Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Castanea_20mollissima_20[genbank_20GCA_5F000763605.1_202014-10-06] 133,589 sequences; 833,240,550 total letters Query= NC_001623.1 Length=133894 Score E Sequences producing significant alignments: (Bits) Value seq16751 102 7e-17 seq10846 102 7e-17 seq1584 96.9 3e-15 seq23762 93.3 4e-14 seq3871 91.5 1e-13 seq13269 86.0 5e-12 seq1750 82.4 7e-11 >seq16751 Length=10463 Score = 102 bits (112), Expect = 7e-17 Identities = 149/211 (71%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 28961 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 29020 |||||| || || | || || ||||| || |||||||| ||| || ||| | | Sbjct 6292 AATGCAGATTTTTGTGAAGACTTTGACCGGAAAAACCATAACCTTGGAGGTTGAAAGCTC 6233 Query 29021 AGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 29080 ||| || | | | || | ||| || || || || |||||| | || ||| || Sbjct 6232 AGACACTATTGACAATGTCAAGGCTAAGATACAAGACAAGGAAGGTATCCCACCAGACCA 6173 Query 29081 ACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAA 29140 |||||| ||||||||||| || || ||||| |||||| | ||| | || |||||||| Sbjct 6172 ACAAAGGCTTATCTTTGCAGGAAAGCAACTTGAAGATGGAAGGACTCTTGCAGATTACAA 6113 Query 29141 TATTCAGAAGGAATCTACTCTTCACATGGTG 29171 ||| |||||||| ||||| ||||| ||||| Sbjct 6112 TATCCAGAAGGAGTCTACCCTTCATCTGGTG 6082 >seq10846 Length=19378 Score = 102 bits (112), Expect = 7e-17 Identities = 149/211 (71%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 28961 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 29020 |||||| || ||| | || || ||||| || |||||||| ||| || ||| | | Sbjct 11275 AATGCAGATTTTCGTGAAGACTTTGACTGGGAAAACCATAACCTTGGAGGTTGAAAGCTC 11216 Query 29021 AGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 29080 ||| || | | | || | ||| ||| || || || |||||| | || ||| || Sbjct 11215 AGATACTATTGACAATGTGAAGGCAAAGATACAAGACAAGGAAGGTATACCACCAGACCA 11156 Query 29081 ACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAA 29140 ||||| ||||| ||||| ||||| || || |||||| | ||| | || |||||||| Sbjct 11155 GCAAAGGCTTATTTTTGCAGGCAAGCAGCTTGAAGATGGAAGGACTCTTGCAGATTACAA 11096 Query 29141 TATTCAGAAGGAATCTACTCTTCACATGGTG 29171 ||| |||||||| ||||| ||||| ||||| Sbjct 11095 TATACAGAAGGAGTCTACCCTTCATCTGGTG 11065 Score = 84.2 bits (92), Expect = 2e-11 Identities = 73/91 (80%), Gaps = 0/91 (0%) Strand=Plus/Minus Query 29075 AGATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGA 29134 |||||| || || ||||| ||||| |||||||| || |||||| | ||| |||| || Sbjct 10933 AGATCAGCAGAGGCTTATTTTTGCAGGCAAACAGCTTGAAGATGGAAGGACTCTGGCTGA 10874 Query 29135 TTACAATATTCAGAAGGAATCTACTCTTCAC 29165 ||||||||| || ||||| |||||||| ||| Sbjct 10873 TTACAATATCCAAAAGGAGTCTACTCTGCAC 10843 >seq1584 Length=77134 Score = 96.9 bits (106), Expect = 3e-15 Identities = 148/211 (70%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 28961 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 29020 |||| | || || | || || ||||| || |||||||| ||| || ||| | | Sbjct 61731 AATGTAGATTTTTGTGAAGACTTTGACTGGAAAAACCATAACCTTGGAGGTTGAAAGCTC 61672 Query 29021 AGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 29080 ||| || | | | || | ||| || || || || |||||| | || ||| || Sbjct 61671 AGACACTATTGACAATGTCAAGGCTAAGATACAAGACAAGGAAGGTATCCCACCAGACCA 61612 Query 29081 ACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAA 29140 |||||| |||||||||| || |||||||| |||||| | ||| | || |||||||| Sbjct 61611 ACAAAGGGTTATCTTTGCAGGAAAACAACTTGAAGATGGAAGGACTCTTGCAGATTACAA 61552 Query 29141 TATTCAGAAGGAATCTACTCTTCACATGGTG 29171 ||| |||||||| ||||| ||||| ||||| Sbjct 61551 TATCCAGAAGGAGTCTACCCTTCATCTGGTG 61521 >seq23762 Length=5545 Score = 93.3 bits (102), Expect = 4e-14 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 28961 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 29020 |||||| || || | || || ||||| || |||||||| ||| || ||| | | Sbjct 880 AATGCAGATTTTTGTGAAGACTTTGACTGGAAAAACCATAACCTTGGAGGTTGAAAGCTC 939 Query 29021 AGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 29080 ||| || | | | || | ||| || || || || |||||| | || |||| || Sbjct 940 AGACACTATTGACAATGTCAAGGCCAAGATACAAGACAAGGAAGGTATCCCACTAGACCA 999 Query 29081 ACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAA 29140 |||||| ||||||||||| || | ||||| |||||| | ||| | || |||||||| Sbjct 1000 ACAAAGGCTTATCTTTGCAGGAACGCAACTTGAAGATGGAAGGACTCTTGCAGATTACAA 1059 Query 29141 TATTCAGAAGGAATCTACTCTTCA 29164 ||| || ||||| ||||| ||||| Sbjct 1060 TATCCAAAAGGAGTCTACCCTTCA 1083 >seq3871 Length=46552 Score = 91.5 bits (100), Expect = 1e-13 Identities = 148/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 28961 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 29020 |||||| || || | || || ||||| || |||||||| ||| || ||| | | Sbjct 27095 AATGCAGATTTTTGTGAAGACTTTGACTGGAAAAACCATAACCTTGGAGGTTGAAAGCTC 27154 Query 29021 AGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 29080 || || | | | || | ||| || || || || |||||| | || |||| || Sbjct 27155 AGGCACTATTGACAATGTCAAGGCTAAGATACAAGACAAGGAAGGTATCCCACTAGACCA 27214 Query 29081 ACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAA 29140 |||||| |||||||||| || || ||||| |||||| | ||| | | |||||||| Sbjct 27215 ACAAAGGCTTATCTTTGTAGGAAAGCAACTTGAAGATGGAAGGACTCTTGTAGATTACAA 27274 Query 29141 TATTCAGAAGGAATCTACTCTTCACATGGTGTT 29173 ||| || ||||| ||||| ||||| ||||||| Sbjct 27275 TATCCAAAAGGAGTCTACCCTTCATCTGGTGTT 27307 >seq13269 Length=14915 Score = 86.0 bits (94), Expect = 5e-12 Identities = 91/120 (76%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 29046 AAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAA 29105 |||||| || |||||||| | ||| |||||| || || || || || || || || Sbjct 13522 AAAATTCAGGACAAAGAAGGAATTCCCCCAGATCAGCAGAGGCTGATTTTCGCTGGAAAG 13581 Query 29106 CAACTGGAAGATTCCAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCAC 29165 || || || ||| | |||| ||||||||||||| ||||||||||||||||| || ||| Sbjct 13582 CAGCTTGAGGATGGCCGAACTTTGGCCGATTACAACATTCAGAAGGAATCTACACTCCAC 13641 Score = 86.0 bits (94), Expect = 5e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 28961 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 29020 ||||||||| || | || || | || ||||| ||||| ||| || || | | Sbjct 13893 AATGCAAATCTTTGTAAAGACCCTTACTGGCAAGACCATCACCCTTGAGGTCGAGAGCTC 13952 Query 29021 AGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 29080 || || | | | || ||||| ||||||| |||||||||||| | || ||| || Sbjct 13953 TGATACAATTGACAATGTTAAGGCAAAAATTCAGGATAAAGAAGGTATTCCACCAGACCA 14012 Query 29081 ACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAA 29140 ||| || || || || || || ||||| || || ||| || ||| |||| || || || Sbjct 14013 ACAGAGGCTGATATTCGCTGGAAAACAGCTCGAGGATGGCAGGACTTTGGCTGACTATAA 14072 Query 29141 TATTCAGAAGGAATCTACTCTTCACATGGT 29170 || ||||| || ||||||||||| |||| Sbjct 14073 CATCCAGAAAGAGTCTACTCTTCATTTGGT 14102 Score = 84.2 bits (92), Expect = 2e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 28961 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 29020 |||||| || || |||| || |||| || || ||||| ||| || ||| | | Sbjct 14121 AATGCAGATTTTTGTCAAGACTCTGACTGGAAAGACCATCACCCTTGAGGTGGAGAGCTC 14180 Query 29021 AGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 29080 || || | | || |||| ||| ||| ||||| ||||| | || ||||| Sbjct 14181 TGATACCATAGATAATGTTAAAGCAAAGATTCAAGATAAGGAAGGGATTCCTCCGGATCA 14240 Query 29081 ACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAA 29140 || || || |||||||| || |||||||| || ||| | ||| |||| |||||||| Sbjct 14241 GCAGAGGCTCATCTTTGCTGGAAAACAACTTGAGGATGGCCGCACTCTGGCTGATTACAA 14300 Query 29141 TATTCAGAAGGAATCTACTCTTCA 29164 ||||||||||||||| || || || Sbjct 14301 TATTCAGAAGGAATCAACACTCCA 14324 >seq1750 Length=74028 Score = 82.4 bits (90), Expect = 7e-11 Identities = 90/120 (75%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 29046 AAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAA 29105 |||||| || |||||||| | ||| |||||| || || | || ||||| || || Sbjct 61866 AAAATTCAGGACAAAGAAGGCATTCCCCCAGATCAGCAGAGGTTGATTTTTGCTGGAAAG 61925 Query 29106 CAACTGGAAGATTCCAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCAC 29165 ||||| || ||| | |||| |||||||||| || ||||||||||| ||||| || ||| Sbjct 61926 CAACTTGAGGATGGCCGAACTCTGGCCGATTATAACATTCAGAAGGAGTCTACACTCCAC 61985 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427638619331795