Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carthamus_20tinctorius_20[genbank_20GCA_5F001633085.1_202016-04-27] 463,906 sequences; 661,937,708 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq284040 132 4e-26 seq62239 129 5e-25 seq25275 109 5e-19 seq304067 104 2e-17 seq228143 93.3 4e-14 seq156932 82.4 7e-11 >seq284040 Length=2693 Score = 132 bits (146), Expect = 4e-26 Identities = 157/210 (75%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 41654 ACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCG 41713 |||||||||| |||| ||||||||| ||||| || |||| | || | |||| ||| Sbjct 967 ACCAGATGCAACGTGGACTCCTTCTGGATGTTGTAATCGGCCAAAGTCCTTCCGTCTTCG 908 Query 41714 AGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATG 41773 ||||||||||||||||| |||| ||||| ||||||| || | | ||||||||| || Sbjct 907 AGCTGCTTGCCGGCGAAGATCAAACGCTGCTGGTCCGGTGGGATTCCTTCCTTGTCC-TG 849 Query 41774 ATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTT 41832 | | || || | ||| | | |||||| |||||||||| ||| |||||||| Sbjct 848 AATCTTCGCCTTCACGTTATCGATCGTGTCGGAGCTTTCCACCTCCAACGTGATCGTTTT 789 Query 41833 ACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || |||| |||||| ||||| |||||||| Sbjct 788 TCCGGTCAACGTCTTCACGAAGATCTGCAT 759 >seq62239 Length=9780 Score = 129 bits (142), Expect = 5e-25 Identities = 170/234 (73%), Gaps = 4/234 (2%) Strand=Plus/Plus Query 41634 CGCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGG 41693 |||||||||| || || | || || || || ||| ||||||||| ||||| ||||||| Sbjct 5329 CGCCGCCGCGGAGGCGGAGGACGAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGG 5388 Query 41694 AGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGG 41753 ||||| | |||| ||||||||||| |||||||| || ||||| || ||||||| | Sbjct 5389 CTAGGGTCCTGCCGTCCTCGAGCTGCTTCCCGGCGAAGATGAGGCGTTGCTGGTCCGGCG 5448 Query 41754 GAACGCTCTCCTTGTCCATGATTTTTTGCTT--CAACGACGACACAGTGTCGCTCGACTC 41811 | | || |||||||| ||| || ||| || | || | |||||| || || Sbjct 5449 GGATGCCTTCCTTGTCTTGGATCTTGGCCTTGACATTGTCG--ATGGTGTCGGAGGATTC 5506 Query 41812 CACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865 ||||| | ||||| ||||| || || || || || ||||| |||||||| || Sbjct 5507 GACCTCTAGGGTTATGGTTTTCCCGGTTAGGGTTTTCACGAAGATCTGCATCTT 5560 >seq25275 Length=8276 Score = 109 bits (120), Expect = 5e-19 Identities = 165/231 (71%), Gaps = 8/231 (3%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 ||||| | || ||| | |||| || || || ||||||||| ||||||||||||| Sbjct 5017 CCGCCTCTTAAACGAAGAACCAAGTGAAGGGTTGACTCCTTCTGGATGTTATAGTCGGCA 4958 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || || || |||| ||||||||||| ||||| || ||||| | ||| ||||| | |||| Sbjct 4957 AGAGTACGGCCGTCCTCGAGCTGCTTTCCGGCAAAGATCAGTCTCTGCTGGTCTGGGGGA 4898 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTC---GCTCGACTC 41811 | | ||||||| | ||| |||| || | ||| | | | ||||| ||| || Sbjct 4897 ATACCTTCCTTGT-CTTGAATTTTAGCCTTCACGTTGTCAATGGTGTCAGAGCT---TTC 4842 Query 41812 CACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||||||| ||| || ||||| || || || || || || || || ||||| Sbjct 4841 GACCTCCAGCGTGATGGTTTTGCCGGTGAGGGTTTTGACAAAGATTTGCAT 4791 Score = 109 bits (120), Expect = 5e-19 Identities = 165/231 (71%), Gaps = 8/231 (3%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 ||||| | || ||| | |||| || || ||| ||||||||| ||||| || |||| Sbjct 5245 CCGCCTCTTAAACGAAGAACCAAGTGAAGGGTGGACTCCTTCTGTATGTTGTAATCGGCC 5186 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 | ||||| |||| ||||||||||||||||| || |||| | ||| ||||| | |||| Sbjct 5185 AAAGTGCGACCGTCCTCGAGCTGCTTGCCGGCAAAGATCAACCTCTGCTGGTCTGGGGGA 5126 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTC---GCTCGACTC 41811 | | ||||||||| |||||| |||| ||| | | |||||| ||| ||| Sbjct 5125 ATACCCTCCTTGTCTTGGATTTTCGCCTTC-ACGTTATCGATAGTGTCCGAGCT---CTC 5070 Query 41812 CACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || |||| ||| || ||||| || || || || || || || || ||||| Sbjct 5069 GACTTCCAACGTGATGGTTTTCCCTGTTAGGGTTTTGACAAAGATTTGCAT 5019 Score = 104 bits (114), Expect = 2e-17 Identities = 164/231 (71%), Gaps = 8/231 (3%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || ||||| ||||| | |||| ||| || || ||||||||| |||||||| || | Sbjct 6157 CCACCGCGAAGACGAAGAACCAAATGAAGGGTAGACTCCTTCTGGATGTTATAATCCGCA 6098 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || || | | || || |||||||| || || || ||||| | ||| || |||| || Sbjct 6097 AGAGTCCTTCCATCCTCAAGCTGCTTCCCAGCAAAAATCAGCCTCTGCTGATCCGGTGGG 6038 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGA---CTC 41811 | | |||||||||| ||| | || |||| || | | | ||||| ||| ||| Sbjct 6037 ATCCCCTCCTTGTCC-TGAATCTTCGCTTTCACATTGTCGATCGTGTC---CGAACTCTC 5982 Query 41812 CACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 |||||||| ||| || || || || |||| |||||| || || |||||||| Sbjct 5981 CACCTCCAGCGTGATGGTCTTCCCTGTCAACGTCTTAACAAAGATCTGCAT 5931 Score = 102 bits (112), Expect = 7e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||||| || || || || ||| ||||||||| || || ||||||| Sbjct 4789 CCTCCACGGAGACGTAGGACGAGGTGGAGTGTGGACTCCTTCTGGATATTGTAGTCGGCC 4730 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 | || || |||| ||||||||||||||||| || ||||| | || || || | |||| Sbjct 4729 AAAGTTCGGCCGTCCTCGAGCTGCTTGCCGGCAAAGATCAGCCTTTGCTGATCTGGGGGA 4670 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | | ||||||||| || |||| || | ||| | | | || ||| ||| || Sbjct 4669 ATCCCTTCCTTGTCC-TGGATTTTGGCCTTGACGTTGTCGATTGTATCGGAACTCTCGAC 4611 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||| | || || || || || || || ||||| ||||| |||||||| Sbjct 4610 CTCTAGGGTGATGGTCTTTCCAGTTAGTGTCTTAACGAAGATCTGCAT 4563 Score = 87.8 bits (96), Expect = 2e-12 Identities = 147/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 41654 ACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCG 41713 |||| |||||| || |||||||| || |||||||||| || || || | || || Sbjct 5911 ACCAAATGCAGAGTCGATTCCTTCTGGATATTATAGTCGGCAAGCGTACGGCCATCCTCA 5852 Query 41714 AGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATG 41773 ||||||||||| || || ||||| | ||| ||||| | || | | |||||| ||| || Sbjct 5851 AGCTGCTTGCCTGCAAAGATCAGCCTCTGCTGGTCTGGTGGGATACCCTCCTTATCC-TG 5793 Query 41774 ATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTT 41832 | || |||| |||| | | | |||||| ||| || |||| || || || || Sbjct 5792 GATCTTCGCTTTAACGTTGTCAATGGTGTCGGAACTCTCGACTTCCAATGTGATAGTCTT 5733 Query 41833 ACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || || | ||||| || || |||||||| Sbjct 5732 CCCGGTTAAGGTCTTCACAAAGATCTGCAT 5703 Score = 82.4 bits (90), Expect = 7e-11 Identities = 135/192 (70%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 41672 TCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 41731 |||||||||||||| ||||| | ||||| || | || || |||||||||||||| || Sbjct 5437 TCCTTCTGAATGTTGTAGTCTGCAAGGGTACGGCCATCCTCAAGCTGCTTGCCGGCAAAG 5378 Query 41732 ATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGAC 41791 |||| | |||||||| | || | | ||| || || |||||| |||| ||| Sbjct 5377 ATCAATCTTTGTTGGTCTGGTGGGATTCCCTCTTTATCTTGGATTTTCGCCTTC-ACGTT 5319 Query 41792 GAC-ACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTAC 41850 | | | |||||| ||| || |||| || || || || || |||| ||||| || Sbjct 5318 GTCGATGGTGTCGGAGCTCTCAACTTCCAGTGTGATGGTCTTTCCGGTCAAAGTCTTCAC 5259 Query 41851 GAAAATCTGCAT 41862 || |||||||| Sbjct 5258 AAAGATCTGCAT 5247 >seq304067 Length=4417 Score = 104 bits (114), Expect = 2e-17 Identities = 93/117 (79%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 41634 CGCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGG 41693 |||||||||| || || | || || || ||||| ||||||||| ||||| ||||||| Sbjct 117 CGCCGCCGCGGAGGCGGAGGACGAGGTGGAGCGTCGACTCCTTCTGGATGTTGTAGTCGG 58 Query 41694 AGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCG 41750 ||||| | |||| ||||||||||| |||||||| || |||||||| ||||||| Sbjct 57 CTAGGGTTCTGCCGTCCTCGAGCTGCTTCCCGGCGAAGATGAGGCGCTGCTGGTCCG 1 >seq228143 Length=6931 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || |||||||| | |||| ||| || ||| |||||||| ||||| ||||||| Sbjct 2411 CCACCACGTAGACGGAGGACCAAATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCGGCT 2352 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 | || || | || ||||||||||| ||||| || || || | || ||||| | |||| Sbjct 2351 AAAGTACGGCCATCTTCGAGCTGCTTTCCGGCAAAGATGAGCCTTTGCTGGTCTGGGGGA 2292 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | || ||||||| | || | || || | ||| | | | |||||| ||| || Sbjct 2291 ATGCCTTCCTTGT-CTTGGATCTTGGCCTTGACGTTGTCGATTGTGTCGGAACTCTCAAC 2233 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||| | || || || || || || || ||||| || || |||||||| Sbjct 2232 CTCGAGAGTGATTGTCTTTCCAGTGAGGGTCTTAACAAAGATCTGCAT 2185 >seq156932 Length=6713 Score = 82.4 bits (90), Expect = 7e-11 Identities = 159/230 (69%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | || || || || || ||||||||| || || || || | Sbjct 3529 CCACCACGCAGACGAAGAACAAGGTGAAGAGTCGACTCCTTCTGGATATTGTAATCCGCA 3588 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || || || | || || | |||||| || |||||||||| | ||| ||||| | ||| Sbjct 3589 AGAGTACGACCATCCTCCAACTGCTTCCCTGCGAATATCAACCTCTGCTGGTCTGGTGGA 3648 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGA---CTCC 41812 | | ||||| ||| ||| | ||||| | || | || | || | ||| |||| Sbjct 3649 ATCCCTTCCTTATCC-TGAATCTTTGCCTTCACATTGTCAATG-GTATC-CGAGCTCTCC 3705 Query 41813 ACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||||||| || ||||| || || || | ||||| |||||||||||||| Sbjct 3706 ACCTCCAAGGTGATCGTCTTCCCGGTTAAAGTCTTGACGAAAATCTGCAT 3755 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 459623180007200