Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Carthamus_20tinctorius_20[genbank_20GCA_5F001633085.1_202016-04-27]
463,906 sequences; 661,937,708 total letters
Query= NC_031033.1
Length=217124
Score E
Sequences producing significant alignments: (Bits) Value
seq180108 105 9e-18
seq161111 100 4e-16
seq288533 87.8 2e-12
>seq180108
Length=14591
Score = 105 bits (116), Expect = 9e-18
Identities = 106/138 (77%), Gaps = 0/138 (0%)
Strand=Plus/Plus
Query 78158 ACCTCCCTGATCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 78217
|||||| || || | ||| | ||| || | ||| | || | ||||||||||||||| ||
Sbjct 8327 ACCTCCTTGGTCAACATAACGGGCAGTATCATTGAAGACACGCAACATTGGAATAATGCC 8386
Query 78218 GTTAGATGTTCCATTTGTTCCAGAAATATAACTTCCACTTGCGCGAATATTACTAATGGA 78277
|| ||||| |||||||||||| || ||||||||| |||| ||||||||| || ||
Sbjct 8387 ATTGGATGTACCATTTGTTCCACGTATGTAACTTCCAGTTGCACGAATATTATGAACAGA 8446
Query 78278 TATCCCTATTCCTCCTGC 78295
| || |||||||||||
Sbjct 8447 GACACCAATTCCTCCTGC 8464
Score = 96.9 bits (106), Expect = 5e-15
Identities = 113/153 (74%), Gaps = 0/153 (0%)
Strand=Plus/Plus
Query 77897 CTCTCTTTCATATTGAGTATATAGCCGTTCAAATTCATCTCCCCAAACATCATCCAATCC 77956
|| |||||||||||| ||||| || || ||||| || || |||||| |||| |||| ||
Sbjct 7805 CTGTCTTTCATATTGGGTATAGAGGCGCTCAAACTCTTCACCCCAACAATCACCCAAACC 7864
Query 77957 AGGGCATTCATTTGGGCACATCAATGACCAGTCACCATCTTCCTTAACTCGTTTCATAAA 78016
|| |||||||||||| | || ||||| |||| || |||| | ||||||
Sbjct 7865 CGGAGCTTCATTTGGGCAAAATAAAGACCAAGTGCCATTACTCTGGACTCTCTCCATAAA 7924
Query 78017 GAGATCAGGTATCCATAGAGCAATAAATAGATC 78049
||||||||| | ||| |||||| ||| | |||
Sbjct 7925 GAGATCAGGCACCCAAAGAGCATAAAACAAATC 7957
>seq161111
Length=12134
Score = 100 bits (110), Expect = 4e-16
Identities = 156/223 (70%), Gaps = 0/223 (0%)
Strand=Plus/Minus
Query 78158 ACCTCCCTGATCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 78217
|||||| || || | ||| | || || | ||| | || | ||||||||||||||| ||
Sbjct 5272 ACCTCCTTGGTCAACATAACGAGCTGTATCATTGAAGACACGCAACATTGGAATAATGCC 5213
Query 78218 GTTAGATGTTCCATTTGTTCCAGAAATATAACTTCCACTTGCGCGAATATTACTAATGGA 78277
|| ||||| |||||||||||| || ||||||||| ||| || |||||| || ||
Sbjct 5212 ATTGGATGTGCCATTTGTTCCACGTATGTAACTTCCAGTTGAACGGATATTATGAACAGA 5153
Query 78278 TATCCCTATTCCTCCTGCCATCTTAGATATTAGAGCGCAACGTTTCAATGTATCGTAGAT 78337
| || ||||||||||| || || | ||| || ||||| || || || ||
Sbjct 5152 GACACCAATTCCTCCTGCTGATTTGCTGATAACAGCACATTCCTTCAAAGTGTCATATAT 5093
Query 78338 ACCCTCTATACTGTCATCCATCATGTTAAGAAGAAAACAGCTA 78380
|| || || || ||||| ||||| | ||||| ||||||
Sbjct 5092 GCCTTCAATGCTATCATCTTTCATGCATATCAGAAAGCAGCTA 5050
>seq288533
Length=1307
Score = 87.8 bits (96), Expect = 2e-12
Identities = 102/138 (74%), Gaps = 0/138 (0%)
Strand=Plus/Minus
Query 78158 ACCTCCCTGATCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 78217
|||||| || || | ||| | || || | ||| | || | ||||||||||||||| ||
Sbjct 759 ACCTCCTTGGTCAACATAACGGGAAGTATCATTGAAGACACGCAACATTGGAATAATGCC 700
Query 78218 GTTAGATGTTCCATTTGTTCCAGAAATATAACTTCCACTTGCGCGAATATTACTAATGGA 78277
|| ||||| |||||||||||| | || |||||||| ||| | |||||| || ||
Sbjct 699 ATTGGATGTACCATTTGTTCCACATATGTAACTTCCTGTTGAATGGATATTATGAACAGA 640
Query 78278 TATCCCTATTCCTCCTGC 78295
| || |||||||||||
Sbjct 639 GACACCAATTCCTCCTGC 622
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 690640537195840
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |