Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Castanea_20mollissima_20[genbank_20GCA_5F000763605.1_202014-10-06] 133,589 sequences; 833,240,550 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq99200 140 3e-28 seq11270 113 5e-20 >seq99200 Length=725 Score = 140 bits (154), Expect = 3e-28 Identities = 269/394 (68%), Gaps = 2/394 (1%) Strand=Plus/Plus Query 16999 GATAAGTTCGTTAGAAAATGTCAACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATAT 17058 ||| || ||||| || ||||||| || ||||| |||| ||||| | ||| || || Sbjct 249 GATCAGCTCGTTGGAGAATGTCAGACCAGGCATGAGACCTCTCTTCTTGAGCCAGAAAAT 308 Query 17059 CGCGGCGAACGACCCAGAAAAGAATATACCCTCGACGGATGCAAACGCGATTAATCGTTC 17118 | |||||| ||||| || ||||| || ||||| |||| || || || | | |||| Sbjct 309 GGAGGCGAAAGACCCGGAGAAGAAGATGCCCTCAACGGCGGCGAATGCCACCAGACGTTG 368 Query 17119 GGCGTACGTCGCGTCTTTGTTACGAATCCATTTCTGCACCCACTCGGCTTT-TTGCTTTA 17177 |||| | | || || | | |||||| || | ||||||| || || |||| | Sbjct 369 GGCGAAACTGCTTTCCTTATCAGAGATCCATCTCAACGCCCACTCAGCCTTCTTGCGG-A 427 Query 17178 TGCAATCCATCGTTTCTATGGCCTTAAATAATTTCTCTTTTTCCTGTAGGTCGATTATAT 17237 |||| || || || || || | || | | || ||| | || | | || | | | Sbjct 428 TGCATGGAATAGTGTCGATAGCATCGAAGAGGTACTGTTTCTGCTTTGGCTCTTTCACAA 487 Query 17238 ACGTATCGATGAGTAGGCTGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGAAATC 17297 | ||||| ||||| | |||||||||||||||||| || |||||||| ||||| || | Sbjct 488 ATGTATCAATGAGCAAGCTGTACATTTCGGAGTGGATATTCTCCATCATGATCTGGAAAC 547 Query 17298 CGTAAAAGCATCGGGCTTCCGCTATTTGAACTTCCACGTAGAATCGTTCCGCTAGATTTT 17357 | ||||||||||| || || | || ||| || || | |||||| || | || || | Sbjct 548 CATAAAAGCATCGAGCCTCTGGTACTTGCACCTCACCCGAGAATCTCTCGACAAGGTTCT 607 Query 17358 CGTTCACGATGCCGTCGCTCGCGGCGAAAAACGC 17391 |||| || || ||||| || ||||| || || Sbjct 608 CGTTGACAATACCGTCAGAGGCAGCGAAGAAAGC 641 >seq11270 Length=18388 Score = 113 bits (124), Expect = 5e-20 Identities = 291/435 (67%), Gaps = 9/435 (2%) Strand=Plus/Plus Query 16960 CAGACATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGT 17019 ||| || ||||||||||| || | || ||||||| ||| | ||||| || || || Sbjct 5484 CAGGCACGCGAAATCGCAGTGGAGGCCTTCGTCTCGCGAGATCAACTCGTTGGAGAAGGT 5543 Query 17020 CAACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGAAAA 17079 ||||||||||| || || || |||| ||||||||||||| ||| || || || Sbjct 5544 TAACCCGGGCATTAACCCGCGCTTTTTTAGCCAAAATATCGCGCAGAAGCTACCGGAGAA 5603 Query 17080 GAATATACCCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGCGTCTTTGTT 17139 ||| || || |||||| | || || ||||| | | |||||| ||| | | || Sbjct 5604 GAAAATGCCTTCGACGCAGGCGAAAGCGATGAGCCTCTCGGCGAACGATTCTCCGCCGT- 5662 Query 17140 ACGAATCCATTTCTGCACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTTTCTATGGC 17199 || ||||| | | |||||||||| || | | | |||| | || || || || Sbjct 5663 -CG-ATCCACCGCAGGGCCCACTCGGCCTTCTTCGCCACGCAAGGAACGGTCTCCATCGC 5720 Query 17200 CTTAAATAATTTCTCTTTTTC-CTGTAG-GTCGATTATATACGTATCGATGAGTAGGCTG 17257 | || | | || ||| | | | ||| | ||||| || |||| | || ||| Sbjct 5721 GTGGAACA--GCCGGTTCTTCTCGGCCGAGTCCTTGATATAGGTCTCGAGCAAGAGACTG 5778 Query 17258 TACATTTCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTA-AAAGCATCGGGCTTC 17316 |||||||| ||||| || ||||| || || ||||| || || || ||||| || || || Sbjct 5779 TACATTTCAGAGTGGATATTCTCGATCGCAATCTGGAAGCCATAGAAAGC-GCGAGCCTC 5837 Query 17317 CGCTATTTGAACTTCCACGTAGAATCGTTCCGCTAGATTTTCGTTCACGATGCCGTCGCT 17376 || | ||| || ||| ||| | | | || ||||| || |||||||||||| Sbjct 5838 CGAAACTTGGACCTCCTTCATGAACCTTCCGGCCAGATTCTCCAAAACGATGCCGTCGGA 5897 Query 17377 CGCGGCGAAAAACGC 17391 |||||||| || || Sbjct 5898 GGCGGCGAAGAAGGC 5912 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 516681370010520