGACACAGGCGAA 1436
Query 74888 GGCGACAAGGCGTTGCGCGAACGGTGCATCGGA--AGTC-ATCCAAGTCTGAGCCCATTC 74944
|||||| | || | |||||| | ||||| ||| ||||| | ||||| |
Sbjct 1437 GGCGACGATCCGCTCCGCGAA---GGACTCGGACCCGTCGATCCAGCGGAGGGCCCACTG 1493
Query 74945 AGCTTTTCGTTTGACCGCA-GGGACAGTATCGATCGCTTGGAAGAGGCTTGCCTTCTCTT 75003
|| || || | || ||| |||| || || | || ||||| || | |||||| |
Sbjct 1494 GGCCTTCCGCTGGA-TGCAGGGGATGGTCTCCACGGCGTGGAACAGCCGGTTCTTCTCGT 1552
Query 75004 CGGGATCCTTGACGAGCTTGTCAATCATAAGTGAGTACGTCTCCGAATGAATCGACTCGT 75063
|| ||||||| | || | | || |||| ||||||| || || ||||
Sbjct 1553 TGGAGTCCTTGATGTAGGACTCCAGGAGGAGGCTGTACATCTCCGAGTGGATGTTCTCGA 1612
Query 75064 TGAACGA-CTGGTACGCGTAGAAAGACCGCGCCTCTGCAATCTGTACATCCTT--TGAAA 75120
|| ||| |||| || ||||||| | |||||||| || | ||| || ||||| ||||
Sbjct 1613 TG-GCGATCTGGAACCCGTAGAAGGCGCGCGCCTCCGCGACCTGGACCTCCTTCATGAAG 1671
Query 75121 AATTCATGTCGATATTCTCCATGACGATGCCGTCCGAGGCGGCGAAAAAAGCCAGTACCA 75180
| | | | | |||||||| ||||||||||||||||||||| || || || || ||
Sbjct 1672 CGTCC--GGCAAGATTCTCCAGGACGATGCCGTCCGAGGCGGCAAAGAAGGCGAGGACGT 1729
Query 75181 TTTTGATAAAGTGGCGCTCATCGTCAGT 75208
|||| ||||||||||| |||| ||
Sbjct 1730 GGGTGATGAAGTGGCGCTCGCCGTCGGT 1757
>seq177381
Length=5531
Score = 87.8 bits (96), Expect = 2e-12
Identities = 65/75 (87%), Gaps = 1/75 (1%)
Strand=Plus/Plus
Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683
||||||| |||| |||| |||| ||||||||||||||||||||||||||| |||||
Sbjct 4280 TGCTTTCATTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 4339
Query 79684 TGAGCTACGAAAGCA 79698
||||||| |||||||
Sbjct 4340 TGAGCTATGAAAGCA 4354
>seq79434
Length=11937
Score = 86.0 bits (94), Expect = 7e-12
Identities = 107/147 (73%), Gaps = 0/147 (0%)
Strand=Plus/Plus
Query 118090 GTTATAAACCTTACCATGTTGGAGCCCGAGGATCTTTTTAAGGTTGGAAAATTCCTCATT 118149
|| |||||| ||| |||| |||||||| || ||||| |||| ||| || ||| ||||
Sbjct 7444 GTCATAAACTTTAGCATGCTGGAGCCCAAGAATCTTCTTAATGTTCTGAATTTCAGCATT 7503
Query 118150 TTCCGTCACCTGTTTTATGGTGGCGTCCCGAACGTTGCGCGGCTTACCCCGCAGTGGAAA 118209
|| || ||| || | | || |||| ||| || || |||||||| || ||||||
Sbjct 7504 CTCTTGCAACTGCTTCGGGCTCGCTTCCCTAACATTCAGCAACTTACCCCTCAATGGAAA 7563
Query 118210 CACGCCAAACTTGTCACGGCCCACAAC 118236
||||||| | | || ||||||||||
Sbjct 7564 CACGCCATAGTAATCTTGGCCCACAAC 7590
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 544042790178800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |