Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Carthamus_20tinctorius_20[genbank_20GCA_5F001633085.1_202016-04-27]
463,906 sequences; 661,937,708 total letters
Query= NC_029996.1
Length=134272
Score E
Sequences producing significant alignments: (Bits) Value
seq25275 100 2e-16
seq259261 87.8 2e-12
>seq25275
Length=8276
Score = 100 bits (110), Expect = 2e-16
Identities = 153/214 (71%), Gaps = 8/214 (4%)
Strand=Plus/Minus
Query 39076 ACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCA 39135
|||||||| || || ||| || || || |||||||| ||||| || | | | || |||
Sbjct 6139 ACCAAATGAAGGGTAGACTCCTTCTGGATGTTATAATCCGCAAGAGTCCTTCCATCCTCA 6080
Query 39136 AGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTC-GGTGGGCACGCTCTCTTTGTCCAT 39194
||||| || || ||||| || || | |||||| || |||||| | | ||| ||||||
Sbjct 6079 AGCTGCTTCCCAGCAAAAATCAGCCTCTGCTGATCCGGTGGGATCCC-CTCCTTGTCCTG 6021
Query 39195 GATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGA---CTCCACGTCCACCGTGATACT 39251
|| ||| ||| | | | | ||| || ||| |||||| |||| |||||| |
Sbjct 6020 AATCTTCGCTTTCACATTGTCGATCGTGTC---CGAACTCTCCACCTCCAGCGTGATGGT 5964
Query 39252 TTTTCCCGTCAGCGTTTTAACAAAGATTTGCATC 39285
|| || |||| ||| ||||||||||| ||||||
Sbjct 5963 CTTCCCTGTCAACGTCTTAACAAAGATCTGCATC 5930
>seq259261
Length=7884
Score = 87.8 bits (96), Expect = 2e-12
Identities = 153/220 (70%), Gaps = 2/220 (1%)
Strand=Plus/Minus
Query 39069 GCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTC 39128
||| | ||||| || || ||| ||| || || || || || ||||| || || | |
Sbjct 2591 GCGGAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCTAGGGTCCTGCC 2532
Query 39129 GTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTT 39188
||| || |||||||| || || || || || ||||||||||| | || | || || ||
Sbjct 2531 GTCCTCGAGCTGTTTCCCGGCGAAGATGAGGCGCTGCTGGTCCGGCGGGATGCCTTCCTT 2472
Query 39189 GTCCATGATTTTCTGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCACGTCCACCGTGA 39247
|||| ||| || || | ||| | | | ||| ||| || || || |||| |||||
Sbjct 2471 GTCCTGGATCTTGGCCTTCA-CGTTGTCGATCGTGTCGGAGGATTCGACCTCCAACGTGA 2413
Query 39248 TACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATCTT 39287
| | || ||||| || ||||| || ||||| ||||| ||
Sbjct 2412 TCGTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCATTTT 2373
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 427117011730178
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |