Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carthamus_20tinctorius_20[genbank_20GCA_5F001633085.1_202016-04-27] 463,906 sequences; 661,937,708 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq25275 89.7 4e-13 >seq25275 Length=8276 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||||| ||||| ||||| || || |||||| || || | || ||||| ||| | Sbjct 5019 ATGCAAATCTTTGTCAAAACCCTAACAGGGAAAACCATCACGTTGGAAGTCGAGAGCTCG 5078 Query 27850 GACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGCAG 27909 ||| | | | || || ||||| ||||| || ||| |||| || ||| Sbjct 5079 GACACTATCGATAACGTGAAGGCGAAAATCCAAGACAAGGAGGGTATTCCCCCAGACCAG 5138 Query 27910 CAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACAAC 27969 || |||| || |||||||| || || | || |||| |||| ||| ||||||||||| Sbjct 5139 CAGAGGTTGATCTTTGCCGGCAAGCAGCTCGAGGACGGTCGCACTTTGGCCGATTACAAC 5198 Query 27970 ATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 || || || ||| ||| | || |||||| | ||||| | ||||| Sbjct 5199 ATACAGAAGGAGTCCACCCTTCACTTGGTTCTTCGTTTAAGAGGCGG 5245 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 353850405812862