Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carthamus_20tinctorius_20[genbank_20GCA_5F001633085.1_202016-04-27] 463,906 sequences; 661,937,708 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq180108 149 9e-31 seq161111 141 1e-28 seq288533 107 3e-18 >seq180108 Length=14591 Score = 149 bits (164), Expect = 9e-31 Identities = 167/223 (75%), Gaps = 3/223 (1%) Strand=Plus/Plus Query 76753 ACCTCCCTGATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCC 76812 |||||| || || | ||| | |||||| | ||| | || | |||||||||||||||||| Sbjct 8327 ACCTCCTTGGTCAACATAACGGGCAGTATCATTGAAGACACGCAACATTGGAATAATGCC 8386 Query 76813 GTTAGATGTACCATTTGTTCCAGAAATATAACTTCCACATGCACGAATATTACTAATAGA 76872 || |||||||||||||||||| || ||||||||| ||||||||||||| || ||| Sbjct 8387 ATTGGATGTACCATTTGTTCCACGTATGTAACTTCCAGTTGCACGAATATTATGAACAGA 8446 Query 76873 TAGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAGAT 76932 | || ||||||||||| ||| ||| | |||||| || || |||||||| || Sbjct 8447 GACACCAATTCCTCCTGC---TTTGCTGATAACAGCACATTCCTTGAAAGTGTCATATAT 8503 Query 76933 GCCCTCTATACTATCATCCATCATGTTAAGAAGAAAACAGCTA 76975 ||| || || |||||| | ||||| | || || |||||| Sbjct 8504 GCCTTCAATGCTATCACCTTTCATGCATATCAGGAAGCAGCTA 8546 Score = 87.8 bits (96), Expect = 3e-12 Identities = 111/153 (73%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 76492 CTCTCTTTCATATTGTGTATATAACCGTTCAAATTCATCTCCCCAAACATCATCCAAACC 76551 || |||||||||||| ||||| | || ||||| || || |||||| |||| ||||||| Sbjct 7805 CTGTCTTTCATATTGGGTATAGAGGCGCTCAAACTCTTCACCCCAACAATCACCCAAACC 7864 Query 76552 AGGACATTCATTCGGACACATCAATGACCACTCACCATCTTCCTTAACCCGTTTCATAAA 76611 ||| |||||| || || | || ||||| |||| || || | | |||||| Sbjct 7865 CGGAGCTTCATTTGGGCAAAATAAAGACCAAGTGCCATTACTCTGGACTCTCTCCATAAA 7924 Query 76612 GAGATCAGGTATCCATAGAGCAATAAATAGATC 76644 ||||||||| | ||| |||||| ||| | ||| Sbjct 7925 GAGATCAGGCACCCAAAGAGCATAAAACAAATC 7957 >seq161111 Length=12134 Score = 141 bits (156), Expect = 1e-28 Identities = 165/223 (74%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 76753 ACCTCCCTGATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCC 76812 |||||| || || | ||| | || || | ||| | || | |||||||||||||||||| Sbjct 5272 ACCTCCTTGGTCAACATAACGAGCTGTATCATTGAAGACACGCAACATTGGAATAATGCC 5213 Query 76813 GTTAGATGTACCATTTGTTCCAGAAATATAACTTCCACATGCACGAATATTACTAATAGA 76872 || ||||| |||||||||||| || ||||||||| || ||| |||||| || ||| Sbjct 5212 ATTGGATGTGCCATTTGTTCCACGTATGTAACTTCCAGTTGAACGGATATTATGAACAGA 5153 Query 76873 TAGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAGAT 76932 | || ||||||||||| ||| ||| | |||||| ||||| |||||||| || Sbjct 5152 GACACCAATTCCTCCTGCTGATTTGCTGATAACAGCACATTCCTTCAAAGTGTCATATAT 5093 Query 76933 GCCCTCTATACTATCATCCATCATGTTAAGAAGAAAACAGCTA 76975 ||| || || |||||||| ||||| | ||||| |||||| Sbjct 5092 GCCTTCAATGCTATCATCTTTCATGCATATCAGAAAGCAGCTA 5050 Score = 87.8 bits (96), Expect = 3e-12 Identities = 113/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 76492 CTCTCTTTCATATTGTGTATATAACCGTTCAAATTCATCTCCCCAAACATCATCCAAACC 76551 || |||||||||||| ||||| | |||||||| | |||||| |||| ||||||| Sbjct 5767 CTGTCTTTCATATTGGGTATAAAGGTTCTCAAATTCTTTACCCCAACAATCACCCAAACC 5708 Query 76552 AGGACATTCATTCGGACACATCAATGACCACTCACCATCTTCCTTAACCCGTTTCATAAA 76611 ||| ||||| ||||| | || ||||| |||| || |||| | |||||| Sbjct 5707 TGGAGCCTCATTTGGACAAAATAAAGACCAAGTGCCATTACTCTGGACCCTCTCCATAAA 5648 Query 76612 GAGATCAGGTATCCATAGAGCAATAAATAGATCTCG 76647 ||||||||||| ||| |||||| ||| | ||| || Sbjct 5647 GAGATCAGGTACCCAAAGAGCATAAAACAAATCCCG 5612 >seq288533 Length=1307 Score = 107 bits (118), Expect = 3e-18 Identities = 119/159 (75%), Gaps = 0/159 (0%) Strand=Plus/Minus Query 76753 ACCTCCCTGATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCC 76812 |||||| || || | ||| | || ||| | ||| | || | |||||||||||||||||| Sbjct 759 ACCTCCTTGGTCAACATAACGGGAAGTATCATTGAAGACACGCAACATTGGAATAATGCC 700 Query 76813 GTTAGATGTACCATTTGTTCCAGAAATATAACTTCCACATGCACGAATATTACTAATAGA 76872 || |||||||||||||||||| | || |||||||| || | | |||||| || ||| Sbjct 699 ATTGGATGTACCATTTGTTCCACATATGTAACTTCCTGTTGAATGGATATTATGAACAGA 640 Query 76873 TAGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCACA 76911 | || ||||||||||| ||| ||| | |||||| Sbjct 639 GACACCAATTCCTCCTGCTGATTTGCTGATAACAGCACA 601 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 708800218177920