Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Castanea_20mollissima_20[genbank_20GCA_5F000763605.1_202014-10-06]
133,589 sequences; 833,240,550 total letters
Query= NC_001611.1
Length=185578
Score E
Sequences producing significant alignments: (Bits) Value
seq78534 145 9e-30
seq57685 136 5e-27
seq11270 127 2e-24
seq588 84.2 3e-11
>seq78534
Length=1057
Score = 145 bits (160), Expect = 9e-30
Identities = 523/803 (65%), Gaps = 24/803 (3%)
Strand=Plus/Minus
Query 53486 GCTTCCAGGCTATCAAATGGATAATTTAAGAGA-ATAAACGCGTCTGCTAATCCTTGAAC 53544
||||| ||||||||||||| | | | || || || || || || || ||||| ||
Sbjct 882 GCTTCGGGGCTATCAAATGGC-ATTCGCAAAGCCATGAATGCATCAGCCAAACCTTGTAC 824
Query 53545 ACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCA-GCTTCTGGAATAGGATAAT 53603
||| | || || || | ||||||| | || | |||| ||||| || | ||||||
Sbjct 823 ACCCAGGCCAATGGGACGATGTCTCATGTT-GCTCTTTCGTGCTTCGGGCACAGGATAGA 765
Query 53604 AATTAATATCTATAATTTTATTGAGGTTTC-TGACAATTACTTTGACCACATCCTTCAGT 53662
| || || | ||||| || || | ||| | || || | || |||| |||| | || |
Sbjct 764 AGTTGATGTTGATAATCTTGTTCAAGTTGCGTGTCA-TGACCTTGATGACATTATGCAAT 706
Query 53663 TTGAGAAAATCAAATTGTCCATC----TATTACAAACATGTT--CAATGCAATAGATGCC 53716
||||||| | ||| || | | | | ||| | || || | ||| ||
Sbjct 705 CCCTGAAAATCGTAGATTCCTTCGGCCTGGTTGACAAATGCTGGCAGTGAGACAGACGCG 646
Query 53717 AGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTA 53776
||||| ||||| || || |||| | | | | ||| | || || || ||||| || ||
Sbjct 645 AGATTGCAAACTGCGACTTCATCTGGAGCAGTATACTCAATGATTTCGGTGCAGAGGTTG 586
Query 53777 CTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAA 53836
||||||| ||||| | || | ||| || ||||| ||| || ||||| || ||
Sbjct 585 GATGACTTGATCGTTCCCAGGTTCTTTTGGTTGCTCTTGCGGTTGCAGGCATCTTTGTAC 526
Query 53837 AGAATGAATGGCGTACCAGTTTCAATCTGGGATTCTATAATCGCTTTCCAGACGACACGA 53896
|| |||||||| | ||||| ||| |||| | || || || || | ||| | ||
Sbjct 525 AGCATGAATGGATTGCCAGTCTCAGTCTGAGCCTCAATGATGGCATACCACAGTTTCTGA 466
Query 53897 GCCTTTATTATAGATTTGTATCTCTTTTCT--CTT-TCGTATAGTGTATACAATCGTTCA 53953
||||| ||| | | | | |||| || ||| || ||| || |||| ||
Sbjct 465 GCCTTAATTGTC---TGGCGGCCCTTTCCTGCCTTCTCATATTTGGTGAACAAGGCCTCG 409
Query 53954 AACTCGTCTCCCCAAACATTGTC---CAATCCAGGACATTCATCCGGACACATCAACGAC 54010
|| ||||| || | || ||| ||| ||||||||||||| |||||||||| | |
Sbjct 408 AATTCGTCGCCGTAG-CA--GTCAGACAAACCAGGACATTCATTGGGACACATCAGTGTC 352
Query 54011 CACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAAT 54070
|| ||| | | | | ||||| ||||| || || ||||||||||| ||||| ||
Sbjct 351 CAGTCTGCATTCTTTTCTACTCGCTTCATGAATAGGTCAGGAATCCAGAGAGCGTAGAAG 292
Query 54071 AGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATA 54130
|||||||||| ||| ||| || || || |||||| | | | ||| || | |
Sbjct 291 AGATCTCTGGCTCTGACTTCTTCTTTGCCGTGGTTCTTTCTCAAGTTGAGCCACTCGAAT 232
Query 54131 ATATCAGAATGCCACGGTTCCAAGTATATGGTCATAACTCCAGGCCGTTTGTTTCCTCCC 54190
| ||||| ||||| || || | ||| |||| | | || || | ||||| || ||
Sbjct 231 ACATCAGCGTGCCATGGCTCAAGGTAAATGGCGAAGGCACCTGGTCTCTTGTTGCCGCCT 172
Query 54191 TGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGAT 54250
||||| | ||| | ||| ||||| | | | |||| || ||| || | | ||| || ||
Sbjct 171 TGATCGACGTACCGAGCAGTGTTGTCAAAGACTCGCAGCATAGGCGTCAGACCGTTCGAA 112
Query 54251 GCACCATTGGTCCCGGAGATATA 54273
| || || || || | ||| ||
Sbjct 111 GTGCCGTTTGTACCCGCGATGTA 89
>seq57685
Length=1792
Score = 136 bits (150), Expect = 5e-27
Identities = 382/579 (66%), Gaps = 8/579 (1%)
Strand=Plus/Plus
Query 53981 CCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATA 54040
||||| || || | ||| ||||||| || ||| ||||| | | || || || |||||
Sbjct 1216 CCAGGGCACTCGTTCGGGCACATCAGCGTCCAATCTCCATTCTGCTCGACACGCTTCATG 1275
Query 54041 AAGAGATCAGGAATCCAAAGAGCTATA-AATAGATCTCTGGTTCTATGTTCCTCGTTTCC 54099
|| ||||| |||||||| || || ||| || || || | | | ||||| || ||
Sbjct 1276 AAAAGATCGGGAATCCAGAGTGC-ATAGAAGAGGTCACGAGCACGGACCTCCTCCTTGCC 1334
Query 54100 TGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATAT 54159
||||| |||||| ||||| || | | ||||| ||||| || || | ||| ||
Sbjct 1335 GTGGTTCTTGCGAAGATCCAGGAAGGCGAAGACATCAGCGTGCCATGGCTCGAGGTACAT 1394
Query 54160 GGTCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATA 54219
|| | | || || || ||||| || || || || | || | ||| || || || |
Sbjct 1395 GGCAAAGGCGCCGGGACGCTTGTTGCCACCTTGGTCGACATAACGAGCAGTATTGTTGAA 1454
Query 54220 AACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCC 54279
|| | | |||||| | | ||||||||||| |||||||| ||| || || ||
Sbjct 1455 GACACGAAGCATTGGTACCAGACCATTGGATGTGCCATTGGTGCCGCCAATGTACGAACC 1514
Query 54280 ACTGGCACGAATATTACTAA--TTGATAGACCTATCCCCCCTGCCATTTTAGAGATTAAT 54337
| | ||||| || || ||| | || || || || || | || ||||| | |
Sbjct 1515 AGTCGCACGGATGCGGTGAACGTTG--AACCCGATGCCGCCAGCATTCTTCGAGATCATT 1572
Query 54338 GCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGA 54397
||||| || | ||||| ||||| ||||| || || || ||| | | || | ||
Sbjct 1573 GCGCAGGTCTTGAGTGTATCGTAGATACCCTCGATGCTGTCCTCCTTGACGTCGATGAGG 1632
Query 54398 AAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGC 54457
|| ||| | || || | ||| || ||| | || | || || |||||||||
Sbjct 1633 AAGCAGGAGGCCAGCTGTGGGTTGGGAGTACCAGCACTGAAGAGTGTCGGCGAAGCGTGC 1692
Query 54458 GTAAACCATTTTTCAGA-AAGTAGATTGTACGTCTCGATAGCTGAGTCTATATCCCATTG 54516
|| || | || | || | |||| ||||| |||||||| || | || ||||||
Sbjct 1693 GTGAAGTACTTGTTTGACATGTAG-TTGTAGGTCTCGATGGCAGCCTCGATATCCTCGCC 1751
Query 54517 ATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGG 54555
|||||| || || ||||||||||| | ||| ||||||||
Sbjct 1752 ATGAATGCCAACGGCGACACGCATGATCATCTGCTGAGG 1790
>seq11270
Length=18388
Score = 127 bits (140), Expect = 2e-24
Identities = 379/580 (65%), Gaps = 10/580 (2%)
Strand=Plus/Plus
Query 24135 CATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGT 24194
|| |||||||||||||| || || ||||||| || || |||||||| || || |
Sbjct 5488 CACGCGAAATCGCAGTGGAGGCCTTCGTCTCGCGAGATCAACTCGTTGGAGAAGGTTAAC 5547
Query 24195 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGAT-CCAGAAAAGAA 24253
|||||||||| || |||||||| ||||||||||| | |||| | | | || || |||||
Sbjct 5548 CCGGGCATTAACCCGCGCTTTTTTAGCCAAAATATCG-CGCAGAAGCTACCGGAGAAGAA 5606
Query 24254 AATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATAAC----CGGCGCTGTCAT 24309
||| ||||| || || || || || || || || | ||| | ||| |||
Sbjct 5607 AATGCCTTCGACGCAGGCGAAAGCGATGAGCCTCTCGGC-GAACGATTCTCCGCCGTC-- 5663
Query 24310 GTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCAT 24369
|||||| | ||||| ||||||||||| || ||||| | ||||| || || |
Sbjct 5664 -GATCCACCGCAGGGCCCACTCGGCCTTCTTCGCCACGCAAGGAACGGTCTCCATCGCGT 5722
Query 24370 TAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACA 24429
|| || ||| || || || || | ||| || || | ||| ||||| ||||
Sbjct 5723 GGAACAGCCGGTTCTTCTCGGCCGAGTCCTTGATATAGGTCTCGAGCAAGAGACTGTACA 5782
Query 24430 TTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAA 24489
|||| || || || || || || || || || || || |||||| | |||||| | ||
Sbjct 5783 TTTCAGAGTGGATATTCTCGATCGCAATCTGGAAGCCATAGAAAGCGCGAGCCTCCGAAA 5842
Query 24490 TCTGTACTTCTATACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTG 24549
|| || || | || | | | || | ||| || || || ||||| ||| |
Sbjct 5843 CTTGGACCTCCTTCATGAACCTTCCGGCCAGATTCTCCAAAACGATGCCGTCGGAGGCGG 5902
Query 24550 CAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAAT 24609
| || || || | || || | | || | | ||| | ||||| || | ||| |
Sbjct 5903 CGAAGAAGGCGAGCACGTGAGTGACGAAGTGCCTCTCGCCGTCGGTTAGGTTTTCCCAGT 5962
Query 24610 CATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTT 24669
| | || || | ||| || || || | ||||| || || ||||| ||||| |
Sbjct 5963 GACGTAAGTCGCCGGAGAGATCGACCTCCTCTGCGGTCCAGAACGAGGCCTCGGCCTTCT 6022
Query 24670 TATACATATTCCAGATGTCATGATATTGAATTGGAAAAAT 24709
| ||||| | |||||| || | || ||||| || || ||
Sbjct 6023 TGTACATCTCCCAGATCTCCGGGTACTGAATCGGGAACAT 6062
>seq588
Length=109198
Score = 84.2 bits (92), Expect = 3e-11
Identities = 157/228 (69%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 54425 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTG 54484
|| || ||||| || | || |||||||| || || ||||| | ||| | | || |
Sbjct 12940 GTCCCTGCATTGAAAAGAGTGGGAGAAGCATGAGTGAACCACCGCTGAGACATCATATGG 12881
Query 54485 TACGTCTCGATAGCTGAGTCTATATCC-CATTGATGAATTCCTACTGCGACACGCATTAA 54543
|| || | |||| |||| || ||||| | ||| |||||||| || | || | ||||||
Sbjct 12880 TATGTTTTGATAACTGAATCAATATCATCCTTG-TGAATTCCAACAGAAACCCTCATTAA 12822
Query 54544 CATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAGCAAGTAGGATTTTTCCAA 54603
|||||||||||| ||||| || | ||| | | |||| | ||| || | || |
Sbjct 12821 CATGTGCTGAGGCCTTTCTACAACCTTCCCTTGGACCTTCAATAGGTAAGACCTCTCAAG 12762
Query 54604 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 54651
||||| |||||||| || | || |||||||| || || || ||
Sbjct 12761 GGTTTTGAAACCAAAGTAATCATAGTCAAAGTCTCTATCATAGATGAT 12714
Score = 84.2 bits (92), Expect = 3e-11
Identities = 112/154 (73%), Gaps = 4/154 (3%)
Strand=Plus/Minus
Query 53924 TCTCTTTCGTATAGTGTATACAATCGTTCAAACTCGTCTCCCCAAACATTGTCCAATCCA 53983
|||||||| || | || |||||| ||||| | ||| |||||| || |||| ||
Sbjct 13712 TCTCTTTCATACTGGGTGTACAATTTCTCAAATTTGTCACCCCAACAATCTGCCAAACCT 13653
Query 53984 GGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTC--ACTCGTTTCATAA 54041
||| | |||| || || | ||| ||||| ||||| | | ||| |||| || ||| |
Sbjct 13652 GGAGACTCATTAGGGCAAAACAATGACCATTCTCCAT--TGCTTTGAACTCTTTCCATGA 13595
Query 54042 AGAGATCAGGAATCCAAAGAGCTATAAATAGATC 54075
|||||||||||| ||||||||| ||| |||||
Sbjct 13594 AGAGATCAGGAACCCAAAGAGCATAAAACAGATC 13561
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 592730166564720
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