Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carthamus_20tinctorius_20[genbank_20GCA_5F001633085.1_202016-04-27] 463,906 sequences; 661,937,708 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq25275 100 2e-16 seq259261 87.8 2e-12 >seq25275 Length=8276 Score = 100 bits (110), Expect = 2e-16 Identities = 153/214 (71%), Gaps = 8/214 (4%) Strand=Plus/Minus Query 39076 ACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCA 39135 |||||||| || || ||| || || || |||||||| ||||| || | | | || ||| Sbjct 6139 ACCAAATGAAGGGTAGACTCCTTCTGGATGTTATAATCCGCAAGAGTCCTTCCATCCTCA 6080 Query 39136 AGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTC-GGTGGGCACGCTCTCTTTGTCCAT 39194 ||||| || || ||||| || || | |||||| || |||||| | | ||| |||||| Sbjct 6079 AGCTGCTTCCCAGCAAAAATCAGCCTCTGCTGATCCGGTGGGATCCC-CTCCTTGTCCTG 6021 Query 39195 GATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGA---CTCCACGTCCACCGTGATACT 39251 || ||| ||| | | | | ||| || ||| |||||| |||| |||||| | Sbjct 6020 AATCTTCGCTTTCACATTGTCGATCGTGTC---CGAACTCTCCACCTCCAGCGTGATGGT 5964 Query 39252 TTTTCCCGTCAGCGTTTTAACAAAGATTTGCATC 39285 || || |||| ||| ||||||||||| |||||| Sbjct 5963 CTTCCCTGTCAACGTCTTAACAAAGATCTGCATC 5930 >seq259261 Length=7884 Score = 87.8 bits (96), Expect = 2e-12 Identities = 153/220 (70%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 39069 GCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTC 39128 ||| | ||||| || || ||| ||| || || || || || ||||| || || | | Sbjct 2591 GCGGAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCTAGGGTCCTGCC 2532 Query 39129 GTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTT 39188 ||| || |||||||| || || || || || ||||||||||| | || | || || || Sbjct 2531 GTCCTCGAGCTGTTTCCCGGCGAAGATGAGGCGCTGCTGGTCCGGCGGGATGCCTTCCTT 2472 Query 39189 GTCCATGATTTTCTGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCACGTCCACCGTGA 39247 |||| ||| || || | ||| | | | ||| ||| || || || |||| ||||| Sbjct 2471 GTCCTGGATCTTGGCCTTCA-CGTTGTCGATCGTGTCGGAGGATTCGACCTCCAACGTGA 2413 Query 39248 TACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATCTT 39287 | | || ||||| || ||||| || ||||| ||||| || Sbjct 2412 TCGTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCATTTT 2373 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427117011730178