Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Carthamus_20tinctorius_20[genbank_20GCA_5F001633085.1_202016-04-27]
463,906 sequences; 661,937,708 total letters
Query= NC_029997.1
Length=105667
Score E
Sequences producing significant alignments: (Bits) Value
seq284040 122 6e-23
seq156932 122 6e-23
seq25275 122 6e-23
seq259261 104 2e-17
seq228143 98.7 7e-16
seq145598 86.0 4e-12
>seq284040
Length=2693
Score = 122 bits (134), Expect = 6e-23
Identities = 163/227 (72%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670
|||||||| ||||| || || | || |||||||||||||| | || || || | |
Sbjct 759 ATGCAGATCTTCGTGAAGACGTTGACCGGAAAAACGATCACGTTGGAGGTGGAAAGCTCC 818
Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730
||||| | || | | || || ||| ||||| ||||| | || || || ||
Sbjct 819 GACACGATCGATAACGTGAAGGCGAAGATTCAGGACAAGGAAGGAATCCCACCGGACCAG 878
Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790
|||||||| || || |||||||| || || ||||||| | | ||||| | ||||||||||
Sbjct 879 CAGCGTTTGATCTTCGCCGGCAAGCAGCTCGAAGACGGAAGGACTTTGGCCGATTACAAC 938
Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837
|| || || |||||||| || ||| | ||| | ||||| | |||||
Sbjct 939 ATCCAGAAGGAGTCCACGTTGCATCTGGTTCTGCGGTTGAGGGGAGG 985
Score = 84.2 bits (92), Expect = 1e-11
Identities = 139/198 (70%), Gaps = 2/198 (1%)
Strand=Plus/Plus
Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670
|||||||| ||||| || || | || || || ||||| ||||| || || || | |
Sbjct 987 ATGCAGATATTCGTGAAGACGTTGACCGGGAAGACGATTACTCTGGAGGTGGAGAGCTCC 1046
Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729
|| || | || ||| | || | || | || || ||||| || | || || || ||
Sbjct 1047 GATACGATCGATAATGTCAAGGCCAAGA-TTCAGGATAAAGAGGGGATTCCACCGGACCA 1105
Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789
||| | || ||||||||||| || || |||||||| | || ||| | | ||||||||
Sbjct 1106 GCAGAGGTTGATATTTGCCGGAAAGCAGCTGGAAGATGGCCGGACTCTGGCGGATTACAA 1165
Query 23790 CATACAAAAAGAGTCCAC 23807
||| || || ||||||||
Sbjct 1166 CATCCAGAAGGAGTCCAC 1183
>seq156932
Length=6713
Score = 122 bits (134), Expect = 6e-23
Identities = 163/227 (72%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670
|||||||||||||| ||||||||||| || || ||||||||| | ||||| || | ||
Sbjct 3983 ATGCAGATTTTCGTCAAAACCCTCACTGGGAAGACGATCACTTTGGAAGTCGAGAGCTCG 3924
Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730
|| || | || | | ||| || ||| ||||| ||||| | || ||||| |||
Sbjct 3923 GATACCATCGACAACGTGAAAGCCAAGATTCAAGACAAGGAAGGAATCCCACCAGACCAA 3864
Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790
|| | | || |||||||| ||||| |||||||| | || ||| | | |||||||||
Sbjct 3863 CAAAGACTCATCTTTGCCGGAAAACAGCTGGAAGATGGGCGGACTCTTGCGGATTACAAC 3804
Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837
|| || || || || || | ||| | || | |||||| | |||||
Sbjct 3803 ATCCAGAAGGAATCGACCCTGCATCTTGTGCTGAGGTTGAGGGGAGG 3757
>seq25275
Length=8276
Score = 122 bits (134), Expect = 6e-23
Identities = 153/210 (73%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670
||||| || || || |||||||| || || ||||| ||||| | ||||| || | ||
Sbjct 5019 ATGCAAATCTTTGTCAAAACCCTAACAGGGAAAACCATCACGTTGGAAGTCGAGAGCTCG 5078
Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730
|||||| | || | | || ||||| ||||| || ||| | || ||||| ||
Sbjct 5079 GACACTATCGATAACGTGAAGGCGAAAATCCAAGACAAGGAGGGTATTCCCCCAGACCAG 5138
Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790
||| | || || ||||||||||| || || || |||| |||||||| | ||||||||||
Sbjct 5139 CAGAGGTTGATCTTTGCCGGCAAGCAGCTCGAGGACGGTCGCACTTTGGCCGATTACAAC 5198
Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTT 23820
||||| || |||||||| | || || |||
Sbjct 5199 ATACAGAAGGAGTCCACCCTTCACTTGGTT 5228
Score = 95.1 bits (104), Expect = 8e-15
Identities = 147/210 (70%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670
||||| || || || ||||||||||| || ||||| ||||| || || || || | |
Sbjct 4791 ATGCAAATCTTTGTCAAAACCCTCACCGGCAAAACCATCACGCTGGAGGTCGAAAGCTCT 4850
Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730
||||| |||| | | || |||||| ||||| |||||| | || ||||| ||
Sbjct 4851 GACACCATTGACAACGTGAAGGCTAAAATTCAAGACAAGGAAGGTATTCCCCCAGACCAG 4910
Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790
||| | | || |||||||| || || || || |||| || ||| | | ||| || |||
Sbjct 4911 CAGAGACTGATCTTTGCCGGAAAGCAGCTCGAGGACGGCCGTACTCTTGCCGACTATAAC 4970
Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTT 23820
|| || || ||||| || | || || |||
Sbjct 4971 ATCCAGAAGGAGTCAACCCTTCACTTGGTT 5000
>seq259261
Length=7884
Score = 104 bits (114), Expect = 2e-17
Identities = 143/200 (72%), Gaps = 0/200 (0%)
Strand=Plus/Plus
Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667
||||||||||| ||||| |||||||| ||||| || |||||||| | || || || |||
Sbjct 2373 AAAATGCAGATCTTCGTGAAAACCCTAACGGGGAAGACGATCACGTTGGAGGTCGAATCC 2432
Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727
| ||||| | || | | || || || ||||| ||||| | ||||| ||
Sbjct 2433 TCCGACACGATCGACAACGTGAAGGCCAAGATCCAGGACAAGGAAGGCATCCCGCCGGAC 2492
Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787
|| ||||| | || || ||||| ||||| || || |||| | || ||| ||| |||
Sbjct 2493 CAGCAGCGCCTCATCTTCGCCGGGAAACAGCTCGAGGACGGCAGGACCCTAGCCGACTAC 2552
Query 23788 AACATACAAAAAGAGTCCAC 23807
||||| || || ||||||||
Sbjct 2553 AACATCCAGAAGGAGTCCAC 2572
>seq228143
Length=6931
Score = 98.7 bits (108), Expect = 7e-16
Identities = 142/198 (72%), Gaps = 2/198 (1%)
Strand=Plus/Plus
Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670
||||||||||||||||| ||| | || ||||| || |||||| | || ||||| |
Sbjct 2869 ATGCAGATTTTCGTTAAGACCTTGACCGGAAAGACCATCACTTTGGAGGTTGAGAGTTCA 2928
Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729
||||| |||| ||| | ||| | || || || || ||||| | || ||||| ||
Sbjct 2929 GACACCATTGATAATGTGAAAGC-TAAGATCCAAGATAAGGAAGGCATCCCACCAGACCA 2987
Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789
|||| | || || ||||| || ||||| |||||||| | || || | | || |||||
Sbjct 2988 ACAGAGGTTGATCTTTGCTGGGAAACAGCTGGAAGATGGCCGAACCCTTGCTGACTACAA 3047
Query 23790 CATACAAAAAGAGTCCAC 23807
||| || || ||||| ||
Sbjct 3048 CATCCAGAAGGAGTCGAC 3065
Score = 95.1 bits (104), Expect = 8e-15
Identities = 139/197 (71%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670
||||||||||| || |||||| | || ||||| || ||||| | |||||||| | |
Sbjct 2641 ATGCAGATTTTTGTGAAAACCTTGACCGGAAAGACCATCACATTAGAAGTTGAAAGCTCC 2700
Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730
||||| |||| | | || || || ||||||||||| | || ||||| ||
Sbjct 2701 GACACCATTGACAACGTCAAGGCCAAGATCCAAGACAAAGAAGGCATCCCTCCAGACCAG 2760
Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790
||| | | || || ||||| || || |||||||||| || || | | ||| ||||||
Sbjct 2761 CAGAGACTTATTTTCGCCGGAAAGCAGCTGGAAGACGGCCGAACCCTTGCCGACTACAAC 2820
Query 23791 ATACAAAAAGAGTCCAC 23807
|| || || ||||| ||
Sbjct 2821 ATCCAGAAGGAGTCGAC 2837
Score = 84.2 bits (92), Expect = 1e-11
Identities = 139/198 (70%), Gaps = 2/198 (1%)
Strand=Plus/Plus
Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670
|||||||| |||||||| || | || ||||| ||||||||||| || || || | ||
Sbjct 3325 ATGCAGATATTCGTTAAGACGTTGACTGGAAAGACGATCACTCTGGAGGTGGAAAGCTCG 3384
Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729
|| || |||| ||| | || | ||| || ||||| || || | || || |||||
Sbjct 3385 GATACGATTGATAATGTGAAGGC-AAAGATCCAAGACAAGGAGGGGATCCCACCGGATCA 3443
Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789
||| | || || ||||| || || || ||||||| | | || | | ||||| ||
Sbjct 3444 GCAGAGGTTGATCTTTGCAGGGAAGCAGTTGGAAGATGGGAGGACACTTGCTGATTATAA 3503
Query 23790 CATACAAAAAGAGTCCAC 23807
||| || |||||||| ||
Sbjct 3504 CATTCAGAAAGAGTCTAC 3521
>seq145598
Length=10865
Score = 86.0 bits (94), Expect = 4e-12
Identities = 100/135 (74%), Gaps = 0/135 (0%)
Strand=Plus/Minus
Query 23704 GACAAAGAAGGTGTACCGCCAGATCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAA 23763
|||||||| ||| | || |||||||||||| | || || ||||| ||||| ||| | ||
Sbjct 9643 GACAAAGAGGGTATCCCTCCAGATCAACAGAGGTTGATTTTTGCTGGCAAGCAATTAGAG 9584
Query 23764 GACGAACGCACTTTAGGCGATTACAACATACAAAAAGAGTCCACATTACATTTAGTTTTA 23823
|| | ||| || | | || |||||||| || ||||| || ||| | ||| | ||| ||
Sbjct 9583 GATGGACGAACACTTGCTGACTACAACATCCAGAAAGAATCAACACTCCATCTTGTTCTA 9524
Query 23824 AGGTTGCGAGGAGGA 23838
|| || | ||||||
Sbjct 9523 AGACTGAGGGGAGGA 9509
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 336098542944248
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |