Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Castanea_20mollissima_20[genbank_20GCA_5F000763605.1_202014-10-06]
133,589 sequences; 833,240,550 total letters
Query= NC_001623.1
Length=133894
Score E
Sequences producing significant alignments: (Bits) Value
seq16751 102 7e-17
seq10846 102 7e-17
seq1584 96.9 3e-15
seq23762 93.3 4e-14
seq3871 91.5 1e-13
seq13269 86.0 5e-12
seq1750 82.4 7e-11
>seq16751
Length=10463
Score = 102 bits (112), Expect = 7e-17
Identities = 149/211 (71%), Gaps = 0/211 (0%)
Strand=Plus/Minus
Query 28961 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 29020
|||||| || || | || || ||||| || |||||||| ||| || ||| | |
Sbjct 6292 AATGCAGATTTTTGTGAAGACTTTGACCGGAAAAACCATAACCTTGGAGGTTGAAAGCTC 6233
Query 29021 AGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 29080
||| || | | | || | ||| || || || || |||||| | || ||| ||
Sbjct 6232 AGACACTATTGACAATGTCAAGGCTAAGATACAAGACAAGGAAGGTATCCCACCAGACCA 6173
Query 29081 ACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAA 29140
|||||| ||||||||||| || || ||||| |||||| | ||| | || ||||||||
Sbjct 6172 ACAAAGGCTTATCTTTGCAGGAAAGCAACTTGAAGATGGAAGGACTCTTGCAGATTACAA 6113
Query 29141 TATTCAGAAGGAATCTACTCTTCACATGGTG 29171
||| |||||||| ||||| ||||| |||||
Sbjct 6112 TATCCAGAAGGAGTCTACCCTTCATCTGGTG 6082
>seq10846
Length=19378
Score = 102 bits (112), Expect = 7e-17
Identities = 149/211 (71%), Gaps = 0/211 (0%)
Strand=Plus/Minus
Query 28961 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 29020
|||||| || ||| | || || ||||| || |||||||| ||| || ||| | |
Sbjct 11275 AATGCAGATTTTCGTGAAGACTTTGACTGGGAAAACCATAACCTTGGAGGTTGAAAGCTC 11216
Query 29021 AGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 29080
||| || | | | || | ||| ||| || || || |||||| | || ||| ||
Sbjct 11215 AGATACTATTGACAATGTGAAGGCAAAGATACAAGACAAGGAAGGTATACCACCAGACCA 11156
Query 29081 ACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAA 29140
||||| ||||| ||||| ||||| || || |||||| | ||| | || ||||||||
Sbjct 11155 GCAAAGGCTTATTTTTGCAGGCAAGCAGCTTGAAGATGGAAGGACTCTTGCAGATTACAA 11096
Query 29141 TATTCAGAAGGAATCTACTCTTCACATGGTG 29171
||| |||||||| ||||| ||||| |||||
Sbjct 11095 TATACAGAAGGAGTCTACCCTTCATCTGGTG 11065
Score = 84.2 bits (92), Expect = 2e-11
Identities = 73/91 (80%), Gaps = 0/91 (0%)
Strand=Plus/Minus
Query 29075 AGATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGA 29134
|||||| || || ||||| ||||| |||||||| || |||||| | ||| |||| ||
Sbjct 10933 AGATCAGCAGAGGCTTATTTTTGCAGGCAAACAGCTTGAAGATGGAAGGACTCTGGCTGA 10874
Query 29135 TTACAATATTCAGAAGGAATCTACTCTTCAC 29165
||||||||| || ||||| |||||||| |||
Sbjct 10873 TTACAATATCCAAAAGGAGTCTACTCTGCAC 10843
>seq1584
Length=77134
Score = 96.9 bits (106), Expect = 3e-15
Identities = 148/211 (70%), Gaps = 0/211 (0%)
Strand=Plus/Minus
Query 28961 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 29020
|||| | || || | || || ||||| || |||||||| ||| || ||| | |
Sbjct 61731 AATGTAGATTTTTGTGAAGACTTTGACTGGAAAAACCATAACCTTGGAGGTTGAAAGCTC 61672
Query 29021 AGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 29080
||| || | | | || | ||| || || || || |||||| | || ||| ||
Sbjct 61671 AGACACTATTGACAATGTCAAGGCTAAGATACAAGACAAGGAAGGTATCCCACCAGACCA 61612
Query 29081 ACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAA 29140
|||||| |||||||||| || |||||||| |||||| | ||| | || ||||||||
Sbjct 61611 ACAAAGGGTTATCTTTGCAGGAAAACAACTTGAAGATGGAAGGACTCTTGCAGATTACAA 61552
Query 29141 TATTCAGAAGGAATCTACTCTTCACATGGTG 29171
||| |||||||| ||||| ||||| |||||
Sbjct 61551 TATCCAGAAGGAGTCTACCCTTCATCTGGTG 61521
>seq23762
Length=5545
Score = 93.3 bits (102), Expect = 4e-14
Identities = 143/204 (70%), Gaps = 0/204 (0%)
Strand=Plus/Plus
Query 28961 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 29020
|||||| || || | || || ||||| || |||||||| ||| || ||| | |
Sbjct 880 AATGCAGATTTTTGTGAAGACTTTGACTGGAAAAACCATAACCTTGGAGGTTGAAAGCTC 939
Query 29021 AGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 29080
||| || | | | || | ||| || || || || |||||| | || |||| ||
Sbjct 940 AGACACTATTGACAATGTCAAGGCCAAGATACAAGACAAGGAAGGTATCCCACTAGACCA 999
Query 29081 ACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAA 29140
|||||| ||||||||||| || | ||||| |||||| | ||| | || ||||||||
Sbjct 1000 ACAAAGGCTTATCTTTGCAGGAACGCAACTTGAAGATGGAAGGACTCTTGCAGATTACAA 1059
Query 29141 TATTCAGAAGGAATCTACTCTTCA 29164
||| || ||||| ||||| |||||
Sbjct 1060 TATCCAAAAGGAGTCTACCCTTCA 1083
>seq3871
Length=46552
Score = 91.5 bits (100), Expect = 1e-13
Identities = 148/213 (69%), Gaps = 0/213 (0%)
Strand=Plus/Plus
Query 28961 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 29020
|||||| || || | || || ||||| || |||||||| ||| || ||| | |
Sbjct 27095 AATGCAGATTTTTGTGAAGACTTTGACTGGAAAAACCATAACCTTGGAGGTTGAAAGCTC 27154
Query 29021 AGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 29080
|| || | | | || | ||| || || || || |||||| | || |||| ||
Sbjct 27155 AGGCACTATTGACAATGTCAAGGCTAAGATACAAGACAAGGAAGGTATCCCACTAGACCA 27214
Query 29081 ACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAA 29140
|||||| |||||||||| || || ||||| |||||| | ||| | | ||||||||
Sbjct 27215 ACAAAGGCTTATCTTTGTAGGAAAGCAACTTGAAGATGGAAGGACTCTTGTAGATTACAA 27274
Query 29141 TATTCAGAAGGAATCTACTCTTCACATGGTGTT 29173
||| || ||||| ||||| ||||| |||||||
Sbjct 27275 TATCCAAAAGGAGTCTACCCTTCATCTGGTGTT 27307
>seq13269
Length=14915
Score = 86.0 bits (94), Expect = 5e-12
Identities = 91/120 (76%), Gaps = 0/120 (0%)
Strand=Plus/Plus
Query 29046 AAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAA 29105
|||||| || |||||||| | ||| |||||| || || || || || || || ||
Sbjct 13522 AAAATTCAGGACAAAGAAGGAATTCCCCCAGATCAGCAGAGGCTGATTTTCGCTGGAAAG 13581
Query 29106 CAACTGGAAGATTCCAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCAC 29165
|| || || ||| | |||| ||||||||||||| ||||||||||||||||| || |||
Sbjct 13582 CAGCTTGAGGATGGCCGAACTTTGGCCGATTACAACATTCAGAAGGAATCTACACTCCAC 13641
Score = 86.0 bits (94), Expect = 5e-12
Identities = 145/210 (69%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 28961 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 29020
||||||||| || | || || | || ||||| ||||| ||| || || | |
Sbjct 13893 AATGCAAATCTTTGTAAAGACCCTTACTGGCAAGACCATCACCCTTGAGGTCGAGAGCTC 13952
Query 29021 AGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 29080
|| || | | | || ||||| ||||||| |||||||||||| | || ||| ||
Sbjct 13953 TGATACAATTGACAATGTTAAGGCAAAAATTCAGGATAAAGAAGGTATTCCACCAGACCA 14012
Query 29081 ACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAA 29140
||| || || || || || || ||||| || || ||| || ||| |||| || || ||
Sbjct 14013 ACAGAGGCTGATATTCGCTGGAAAACAGCTCGAGGATGGCAGGACTTTGGCTGACTATAA 14072
Query 29141 TATTCAGAAGGAATCTACTCTTCACATGGT 29170
|| ||||| || ||||||||||| ||||
Sbjct 14073 CATCCAGAAAGAGTCTACTCTTCATTTGGT 14102
Score = 84.2 bits (92), Expect = 2e-11
Identities = 141/204 (69%), Gaps = 0/204 (0%)
Strand=Plus/Plus
Query 28961 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 29020
|||||| || || |||| || |||| || || ||||| ||| || ||| | |
Sbjct 14121 AATGCAGATTTTTGTCAAGACTCTGACTGGAAAGACCATCACCCTTGAGGTGGAGAGCTC 14180
Query 29021 AGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 29080
|| || | | || |||| ||| ||| ||||| ||||| | || |||||
Sbjct 14181 TGATACCATAGATAATGTTAAAGCAAAGATTCAAGATAAGGAAGGGATTCCTCCGGATCA 14240
Query 29081 ACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAA 29140
|| || || |||||||| || |||||||| || ||| | ||| |||| ||||||||
Sbjct 14241 GCAGAGGCTCATCTTTGCTGGAAAACAACTTGAGGATGGCCGCACTCTGGCTGATTACAA 14300
Query 29141 TATTCAGAAGGAATCTACTCTTCA 29164
||||||||||||||| || || ||
Sbjct 14301 TATTCAGAAGGAATCAACACTCCA 14324
>seq1750
Length=74028
Score = 82.4 bits (90), Expect = 7e-11
Identities = 90/120 (75%), Gaps = 0/120 (0%)
Strand=Plus/Plus
Query 29046 AAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAA 29105
|||||| || |||||||| | ||| |||||| || || | || ||||| || ||
Sbjct 61866 AAAATTCAGGACAAAGAAGGCATTCCCCCAGATCAGCAGAGGTTGATTTTTGCTGGAAAG 61925
Query 29106 CAACTGGAAGATTCCAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCAC 29165
||||| || ||| | |||| |||||||||| || ||||||||||| ||||| || |||
Sbjct 61926 CAACTTGAGGATGGCCGAACTCTGGCCGATTATAACATTCAGAAGGAGTCTACACTCCAC 61985
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 427638619331795
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |