Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Castanea_20mollissima_20[genbank_20GCA_5F000763605.1_202014-10-06]
133,589 sequences; 833,240,550 total letters
Query= NC_001132.2
Length=161773
Score E
Sequences producing significant alignments: (Bits) Value
seq99200 140 3e-28
seq11270 113 5e-20
>seq99200
Length=725
Score = 140 bits (154), Expect = 3e-28
Identities = 269/394 (68%), Gaps = 2/394 (1%)
Strand=Plus/Plus
Query 16999 GATAAGTTCGTTAGAAAATGTCAACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATAT 17058
||| || ||||| || ||||||| || ||||| |||| ||||| | ||| || ||
Sbjct 249 GATCAGCTCGTTGGAGAATGTCAGACCAGGCATGAGACCTCTCTTCTTGAGCCAGAAAAT 308
Query 17059 CGCGGCGAACGACCCAGAAAAGAATATACCCTCGACGGATGCAAACGCGATTAATCGTTC 17118
| |||||| ||||| || ||||| || ||||| |||| || || || | | ||||
Sbjct 309 GGAGGCGAAAGACCCGGAGAAGAAGATGCCCTCAACGGCGGCGAATGCCACCAGACGTTG 368
Query 17119 GGCGTACGTCGCGTCTTTGTTACGAATCCATTTCTGCACCCACTCGGCTTT-TTGCTTTA 17177
|||| | | || || | | |||||| || | ||||||| || || |||| |
Sbjct 369 GGCGAAACTGCTTTCCTTATCAGAGATCCATCTCAACGCCCACTCAGCCTTCTTGCGG-A 427
Query 17178 TGCAATCCATCGTTTCTATGGCCTTAAATAATTTCTCTTTTTCCTGTAGGTCGATTATAT 17237
|||| || || || || || | || | | || ||| | || | | || | | |
Sbjct 428 TGCATGGAATAGTGTCGATAGCATCGAAGAGGTACTGTTTCTGCTTTGGCTCTTTCACAA 487
Query 17238 ACGTATCGATGAGTAGGCTGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGAAATC 17297
| ||||| ||||| | |||||||||||||||||| || |||||||| ||||| || |
Sbjct 488 ATGTATCAATGAGCAAGCTGTACATTTCGGAGTGGATATTCTCCATCATGATCTGGAAAC 547
Query 17298 CGTAAAAGCATCGGGCTTCCGCTATTTGAACTTCCACGTAGAATCGTTCCGCTAGATTTT 17357
| ||||||||||| || || | || ||| || || | |||||| || | || || |
Sbjct 548 CATAAAAGCATCGAGCCTCTGGTACTTGCACCTCACCCGAGAATCTCTCGACAAGGTTCT 607
Query 17358 CGTTCACGATGCCGTCGCTCGCGGCGAAAAACGC 17391
|||| || || ||||| || ||||| || ||
Sbjct 608 CGTTGACAATACCGTCAGAGGCAGCGAAGAAAGC 641
>seq11270
Length=18388
Score = 113 bits (124), Expect = 5e-20
Identities = 291/435 (67%), Gaps = 9/435 (2%)
Strand=Plus/Plus
Query 16960 CAGACATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGT 17019
||| || ||||||||||| || | || ||||||| ||| | ||||| || || ||
Sbjct 5484 CAGGCACGCGAAATCGCAGTGGAGGCCTTCGTCTCGCGAGATCAACTCGTTGGAGAAGGT 5543
Query 17020 CAACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGAAAA 17079
||||||||||| || || || |||| ||||||||||||| ||| || || ||
Sbjct 5544 TAACCCGGGCATTAACCCGCGCTTTTTTAGCCAAAATATCGCGCAGAAGCTACCGGAGAA 5603
Query 17080 GAATATACCCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGCGTCTTTGTT 17139
||| || || |||||| | || || ||||| | | |||||| ||| | | ||
Sbjct 5604 GAAAATGCCTTCGACGCAGGCGAAAGCGATGAGCCTCTCGGCGAACGATTCTCCGCCGT- 5662
Query 17140 ACGAATCCATTTCTGCACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTTTCTATGGC 17199
|| ||||| | | |||||||||| || | | | |||| | || || || ||
Sbjct 5663 -CG-ATCCACCGCAGGGCCCACTCGGCCTTCTTCGCCACGCAAGGAACGGTCTCCATCGC 5720
Query 17200 CTTAAATAATTTCTCTTTTTC-CTGTAG-GTCGATTATATACGTATCGATGAGTAGGCTG 17257
| || | | || ||| | | | ||| | ||||| || |||| | || |||
Sbjct 5721 GTGGAACA--GCCGGTTCTTCTCGGCCGAGTCCTTGATATAGGTCTCGAGCAAGAGACTG 5778
Query 17258 TACATTTCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTA-AAAGCATCGGGCTTC 17316
|||||||| ||||| || ||||| || || ||||| || || || ||||| || || ||
Sbjct 5779 TACATTTCAGAGTGGATATTCTCGATCGCAATCTGGAAGCCATAGAAAGC-GCGAGCCTC 5837
Query 17317 CGCTATTTGAACTTCCACGTAGAATCGTTCCGCTAGATTTTCGTTCACGATGCCGTCGCT 17376
|| | ||| || ||| ||| | | | || ||||| || ||||||||||||
Sbjct 5838 CGAAACTTGGACCTCCTTCATGAACCTTCCGGCCAGATTCTCCAAAACGATGCCGTCGGA 5897
Query 17377 CGCGGCGAAAAACGC 17391
|||||||| || ||
Sbjct 5898 GGCGGCGAAGAAGGC 5912
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 516681370010520
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |