Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Castanea_20mollissima_20[genbank_20GCA_5F000763605.1_202014-10-06] 133,589 sequences; 833,240,550 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq99200 114 1e-20 seq72010 107 2e-18 >seq99200 Length=725 Score = 114 bits (126), Expect = 1e-20 Identities = 261/393 (66%), Gaps = 0/393 (0%) Strand=Plus/Plus Query 16237 GATAAGTTCGTTGGAAAAAGTTAACCCTGGCATTTTTCCTCGTTTCTTTAACCAGAATAT 16296 ||| || |||||||| || || | || ||||| |||| ||||| | |||||| || Sbjct 249 GATCAGCTCGTTGGAGAATGTCAGACCAGGCATGAGACCTCTCTTCTTGAGCCAGAAAAT 308 Query 16297 CGCAGCAAATGACCCCGAAAAGAATATACCCTCAACAGATGCAAAAGCGATTAATCGTTC 16356 | || || ||||| || ||||| || |||||||| | || || || | | |||| Sbjct 309 GGAGGCGAAAGACCCGGAGAAGAAGATGCCCTCAACGGCGGCGAATGCCACCAGACGTTG 368 Query 16357 CGCGTACGTAGCATCTTTATTACGAATCCATTTCTGTACCCATTCGGCTTTTTGTTTTAT 16416 ||| | | || |||| | |||||| || |||| || || || | || Sbjct 369 GGCGAAACTGCTTTCCTTATCAGAGATCCATCTCAACGCCCACTCAGCCTTCTTGCGGAT 428 Query 16417 ACAATCCATCGTTTCTATGGCCTTAAACAATTTCTCTTTTTCCTGAATATCGATTATATA 16476 || || || || || || | || | | || ||| | || || | | | | Sbjct 429 GCATGGAATAGTGTCGATAGCATCGAAGAGGTACTGTTTCTGCTTTGGCTCTTTCACAAA 488 Query 16477 CGTATCAATCAGTAAACTGTACATTTCTGAGTGTATGTTCTCTATGGCTATCTGAAATCC 16536 |||||||| || || ||||||||||| ||||| || ||||| || ||||| || || Sbjct 489 TGTATCAATGAGCAAGCTGTACATTTCGGAGTGGATATTCTCCATCATGATCTGGAAACC 548 Query 16537 ATAGAAGCATCGAGCCTCCGCTATTTGTACTTCCACGTAAAATCGTTCCGCCAGGTTCTC 16596 ||| |||||||||||||| | || ||| || || | | |||| || | |||||||| Sbjct 549 ATAAAAGCATCGAGCCTCTGGTACTTGCACCTCACCCGAGAATCTCTCGACAAGGTTCTC 608 Query 16597 ATTCACGATACCGTCACTTGCAGCAAAAAACGC 16629 || || ||||||||| ||||| || || || Sbjct 609 GTTGACAATACCGTCAGAGGCAGCGAAGAAAGC 641 >seq72010 Length=1221 Score = 107 bits (118), Expect = 2e-18 Identities = 195/285 (68%), Gaps = 3/285 (1%) Strand=Plus/Minus Query 16474 ATACGTATCAATCAGTAAACTGTACATTTCTGAGTGTATGTTCTCTATGGCTATCTGAAA 16533 ||| ||||| ||||| | | |||||| || ||||| |||||||| || ||||| || Sbjct 997 ATAGGTATCGATCAGGAGAGAGTACATCTCAGAGTGGATGTTCTCGATCATGATCTGGAA 938 Query 16534 TCCATAGAAGCATCGAGCCTCCGCTATTTGTACTTCCACGTAAAATCGTTCCGCCAGGTT 16593 ||||||||||| ||||| || | || ||| ||||| | | ||||| || || ||| Sbjct 937 ACCATAGAAGCAACGAGCTTCTGGTACTTGAACTTCACCTGAGAATCGCTCGAGCAAGTT 878 Query 16594 CTCATTCACGATACCGTCACTTGCAGCAAAAAACGCCAATATGTGCTTAATGAAATATTT 16653 ||| || |||||||| || ||||| || || || | | ||| || || || Sbjct 877 CTCGTTTACGATACCATCGGAGGCAGCGAAGAAGGCGAGAACGTGAGAGATAAAGTAACG 818 Query 16654 TTCGTCAGATGTAAGA---ATATGCCAATCTTTTAAATCTTTGGATATATCCACTTCTTC 16710 || ||| ||||| | | ||| || | | ||| ||||||| ||| || ||||| Sbjct 817 CTCATCATCGTTAAGACGGTTGTTCCAGTCGTGAAGATCCTTGGATAGATCGACCTCTTC 758 Query 16711 TGGCGTCCAAAAGCTAGCCACTGCCTTTTTATACATTTTCCAAAT 16755 | ||||| ||| || |||| || || ||||||| ||| || Sbjct 757 AGCAGTCCAGAAGGATGCTTCTGCTTTCTTGTACATTTGCCAGAT 713 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 510560408271480