Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Carthamus_20tinctorius_20[genbank_20GCA_5F001633085.1_202016-04-27]
463,906 sequences; 661,937,708 total letters
Query= NC_033780.1
Length=144510
Score E
Sequences producing significant alignments: (Bits) Value
seq284040 132 4e-26
seq62239 129 5e-25
seq25275 109 5e-19
seq304067 104 2e-17
seq228143 93.3 4e-14
seq156932 82.4 7e-11
>seq284040
Length=2693
Score = 132 bits (146), Expect = 4e-26
Identities = 157/210 (75%), Gaps = 2/210 (1%)
Strand=Plus/Minus
Query 41654 ACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCG 41713
|||||||||| |||| ||||||||| ||||| || |||| | || | |||| |||
Sbjct 967 ACCAGATGCAACGTGGACTCCTTCTGGATGTTGTAATCGGCCAAAGTCCTTCCGTCTTCG 908
Query 41714 AGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATG 41773
||||||||||||||||| |||| ||||| ||||||| || | | ||||||||| ||
Sbjct 907 AGCTGCTTGCCGGCGAAGATCAAACGCTGCTGGTCCGGTGGGATTCCTTCCTTGTCC-TG 849
Query 41774 ATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTT 41832
| | || || | ||| | | |||||| |||||||||| ||| ||||||||
Sbjct 848 AATCTTCGCCTTCACGTTATCGATCGTGTCGGAGCTTTCCACCTCCAACGTGATCGTTTT 789
Query 41833 ACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862
|| |||| |||||| ||||| ||||||||
Sbjct 788 TCCGGTCAACGTCTTCACGAAGATCTGCAT 759
>seq62239
Length=9780
Score = 129 bits (142), Expect = 5e-25
Identities = 170/234 (73%), Gaps = 4/234 (2%)
Strand=Plus/Plus
Query 41634 CGCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGG 41693
|||||||||| || || | || || || || ||| ||||||||| ||||| |||||||
Sbjct 5329 CGCCGCCGCGGAGGCGGAGGACGAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGG 5388
Query 41694 AGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGG 41753
||||| | |||| ||||||||||| |||||||| || ||||| || ||||||| |
Sbjct 5389 CTAGGGTCCTGCCGTCCTCGAGCTGCTTCCCGGCGAAGATGAGGCGTTGCTGGTCCGGCG 5448
Query 41754 GAACGCTCTCCTTGTCCATGATTTTTTGCTT--CAACGACGACACAGTGTCGCTCGACTC 41811
| | || |||||||| ||| || ||| || | || | |||||| || ||
Sbjct 5449 GGATGCCTTCCTTGTCTTGGATCTTGGCCTTGACATTGTCG--ATGGTGTCGGAGGATTC 5506
Query 41812 CACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865
||||| | ||||| ||||| || || || || || ||||| |||||||| ||
Sbjct 5507 GACCTCTAGGGTTATGGTTTTCCCGGTTAGGGTTTTCACGAAGATCTGCATCTT 5560
>seq25275
Length=8276
Score = 109 bits (120), Expect = 5e-19
Identities = 165/231 (71%), Gaps = 8/231 (3%)
Strand=Plus/Minus
Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695
||||| | || ||| | |||| || || || ||||||||| |||||||||||||
Sbjct 5017 CCGCCTCTTAAACGAAGAACCAAGTGAAGGGTTGACTCCTTCTGGATGTTATAGTCGGCA 4958
Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755
|| || || |||| ||||||||||| ||||| || ||||| | ||| ||||| | ||||
Sbjct 4957 AGAGTACGGCCGTCCTCGAGCTGCTTTCCGGCAAAGATCAGTCTCTGCTGGTCTGGGGGA 4898
Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTC---GCTCGACTC 41811
| | ||||||| | ||| |||| || | ||| | | | ||||| ||| ||
Sbjct 4897 ATACCTTCCTTGT-CTTGAATTTTAGCCTTCACGTTGTCAATGGTGTCAGAGCT---TTC 4842
Query 41812 CACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862
||||||| ||| || ||||| || || || || || || || || |||||
Sbjct 4841 GACCTCCAGCGTGATGGTTTTGCCGGTGAGGGTTTTGACAAAGATTTGCAT 4791
Score = 109 bits (120), Expect = 5e-19
Identities = 165/231 (71%), Gaps = 8/231 (3%)
Strand=Plus/Minus
Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695
||||| | || ||| | |||| || || ||| ||||||||| ||||| || ||||
Sbjct 5245 CCGCCTCTTAAACGAAGAACCAAGTGAAGGGTGGACTCCTTCTGTATGTTGTAATCGGCC 5186
Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755
| ||||| |||| ||||||||||||||||| || |||| | ||| ||||| | ||||
Sbjct 5185 AAAGTGCGACCGTCCTCGAGCTGCTTGCCGGCAAAGATCAACCTCTGCTGGTCTGGGGGA 5126
Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTC---GCTCGACTC 41811
| | ||||||||| |||||| |||| ||| | | |||||| ||| |||
Sbjct 5125 ATACCCTCCTTGTCTTGGATTTTCGCCTTC-ACGTTATCGATAGTGTCCGAGCT---CTC 5070
Query 41812 CACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862
|| |||| ||| || ||||| || || || || || || || || |||||
Sbjct 5069 GACTTCCAACGTGATGGTTTTCCCTGTTAGGGTTTTGACAAAGATTTGCAT 5019
Score = 104 bits (114), Expect = 2e-17
Identities = 164/231 (71%), Gaps = 8/231 (3%)
Strand=Plus/Minus
Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695
|| ||||| ||||| | |||| ||| || || ||||||||| |||||||| || |
Sbjct 6157 CCACCGCGAAGACGAAGAACCAAATGAAGGGTAGACTCCTTCTGGATGTTATAATCCGCA 6098
Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755
|| || | | || || |||||||| || || || ||||| | ||| || |||| ||
Sbjct 6097 AGAGTCCTTCCATCCTCAAGCTGCTTCCCAGCAAAAATCAGCCTCTGCTGATCCGGTGGG 6038
Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGA---CTC 41811
| | |||||||||| ||| | || |||| || | | | ||||| ||| |||
Sbjct 6037 ATCCCCTCCTTGTCC-TGAATCTTCGCTTTCACATTGTCGATCGTGTC---CGAACTCTC 5982
Query 41812 CACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862
|||||||| ||| || || || || |||| |||||| || || ||||||||
Sbjct 5981 CACCTCCAGCGTGATGGTCTTCCCTGTCAACGTCTTAACAAAGATCTGCAT 5931
Score = 102 bits (112), Expect = 7e-17
Identities = 161/228 (71%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695
|| || || ||||||| || || || || ||| ||||||||| || || |||||||
Sbjct 4789 CCTCCACGGAGACGTAGGACGAGGTGGAGTGTGGACTCCTTCTGGATATTGTAGTCGGCC 4730
Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755
| || || |||| ||||||||||||||||| || ||||| | || || || | ||||
Sbjct 4729 AAAGTTCGGCCGTCCTCGAGCTGCTTGCCGGCAAAGATCAGCCTTTGCTGATCTGGGGGA 4670
Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814
| | ||||||||| || |||| || | ||| | | | || ||| ||| ||
Sbjct 4669 ATCCCTTCCTTGTCC-TGGATTTTGGCCTTGACGTTGTCGATTGTATCGGAACTCTCGAC 4611
Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862
||| | || || || || || || || ||||| ||||| ||||||||
Sbjct 4610 CTCTAGGGTGATGGTCTTTCCAGTTAGTGTCTTAACGAAGATCTGCAT 4563
Score = 87.8 bits (96), Expect = 2e-12
Identities = 147/210 (70%), Gaps = 2/210 (1%)
Strand=Plus/Minus
Query 41654 ACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCG 41713
|||| |||||| || |||||||| || |||||||||| || || || | || ||
Sbjct 5911 ACCAAATGCAGAGTCGATTCCTTCTGGATATTATAGTCGGCAAGCGTACGGCCATCCTCA 5852
Query 41714 AGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATG 41773
||||||||||| || || ||||| | ||| ||||| | || | | |||||| ||| ||
Sbjct 5851 AGCTGCTTGCCTGCAAAGATCAGCCTCTGCTGGTCTGGTGGGATACCCTCCTTATCC-TG 5793
Query 41774 ATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTT 41832
| || |||| |||| | | | |||||| ||| || |||| || || || ||
Sbjct 5792 GATCTTCGCTTTAACGTTGTCAATGGTGTCGGAACTCTCGACTTCCAATGTGATAGTCTT 5733
Query 41833 ACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862
|| || | ||||| || || ||||||||
Sbjct 5732 CCCGGTTAAGGTCTTCACAAAGATCTGCAT 5703
Score = 82.4 bits (90), Expect = 7e-11
Identities = 135/192 (70%), Gaps = 2/192 (1%)
Strand=Plus/Minus
Query 41672 TCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 41731
|||||||||||||| ||||| | ||||| || | || || |||||||||||||| ||
Sbjct 5437 TCCTTCTGAATGTTGTAGTCTGCAAGGGTACGGCCATCCTCAAGCTGCTTGCCGGCAAAG 5378
Query 41732 ATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGAC 41791
|||| | |||||||| | || | | ||| || || |||||| |||| |||
Sbjct 5377 ATCAATCTTTGTTGGTCTGGTGGGATTCCCTCTTTATCTTGGATTTTCGCCTTC-ACGTT 5319
Query 41792 GAC-ACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTAC 41850
| | | |||||| ||| || |||| || || || || || |||| ||||| ||
Sbjct 5318 GTCGATGGTGTCGGAGCTCTCAACTTCCAGTGTGATGGTCTTTCCGGTCAAAGTCTTCAC 5259
Query 41851 GAAAATCTGCAT 41862
|| ||||||||
Sbjct 5258 AAAGATCTGCAT 5247
>seq304067
Length=4417
Score = 104 bits (114), Expect = 2e-17
Identities = 93/117 (79%), Gaps = 0/117 (0%)
Strand=Plus/Minus
Query 41634 CGCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGG 41693
|||||||||| || || | || || || ||||| ||||||||| ||||| |||||||
Sbjct 117 CGCCGCCGCGGAGGCGGAGGACGAGGTGGAGCGTCGACTCCTTCTGGATGTTGTAGTCGG 58
Query 41694 AGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCG 41750
||||| | |||| ||||||||||| |||||||| || |||||||| |||||||
Sbjct 57 CTAGGGTTCTGCCGTCCTCGAGCTGCTTCCCGGCGAAGATGAGGCGCTGCTGGTCCG 1
>seq228143
Length=6931
Score = 93.3 bits (102), Expect = 4e-14
Identities = 159/228 (70%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695
|| || |||||||| | |||| ||| || ||| |||||||| ||||| |||||||
Sbjct 2411 CCACCACGTAGACGGAGGACCAAATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCGGCT 2352
Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755
| || || | || ||||||||||| ||||| || || || | || ||||| | ||||
Sbjct 2351 AAAGTACGGCCATCTTCGAGCTGCTTTCCGGCAAAGATGAGCCTTTGCTGGTCTGGGGGA 2292
Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814
| || ||||||| | || | || || | ||| | | | |||||| ||| ||
Sbjct 2291 ATGCCTTCCTTGT-CTTGGATCTTGGCCTTGACGTTGTCGATTGTGTCGGAACTCTCAAC 2233
Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862
||| | || || || || || || || ||||| || || ||||||||
Sbjct 2232 CTCGAGAGTGATTGTCTTTCCAGTGAGGGTCTTAACAAAGATCTGCAT 2185
>seq156932
Length=6713
Score = 82.4 bits (90), Expect = 7e-11
Identities = 159/230 (69%), Gaps = 6/230 (3%)
Strand=Plus/Plus
Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695
|| || || ||||| | || || || || || ||||||||| || || || || |
Sbjct 3529 CCACCACGCAGACGAAGAACAAGGTGAAGAGTCGACTCCTTCTGGATATTGTAATCCGCA 3588
Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755
|| || || | || || | |||||| || |||||||||| | ||| ||||| | |||
Sbjct 3589 AGAGTACGACCATCCTCCAACTGCTTCCCTGCGAATATCAACCTCTGCTGGTCTGGTGGA 3648
Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGA---CTCC 41812
| | ||||| ||| ||| | ||||| | || | || | || | ||| ||||
Sbjct 3649 ATCCCTTCCTTATCC-TGAATCTTTGCCTTCACATTGTCAATG-GTATC-CGAGCTCTCC 3705
Query 41813 ACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862
||||||| || ||||| || || || | ||||| ||||||||||||||
Sbjct 3706 ACCTCCAAGGTGATCGTCTTCCCGGTTAAAGTCTTGACGAAAATCTGCAT 3755
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 459623180007200
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