Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carthamus_20tinctorius_20[genbank_20GCA_5F001633085.1_202016-04-27] 463,906 sequences; 661,937,708 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq180108 105 9e-18 seq161111 100 4e-16 seq288533 87.8 2e-12 >seq180108 Length=14591 Score = 105 bits (116), Expect = 9e-18 Identities = 106/138 (77%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 78158 ACCTCCCTGATCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 78217 |||||| || || | ||| | ||| || | ||| | || | ||||||||||||||| || Sbjct 8327 ACCTCCTTGGTCAACATAACGGGCAGTATCATTGAAGACACGCAACATTGGAATAATGCC 8386 Query 78218 GTTAGATGTTCCATTTGTTCCAGAAATATAACTTCCACTTGCGCGAATATTACTAATGGA 78277 || ||||| |||||||||||| || ||||||||| |||| ||||||||| || || Sbjct 8387 ATTGGATGTACCATTTGTTCCACGTATGTAACTTCCAGTTGCACGAATATTATGAACAGA 8446 Query 78278 TATCCCTATTCCTCCTGC 78295 | || ||||||||||| Sbjct 8447 GACACCAATTCCTCCTGC 8464 Score = 96.9 bits (106), Expect = 5e-15 Identities = 113/153 (74%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 77897 CTCTCTTTCATATTGAGTATATAGCCGTTCAAATTCATCTCCCCAAACATCATCCAATCC 77956 || |||||||||||| ||||| || || ||||| || || |||||| |||| |||| || Sbjct 7805 CTGTCTTTCATATTGGGTATAGAGGCGCTCAAACTCTTCACCCCAACAATCACCCAAACC 7864 Query 77957 AGGGCATTCATTTGGGCACATCAATGACCAGTCACCATCTTCCTTAACTCGTTTCATAAA 78016 || |||||||||||| | || ||||| |||| || |||| | |||||| Sbjct 7865 CGGAGCTTCATTTGGGCAAAATAAAGACCAAGTGCCATTACTCTGGACTCTCTCCATAAA 7924 Query 78017 GAGATCAGGTATCCATAGAGCAATAAATAGATC 78049 ||||||||| | ||| |||||| ||| | ||| Sbjct 7925 GAGATCAGGCACCCAAAGAGCATAAAACAAATC 7957 >seq161111 Length=12134 Score = 100 bits (110), Expect = 4e-16 Identities = 156/223 (70%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 78158 ACCTCCCTGATCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 78217 |||||| || || | ||| | || || | ||| | || | ||||||||||||||| || Sbjct 5272 ACCTCCTTGGTCAACATAACGAGCTGTATCATTGAAGACACGCAACATTGGAATAATGCC 5213 Query 78218 GTTAGATGTTCCATTTGTTCCAGAAATATAACTTCCACTTGCGCGAATATTACTAATGGA 78277 || ||||| |||||||||||| || ||||||||| ||| || |||||| || || Sbjct 5212 ATTGGATGTGCCATTTGTTCCACGTATGTAACTTCCAGTTGAACGGATATTATGAACAGA 5153 Query 78278 TATCCCTATTCCTCCTGCCATCTTAGATATTAGAGCGCAACGTTTCAATGTATCGTAGAT 78337 | || ||||||||||| || || | ||| || ||||| || || || || Sbjct 5152 GACACCAATTCCTCCTGCTGATTTGCTGATAACAGCACATTCCTTCAAAGTGTCATATAT 5093 Query 78338 ACCCTCTATACTGTCATCCATCATGTTAAGAAGAAAACAGCTA 78380 || || || || ||||| ||||| | ||||| |||||| Sbjct 5092 GCCTTCAATGCTATCATCTTTCATGCATATCAGAAAGCAGCTA 5050 >seq288533 Length=1307 Score = 87.8 bits (96), Expect = 2e-12 Identities = 102/138 (74%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 78158 ACCTCCCTGATCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 78217 |||||| || || | ||| | || || | ||| | || | ||||||||||||||| || Sbjct 759 ACCTCCTTGGTCAACATAACGGGAAGTATCATTGAAGACACGCAACATTGGAATAATGCC 700 Query 78218 GTTAGATGTTCCATTTGTTCCAGAAATATAACTTCCACTTGCGCGAATATTACTAATGGA 78277 || ||||| |||||||||||| | || |||||||| ||| | |||||| || || Sbjct 699 ATTGGATGTACCATTTGTTCCACATATGTAACTTCCTGTTGAATGGATATTATGAACAGA 640 Query 78278 TATCCCTATTCCTCCTGC 78295 | || ||||||||||| Sbjct 639 GACACCAATTCCTCCTGC 622 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 690640537195840