Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carthamus_20tinctorius_20[genbank_20GCA_5F001633085.1_202016-04-27] 463,906 sequences; 661,937,708 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq284040 122 6e-23 seq156932 122 6e-23 seq25275 122 6e-23 seq259261 104 2e-17 seq228143 98.7 7e-16 seq145598 86.0 4e-12 >seq284040 Length=2693 Score = 122 bits (134), Expect = 6e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || || | || |||||||||||||| | || || || | | Sbjct 759 ATGCAGATCTTCGTGAAGACGTTGACCGGAAAAACGATCACGTTGGAGGTGGAAAGCTCC 818 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | || | | || || ||| ||||| ||||| | || || || || Sbjct 819 GACACGATCGATAACGTGAAGGCGAAGATTCAGGACAAGGAAGGAATCCCACCGGACCAG 878 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 |||||||| || || |||||||| || || ||||||| | | ||||| | |||||||||| Sbjct 879 CAGCGTTTGATCTTCGCCGGCAAGCAGCTCGAAGACGGAAGGACTTTGGCCGATTACAAC 938 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 || || || |||||||| || ||| | ||| | ||||| | ||||| Sbjct 939 ATCCAGAAGGAGTCCACGTTGCATCTGGTTCTGCGGTTGAGGGGAGG 985 Score = 84.2 bits (92), Expect = 1e-11 Identities = 139/198 (70%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || || | || || || ||||| ||||| || || || | | Sbjct 987 ATGCAGATATTCGTGAAGACGTTGACCGGGAAGACGATTACTCTGGAGGTGGAGAGCTCC 1046 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || || | || ||| | || | || | || || ||||| || | || || || || Sbjct 1047 GATACGATCGATAATGTCAAGGCCAAGA-TTCAGGATAAAGAGGGGATTCCACCGGACCA 1105 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | || ||||||||||| || || |||||||| | || ||| | | |||||||| Sbjct 1106 GCAGAGGTTGATATTTGCCGGAAAGCAGCTGGAAGATGGCCGGACTCTGGCGGATTACAA 1165 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || || |||||||| Sbjct 1166 CATCCAGAAGGAGTCCAC 1183 >seq156932 Length=6713 Score = 122 bits (134), Expect = 6e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||||||||| ||||||||||| || || ||||||||| | ||||| || | || Sbjct 3983 ATGCAGATTTTCGTCAAAACCCTCACTGGGAAGACGATCACTTTGGAAGTCGAGAGCTCG 3924 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 || || | || | | ||| || ||| ||||| ||||| | || ||||| ||| Sbjct 3923 GATACCATCGACAACGTGAAAGCCAAGATTCAAGACAAGGAAGGAATCCCACCAGACCAA 3864 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 || | | || |||||||| ||||| |||||||| | || ||| | | ||||||||| Sbjct 3863 CAAAGACTCATCTTTGCCGGAAAACAGCTGGAAGATGGGCGGACTCTTGCGGATTACAAC 3804 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 || || || || || || | ||| | || | |||||| | ||||| Sbjct 3803 ATCCAGAAGGAATCGACCCTGCATCTTGTGCTGAGGTTGAGGGGAGG 3757 >seq25275 Length=8276 Score = 122 bits (134), Expect = 6e-23 Identities = 153/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || || || |||||||| || || ||||| ||||| | ||||| || | || Sbjct 5019 ATGCAAATCTTTGTCAAAACCCTAACAGGGAAAACCATCACGTTGGAAGTCGAGAGCTCG 5078 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 |||||| | || | | || ||||| ||||| || ||| | || ||||| || Sbjct 5079 GACACTATCGATAACGTGAAGGCGAAAATCCAAGACAAGGAGGGTATTCCCCCAGACCAG 5138 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||| | || || ||||||||||| || || || |||| |||||||| | |||||||||| Sbjct 5139 CAGAGGTTGATCTTTGCCGGCAAGCAGCTCGAGGACGGTCGCACTTTGGCCGATTACAAC 5198 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTT 23820 ||||| || |||||||| | || || ||| Sbjct 5199 ATACAGAAGGAGTCCACCCTTCACTTGGTT 5228 Score = 95.1 bits (104), Expect = 8e-15 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || || || ||||||||||| || ||||| ||||| || || || || | | Sbjct 4791 ATGCAAATCTTTGTCAAAACCCTCACCGGCAAAACCATCACGCTGGAGGTCGAAAGCTCT 4850 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| |||| | | || |||||| ||||| |||||| | || ||||| || Sbjct 4851 GACACCATTGACAACGTGAAGGCTAAAATTCAAGACAAGGAAGGTATTCCCCCAGACCAG 4910 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||| | | || |||||||| || || || || |||| || ||| | | ||| || ||| Sbjct 4911 CAGAGACTGATCTTTGCCGGAAAGCAGCTCGAGGACGGCCGTACTCTTGCCGACTATAAC 4970 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTT 23820 || || || ||||| || | || || ||| Sbjct 4971 ATCCAGAAGGAGTCAACCCTTCACTTGGTT 5000 >seq259261 Length=7884 Score = 104 bits (114), Expect = 2e-17 Identities = 143/200 (72%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 ||||||||||| ||||| |||||||| ||||| || |||||||| | || || || ||| Sbjct 2373 AAAATGCAGATCTTCGTGAAAACCCTAACGGGGAAGACGATCACGTTGGAGGTCGAATCC 2432 Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727 | ||||| | || | | || || || ||||| ||||| | ||||| || Sbjct 2433 TCCGACACGATCGACAACGTGAAGGCCAAGATCCAGGACAAGGAAGGCATCCCGCCGGAC 2492 Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787 || ||||| | || || ||||| ||||| || || |||| | || ||| ||| ||| Sbjct 2493 CAGCAGCGCCTCATCTTCGCCGGGAAACAGCTCGAGGACGGCAGGACCCTAGCCGACTAC 2552 Query 23788 AACATACAAAAAGAGTCCAC 23807 ||||| || || |||||||| Sbjct 2553 AACATCCAGAAGGAGTCCAC 2572 >seq228143 Length=6931 Score = 98.7 bits (108), Expect = 7e-16 Identities = 142/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||||||||||||||| ||| | || ||||| || |||||| | || ||||| | Sbjct 2869 ATGCAGATTTTCGTTAAGACCTTGACCGGAAAGACCATCACTTTGGAGGTTGAGAGTTCA 2928 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| |||| ||| | ||| | || || || || ||||| | || ||||| || Sbjct 2929 GACACCATTGATAATGTGAAAGC-TAAGATCCAAGATAAGGAAGGCATCCCACCAGACCA 2987 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||| | || || ||||| || ||||| |||||||| | || || | | || ||||| Sbjct 2988 ACAGAGGTTGATCTTTGCTGGGAAACAGCTGGAAGATGGCCGAACCCTTGCTGACTACAA 3047 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || || ||||| || Sbjct 3048 CATCCAGAAGGAGTCGAC 3065 Score = 95.1 bits (104), Expect = 8e-15 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||||||||| || |||||| | || ||||| || ||||| | |||||||| | | Sbjct 2641 ATGCAGATTTTTGTGAAAACCTTGACCGGAAAGACCATCACATTAGAAGTTGAAAGCTCC 2700 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| |||| | | || || || ||||||||||| | || ||||| || Sbjct 2701 GACACCATTGACAACGTCAAGGCCAAGATCCAAGACAAAGAAGGCATCCCTCCAGACCAG 2760 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||| | | || || ||||| || || |||||||||| || || | | ||| |||||| Sbjct 2761 CAGAGACTTATTTTCGCCGGAAAGCAGCTGGAAGACGGCCGAACCCTTGCCGACTACAAC 2820 Query 23791 ATACAAAAAGAGTCCAC 23807 || || || ||||| || Sbjct 2821 ATCCAGAAGGAGTCGAC 2837 Score = 84.2 bits (92), Expect = 1e-11 Identities = 139/198 (70%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| |||||||| || | || ||||| ||||||||||| || || || | || Sbjct 3325 ATGCAGATATTCGTTAAGACGTTGACTGGAAAGACGATCACTCTGGAGGTGGAAAGCTCG 3384 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || || |||| ||| | || | ||| || ||||| || || | || || ||||| Sbjct 3385 GATACGATTGATAATGTGAAGGC-AAAGATCCAAGACAAGGAGGGGATCCCACCGGATCA 3443 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | || || ||||| || || || ||||||| | | || | | ||||| || Sbjct 3444 GCAGAGGTTGATCTTTGCAGGGAAGCAGTTGGAAGATGGGAGGACACTTGCTGATTATAA 3503 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || |||||||| || Sbjct 3504 CATTCAGAAAGAGTCTAC 3521 >seq145598 Length=10865 Score = 86.0 bits (94), Expect = 4e-12 Identities = 100/135 (74%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 23704 GACAAAGAAGGTGTACCGCCAGATCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAA 23763 |||||||| ||| | || |||||||||||| | || || ||||| ||||| ||| | || Sbjct 9643 GACAAAGAGGGTATCCCTCCAGATCAACAGAGGTTGATTTTTGCTGGCAAGCAATTAGAG 9584 Query 23764 GACGAACGCACTTTAGGCGATTACAACATACAAAAAGAGTCCACATTACATTTAGTTTTA 23823 || | ||| || | | || |||||||| || ||||| || ||| | ||| | ||| || Sbjct 9583 GATGGACGAACACTTGCTGACTACAACATCCAGAAAGAATCAACACTCCATCTTGTTCTA 9524 Query 23824 AGGTTGCGAGGAGGA 23838 || || | |||||| Sbjct 9523 AGACTGAGGGGAGGA 9509 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 336098542944248