Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Castanea_20mollissima_20[genbank_20GCA_5F000763605.1_202014-10-06] 133,589 sequences; 833,240,550 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq78534 145 9e-30 seq57685 136 5e-27 seq11270 127 2e-24 seq588 84.2 3e-11 >seq78534 Length=1057 Score = 145 bits (160), Expect = 9e-30 Identities = 523/803 (65%), Gaps = 24/803 (3%) Strand=Plus/Minus Query 53486 GCTTCCAGGCTATCAAATGGATAATTTAAGAGA-ATAAACGCGTCTGCTAATCCTTGAAC 53544 ||||| ||||||||||||| | | | || || || || || || || ||||| || Sbjct 882 GCTTCGGGGCTATCAAATGGC-ATTCGCAAAGCCATGAATGCATCAGCCAAACCTTGTAC 824 Query 53545 ACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCA-GCTTCTGGAATAGGATAAT 53603 ||| | || || || | ||||||| | || | |||| ||||| || | |||||| Sbjct 823 ACCCAGGCCAATGGGACGATGTCTCATGTT-GCTCTTTCGTGCTTCGGGCACAGGATAGA 765 Query 53604 AATTAATATCTATAATTTTATTGAGGTTTC-TGACAATTACTTTGACCACATCCTTCAGT 53662 | || || | ||||| || || | ||| | || || | || |||| |||| | || | Sbjct 764 AGTTGATGTTGATAATCTTGTTCAAGTTGCGTGTCA-TGACCTTGATGACATTATGCAAT 706 Query 53663 TTGAGAAAATCAAATTGTCCATC----TATTACAAACATGTT--CAATGCAATAGATGCC 53716 ||||||| | ||| || | | | | ||| | || || | ||| || Sbjct 705 CCCTGAAAATCGTAGATTCCTTCGGCCTGGTTGACAAATGCTGGCAGTGAGACAGACGCG 646 Query 53717 AGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTA 53776 ||||| ||||| || || |||| | | | | ||| | || || || ||||| || || Sbjct 645 AGATTGCAAACTGCGACTTCATCTGGAGCAGTATACTCAATGATTTCGGTGCAGAGGTTG 586 Query 53777 CTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAA 53836 ||||||| ||||| | || | ||| || ||||| ||| || ||||| || || Sbjct 585 GATGACTTGATCGTTCCCAGGTTCTTTTGGTTGCTCTTGCGGTTGCAGGCATCTTTGTAC 526 Query 53837 AGAATGAATGGCGTACCAGTTTCAATCTGGGATTCTATAATCGCTTTCCAGACGACACGA 53896 || |||||||| | ||||| ||| |||| | || || || || | ||| | || Sbjct 525 AGCATGAATGGATTGCCAGTCTCAGTCTGAGCCTCAATGATGGCATACCACAGTTTCTGA 466 Query 53897 GCCTTTATTATAGATTTGTATCTCTTTTCT--CTT-TCGTATAGTGTATACAATCGTTCA 53953 ||||| ||| | | | | |||| || ||| || ||| || |||| || Sbjct 465 GCCTTAATTGTC---TGGCGGCCCTTTCCTGCCTTCTCATATTTGGTGAACAAGGCCTCG 409 Query 53954 AACTCGTCTCCCCAAACATTGTC---CAATCCAGGACATTCATCCGGACACATCAACGAC 54010 || ||||| || | || ||| ||| ||||||||||||| |||||||||| | | Sbjct 408 AATTCGTCGCCGTAG-CA--GTCAGACAAACCAGGACATTCATTGGGACACATCAGTGTC 352 Query 54011 CACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAAT 54070 || ||| | | | | ||||| ||||| || || ||||||||||| ||||| || Sbjct 351 CAGTCTGCATTCTTTTCTACTCGCTTCATGAATAGGTCAGGAATCCAGAGAGCGTAGAAG 292 Query 54071 AGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATA 54130 |||||||||| ||| ||| || || || |||||| | | | ||| || | | Sbjct 291 AGATCTCTGGCTCTGACTTCTTCTTTGCCGTGGTTCTTTCTCAAGTTGAGCCACTCGAAT 232 Query 54131 ATATCAGAATGCCACGGTTCCAAGTATATGGTCATAACTCCAGGCCGTTTGTTTCCTCCC 54190 | ||||| ||||| || || | ||| |||| | | || || | ||||| || || Sbjct 231 ACATCAGCGTGCCATGGCTCAAGGTAAATGGCGAAGGCACCTGGTCTCTTGTTGCCGCCT 172 Query 54191 TGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGAT 54250 ||||| | ||| | ||| ||||| | | | |||| || ||| || | | ||| || || Sbjct 171 TGATCGACGTACCGAGCAGTGTTGTCAAAGACTCGCAGCATAGGCGTCAGACCGTTCGAA 112 Query 54251 GCACCATTGGTCCCGGAGATATA 54273 | || || || || | ||| || Sbjct 111 GTGCCGTTTGTACCCGCGATGTA 89 >seq57685 Length=1792 Score = 136 bits (150), Expect = 5e-27 Identities = 382/579 (66%), Gaps = 8/579 (1%) Strand=Plus/Plus Query 53981 CCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATA 54040 ||||| || || | ||| ||||||| || ||| ||||| | | || || || ||||| Sbjct 1216 CCAGGGCACTCGTTCGGGCACATCAGCGTCCAATCTCCATTCTGCTCGACACGCTTCATG 1275 Query 54041 AAGAGATCAGGAATCCAAAGAGCTATA-AATAGATCTCTGGTTCTATGTTCCTCGTTTCC 54099 || ||||| |||||||| || || ||| || || || | | | ||||| || || Sbjct 1276 AAAAGATCGGGAATCCAGAGTGC-ATAGAAGAGGTCACGAGCACGGACCTCCTCCTTGCC 1334 Query 54100 TGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATAT 54159 ||||| |||||| ||||| || | | ||||| ||||| || || | ||| || Sbjct 1335 GTGGTTCTTGCGAAGATCCAGGAAGGCGAAGACATCAGCGTGCCATGGCTCGAGGTACAT 1394 Query 54160 GGTCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATA 54219 || | | || || || ||||| || || || || | || | ||| || || || | Sbjct 1395 GGCAAAGGCGCCGGGACGCTTGTTGCCACCTTGGTCGACATAACGAGCAGTATTGTTGAA 1454 Query 54220 AACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCC 54279 || | | |||||| | | ||||||||||| |||||||| ||| || || || Sbjct 1455 GACACGAAGCATTGGTACCAGACCATTGGATGTGCCATTGGTGCCGCCAATGTACGAACC 1514 Query 54280 ACTGGCACGAATATTACTAA--TTGATAGACCTATCCCCCCTGCCATTTTAGAGATTAAT 54337 | | ||||| || || ||| | || || || || || | || ||||| | | Sbjct 1515 AGTCGCACGGATGCGGTGAACGTTG--AACCCGATGCCGCCAGCATTCTTCGAGATCATT 1572 Query 54338 GCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGA 54397 ||||| || | ||||| ||||| ||||| || || || ||| | | || | || Sbjct 1573 GCGCAGGTCTTGAGTGTATCGTAGATACCCTCGATGCTGTCCTCCTTGACGTCGATGAGG 1632 Query 54398 AAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGC 54457 || ||| | || || | ||| || ||| | || | || || ||||||||| Sbjct 1633 AAGCAGGAGGCCAGCTGTGGGTTGGGAGTACCAGCACTGAAGAGTGTCGGCGAAGCGTGC 1692 Query 54458 GTAAACCATTTTTCAGA-AAGTAGATTGTACGTCTCGATAGCTGAGTCTATATCCCATTG 54516 || || | || | || | |||| ||||| |||||||| || | || |||||| Sbjct 1693 GTGAAGTACTTGTTTGACATGTAG-TTGTAGGTCTCGATGGCAGCCTCGATATCCTCGCC 1751 Query 54517 ATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGG 54555 |||||| || || ||||||||||| | ||| |||||||| Sbjct 1752 ATGAATGCCAACGGCGACACGCATGATCATCTGCTGAGG 1790 >seq11270 Length=18388 Score = 127 bits (140), Expect = 2e-24 Identities = 379/580 (65%), Gaps = 10/580 (2%) Strand=Plus/Plus Query 24135 CATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGT 24194 || |||||||||||||| || || ||||||| || || |||||||| || || | Sbjct 5488 CACGCGAAATCGCAGTGGAGGCCTTCGTCTCGCGAGATCAACTCGTTGGAGAAGGTTAAC 5547 Query 24195 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGAT-CCAGAAAAGAA 24253 |||||||||| || |||||||| ||||||||||| | |||| | | | || || ||||| Sbjct 5548 CCGGGCATTAACCCGCGCTTTTTTAGCCAAAATATCG-CGCAGAAGCTACCGGAGAAGAA 5606 Query 24254 AATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATAAC----CGGCGCTGTCAT 24309 ||| ||||| || || || || || || || || | ||| | ||| ||| Sbjct 5607 AATGCCTTCGACGCAGGCGAAAGCGATGAGCCTCTCGGC-GAACGATTCTCCGCCGTC-- 5663 Query 24310 GTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCAT 24369 |||||| | ||||| ||||||||||| || ||||| | ||||| || || | Sbjct 5664 -GATCCACCGCAGGGCCCACTCGGCCTTCTTCGCCACGCAAGGAACGGTCTCCATCGCGT 5722 Query 24370 TAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACA 24429 || || ||| || || || || | ||| || || | ||| ||||| |||| Sbjct 5723 GGAACAGCCGGTTCTTCTCGGCCGAGTCCTTGATATAGGTCTCGAGCAAGAGACTGTACA 5782 Query 24430 TTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAA 24489 |||| || || || || || || || || || || || |||||| | |||||| | || Sbjct 5783 TTTCAGAGTGGATATTCTCGATCGCAATCTGGAAGCCATAGAAAGCGCGAGCCTCCGAAA 5842 Query 24490 TCTGTACTTCTATACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTG 24549 || || || | || | | | || | ||| || || || ||||| ||| | Sbjct 5843 CTTGGACCTCCTTCATGAACCTTCCGGCCAGATTCTCCAAAACGATGCCGTCGGAGGCGG 5902 Query 24550 CAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAAT 24609 | || || || | || || | | || | | ||| | ||||| || | ||| | Sbjct 5903 CGAAGAAGGCGAGCACGTGAGTGACGAAGTGCCTCTCGCCGTCGGTTAGGTTTTCCCAGT 5962 Query 24610 CATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTT 24669 | | || || | ||| || || || | ||||| || || ||||| ||||| | Sbjct 5963 GACGTAAGTCGCCGGAGAGATCGACCTCCTCTGCGGTCCAGAACGAGGCCTCGGCCTTCT 6022 Query 24670 TATACATATTCCAGATGTCATGATATTGAATTGGAAAAAT 24709 | ||||| | |||||| || | || ||||| || || || Sbjct 6023 TGTACATCTCCCAGATCTCCGGGTACTGAATCGGGAACAT 6062 >seq588 Length=109198 Score = 84.2 bits (92), Expect = 3e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 54425 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTG 54484 || || ||||| || | || |||||||| || || ||||| | ||| | | || | Sbjct 12940 GTCCCTGCATTGAAAAGAGTGGGAGAAGCATGAGTGAACCACCGCTGAGACATCATATGG 12881 Query 54485 TACGTCTCGATAGCTGAGTCTATATCC-CATTGATGAATTCCTACTGCGACACGCATTAA 54543 || || | |||| |||| || ||||| | ||| |||||||| || | || | |||||| Sbjct 12880 TATGTTTTGATAACTGAATCAATATCATCCTTG-TGAATTCCAACAGAAACCCTCATTAA 12822 Query 54544 CATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAGCAAGTAGGATTTTTCCAA 54603 |||||||||||| ||||| || | ||| | | |||| | ||| || | || | Sbjct 12821 CATGTGCTGAGGCCTTTCTACAACCTTCCCTTGGACCTTCAATAGGTAAGACCTCTCAAG 12762 Query 54604 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 54651 ||||| |||||||| || | || |||||||| || || || || Sbjct 12761 GGTTTTGAAACCAAAGTAATCATAGTCAAAGTCTCTATCATAGATGAT 12714 Score = 84.2 bits (92), Expect = 3e-11 Identities = 112/154 (73%), Gaps = 4/154 (3%) Strand=Plus/Minus Query 53924 TCTCTTTCGTATAGTGTATACAATCGTTCAAACTCGTCTCCCCAAACATTGTCCAATCCA 53983 |||||||| || | || |||||| ||||| | ||| |||||| || |||| || Sbjct 13712 TCTCTTTCATACTGGGTGTACAATTTCTCAAATTTGTCACCCCAACAATCTGCCAAACCT 13653 Query 53984 GGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTC--ACTCGTTTCATAA 54041 ||| | |||| || || | ||| ||||| ||||| | | ||| |||| || ||| | Sbjct 13652 GGAGACTCATTAGGGCAAAACAATGACCATTCTCCAT--TGCTTTGAACTCTTTCCATGA 13595 Query 54042 AGAGATCAGGAATCCAAAGAGCTATAAATAGATC 54075 |||||||||||| ||||||||| ||| ||||| Sbjct 13594 AGAGATCAGGAACCCAAAGAGCATAAAACAGATC 13561 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 592730166564720