Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carthamus_20tinctorius_20[genbank_20GCA_5F001633085.1_202016-04-27] 463,906 sequences; 661,937,708 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq293582 163 3e-35 seq177381 87.8 2e-12 seq79434 86.0 7e-12 >seq293582 Length=2029 Score = 163 bits (180), Expect = 3e-35 Identities = 311/448 (69%), Gaps = 14/448 (3%) Strand=Plus/Plus Query 74768 GCCTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTT 74827 |||||| || || |||||||| || || |||| ||||| ||||| || || ||||| Sbjct 1317 GCCTTCGTCCCTCGAGATCAATTCGTTGGAGAACGTTAGGCCCGGCATCAGGCCGCGCTT 1376 Query 74828 CTTCAACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAA 74887 ||| | ||| |||||||| |||||| || |||||||||||| |||||||| || || Sbjct 1377 CTTGAGCCAGAAGATGGCGCAGAAGCTTCCGGAGAAGAAGATGCCCTCGACACAGGCGAA 1436 Query 74888 GGCGACAAGGCGTTGCGCGAACGGTGCATCGGA--AGTC-ATCCAAGTCTGAGCCCATTC 74944 |||||| | || | |||||| | ||||| ||| ||||| | ||||| | Sbjct 1437 GGCGACGATCCGCTCCGCGAA---GGACTCGGACCCGTCGATCCAGCGGAGGGCCCACTG 1493 Query 74945 AGCTTTTCGTTTGACCGCA-GGGACAGTATCGATCGCTTGGAAGAGGCTTGCCTTCTCTT 75003 || || || | || ||| |||| || || | || ||||| || | |||||| | Sbjct 1494 GGCCTTCCGCTGGA-TGCAGGGGATGGTCTCCACGGCGTGGAACAGCCGGTTCTTCTCGT 1552 Query 75004 CGGGATCCTTGACGAGCTTGTCAATCATAAGTGAGTACGTCTCCGAATGAATCGACTCGT 75063 || ||||||| | || | | || |||| ||||||| || || |||| Sbjct 1553 TGGAGTCCTTGATGTAGGACTCCAGGAGGAGGCTGTACATCTCCGAGTGGATGTTCTCGA 1612 Query 75064 TGAACGA-CTGGTACGCGTAGAAAGACCGCGCCTCTGCAATCTGTACATCCTT--TGAAA 75120 || ||| |||| || ||||||| | |||||||| || | ||| || ||||| |||| Sbjct 1613 TG-GCGATCTGGAACCCGTAGAAGGCGCGCGCCTCCGCGACCTGGACCTCCTTCATGAAG 1671 Query 75121 AATTCATGTCGATATTCTCCATGACGATGCCGTCCGAGGCGGCGAAAAAAGCCAGTACCA 75180 | | | | | |||||||| ||||||||||||||||||||| || || || || || Sbjct 1672 CGTCC--GGCAAGATTCTCCAGGACGATGCCGTCCGAGGCGGCAAAGAAGGCGAGGACGT 1729 Query 75181 TTTTGATAAAGTGGCGCTCATCGTCAGT 75208 |||| ||||||||||| |||| || Sbjct 1730 GGGTGATGAAGTGGCGCTCGCCGTCGGT 1757 >seq177381 Length=5531 Score = 87.8 bits (96), Expect = 2e-12 Identities = 65/75 (87%), Gaps = 1/75 (1%) Strand=Plus/Plus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 ||||||| |||| |||| |||| ||||||||||||||||||||||||||| ||||| Sbjct 4280 TGCTTTCATTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 4339 Query 79684 TGAGCTACGAAAGCA 79698 ||||||| ||||||| Sbjct 4340 TGAGCTATGAAAGCA 4354 >seq79434 Length=11937 Score = 86.0 bits (94), Expect = 7e-12 Identities = 107/147 (73%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 118090 GTTATAAACCTTACCATGTTGGAGCCCGAGGATCTTTTTAAGGTTGGAAAATTCCTCATT 118149 || |||||| ||| |||| |||||||| || ||||| |||| ||| || ||| |||| Sbjct 7444 GTCATAAACTTTAGCATGCTGGAGCCCAAGAATCTTCTTAATGTTCTGAATTTCAGCATT 7503 Query 118150 TTCCGTCACCTGTTTTATGGTGGCGTCCCGAACGTTGCGCGGCTTACCCCGCAGTGGAAA 118209 || || ||| || | | || |||| ||| || || |||||||| || |||||| Sbjct 7504 CTCTTGCAACTGCTTCGGGCTCGCTTCCCTAACATTCAGCAACTTACCCCTCAATGGAAA 7563 Query 118210 CACGCCAAACTTGTCACGGCCCACAAC 118236 ||||||| | | || |||||||||| Sbjct 7564 CACGCCATAGTAATCTTGGCCCACAAC 7590 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 544042790178800