Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Castanea_20mollissima_20[genbank_20GCA_5F000763605.1_202014-10-06] 133,589 sequences; 833,240,550 total letters Query= NC_001962.1 Length=128413 Score E Sequences producing significant alignments: (Bits) Value seq23762 98.7 8e-16 seq16751 96.9 3e-15 seq3871 96.9 3e-15 seq10846 93.3 3e-14 seq9176 93.3 3e-14 seq1584 93.3 3e-14 >seq23762 Length=5545 Score = 98.7 bits (108), Expect = 8e-16 Identities = 144/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 25034 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 25093 |||||| || || | || || ||||| || |||||||| ||| || ||| | | Sbjct 880 AATGCAGATTTTTGTGAAGACTTTGACTGGAAAAACCATAACCTTGGAGGTTGAAAGCTC 939 Query 25094 AGAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 25153 ||| || | | | || ||||| || || || || |||||| | || |||| || Sbjct 940 AGACACTATTGACAATGTCAAGGCCAAGATACAAGACAAGGAAGGTATCCCACTAGACCA 999 Query 25154 ACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAA 25213 |||||| ||||||||||| || | ||| | |||||| | ||| | || |||||||| Sbjct 1000 ACAAAGGCTTATCTTTGCAGGAACGCAACTTGAAGATGGAAGGACTCTTGCAGATTACAA 1059 Query 25214 TATTCAAAAGGAATCTACTCTTCA 25237 ||| |||||||| ||||| ||||| Sbjct 1060 TATCCAAAAGGAGTCTACCCTTCA 1083 >seq16751 Length=10463 Score = 96.9 bits (106), Expect = 3e-15 Identities = 148/211 (70%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 25034 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 25093 |||||| || || | || || ||||| || |||||||| ||| || ||| | | Sbjct 6292 AATGCAGATTTTTGTGAAGACTTTGACCGGAAAAACCATAACCTTGGAGGTTGAAAGCTC 6233 Query 25094 AGAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 25153 ||| || | | | || ||||| || || || || |||||| | || ||| || Sbjct 6232 AGACACTATTGACAATGTCAAGGCTAAGATACAAGACAAGGAAGGTATCCCACCAGACCA 6173 Query 25154 ACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAA 25213 |||||| ||||||||||| || || ||| | |||||| | ||| | || |||||||| Sbjct 6172 ACAAAGGCTTATCTTTGCAGGAAAGCAACTTGAAGATGGAAGGACTCTTGCAGATTACAA 6113 Query 25214 TATTCAAAAGGAATCTACTCTTCACATGGTG 25244 ||| || ||||| ||||| ||||| ||||| Sbjct 6112 TATCCAGAAGGAGTCTACCCTTCATCTGGTG 6082 Score = 84.2 bits (92), Expect = 2e-11 Identities = 87/114 (76%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 25148 AGATCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGA 25207 ||| ||||| || || || ||||| ||||| || ||||||||| | || | ||||| Sbjct 6406 AGACCAACAGAGGCTGATTTTTGCTGGCAAGCAGTTGGAAGATGGAAGGACCTTAGCCGA 6347 Query 25208 TTACAATATTCAAAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 25261 |||||||||||||||||| || || || ||| ||||| | || || || || || Sbjct 6346 TTACAATATTCAAAAGGAGTCAACCCTGCACTTGGTGCTGCGTTTGCGTGGTGG 6293 >seq3871 Length=46552 Score = 96.9 bits (106), Expect = 3e-15 Identities = 149/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 25034 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 25093 |||||| || || | || || ||||| || |||||||| ||| || ||| | | Sbjct 27095 AATGCAGATTTTTGTGAAGACTTTGACTGGAAAAACCATAACCTTGGAGGTTGAAAGCTC 27154 Query 25094 AGAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 25153 || || | | | || ||||| || || || || |||||| | || |||| || Sbjct 27155 AGGCACTATTGACAATGTCAAGGCTAAGATACAAGACAAGGAAGGTATCCCACTAGACCA 27214 Query 25154 ACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAA 25213 |||||| |||||||||| || || ||| | |||||| | ||| | | |||||||| Sbjct 27215 ACAAAGGCTTATCTTTGTAGGAAAGCAACTTGAAGATGGAAGGACTCTTGTAGATTACAA 27274 Query 25214 TATTCAAAAGGAATCTACTCTTCACATGGTGTT 25246 ||| |||||||| ||||| ||||| ||||||| Sbjct 27275 TATCCAAAAGGAGTCTACCCTTCATCTGGTGTT 27307 >seq10846 Length=19378 Score = 93.3 bits (102), Expect = 3e-14 Identities = 147/211 (70%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 25034 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 25093 |||||| || ||| | || || ||||| || |||||||| ||| || ||| | | Sbjct 11275 AATGCAGATTTTCGTGAAGACTTTGACTGGGAAAACCATAACCTTGGAGGTTGAAAGCTC 11216 Query 25094 AGAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 25153 ||| || | | | || | ||| ||| || || || |||||| | || ||| || Sbjct 11215 AGATACTATTGACAATGTGAAGGCAAAGATACAAGACAAGGAAGGTATACCACCAGACCA 11156 Query 25154 ACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAA 25213 ||||| ||||| ||||| ||||| || | |||||| | ||| | || |||||||| Sbjct 11155 GCAAAGGCTTATTTTTGCAGGCAAGCAGCTTGAAGATGGAAGGACTCTTGCAGATTACAA 11096 Query 25214 TATTCAAAAGGAATCTACTCTTCACATGGTG 25244 ||| || ||||| ||||| ||||| ||||| Sbjct 11095 TATACAGAAGGAGTCTACCCTTCATCTGGTG 11065 Score = 93.3 bits (102), Expect = 3e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 25128 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAA 25187 || ||||| ||| | || || ||||| || || || ||||| ||||| || |||||| Sbjct 11409 GACAAAGAGGGTATCCCACCGGACCAACAGAGGCTGATTTTTGCTGGCAAGCAGTTGGAA 11350 Query 25188 GATTCCAAAACTATGGCCGATTACAATATTCAAAAGGAATCTACTCTTCACATGGTGTTA 25247 ||| | ||| | || |||||||| ||||||||||| || || || ||| ||||| | Sbjct 11349 GATGGAAGAACCTTAGCTGATTACAACATTCAAAAGGAGTCGACCCTGCACTTGGTGCTG 11290 Query 25248 CGATTACGAGGAGG 25261 ||||| |||||||| Sbjct 11289 CGATTGCGAGGAGG 11276 Score = 84.2 bits (92), Expect = 2e-11 Identities = 73/91 (80%), Gaps = 0/91 (0%) Strand=Plus/Minus Query 25148 AGATCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGA 25207 |||||| || || ||||| ||||| |||||||| | |||||| | ||| |||| || Sbjct 10933 AGATCAGCAGAGGCTTATTTTTGCAGGCAAACAGCTTGAAGATGGAAGGACTCTGGCTGA 10874 Query 25208 TTACAATATTCAAAAGGAATCTACTCTTCAC 25238 ||||||||| |||||||| |||||||| ||| Sbjct 10873 TTACAATATCCAAAAGGAGTCTACTCTGCAC 10843 >seq9176 Length=23001 Score = 93.3 bits (102), Expect = 3e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 25128 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAA 25187 || || |||||| | ||| ||| ||||| || || || ||||| ||||| ||||||||| Sbjct 19880 GACAAGGAAGGTATCCCCCCAGACCAACAGAGGCTGATTTTTGCTGGCAAGCAATTGGAA 19939 Query 25188 GATTCCAAAACTATGGCCGATTACAATATTCAAAAGGAATCTACTCTTCACATGGTGTTA 25247 ||| |||| | || |||||||| || |||||||| || || |||||| |||| || Sbjct 19940 GATGGTCGAACTCTTGCTGATTACAACATCCAAAAGGAGTCGACACTTCACCTGGTTTTG 19999 Query 25248 CGATTACGAGGAGG 25261 || | || ||||| Sbjct 20000 AGACTTCGGGGAGG 20013 >seq1584 Length=77134 Score = 93.3 bits (102), Expect = 3e-14 Identities = 147/211 (70%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 25034 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 25093 |||| | || || | || || ||||| || |||||||| ||| || ||| | | Sbjct 61731 AATGTAGATTTTTGTGAAGACTTTGACTGGAAAAACCATAACCTTGGAGGTTGAAAGCTC 61672 Query 25094 AGAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 25153 ||| || | | | || ||||| || || || || |||||| | || ||| || Sbjct 61671 AGACACTATTGACAATGTCAAGGCTAAGATACAAGACAAGGAAGGTATCCCACCAGACCA 61612 Query 25154 ACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAA 25213 |||||| |||||||||| || |||||| | |||||| | ||| | || |||||||| Sbjct 61611 ACAAAGGGTTATCTTTGCAGGAAAACAACTTGAAGATGGAAGGACTCTTGCAGATTACAA 61552 Query 25214 TATTCAAAAGGAATCTACTCTTCACATGGTG 25244 ||| || ||||| ||||| ||||| ||||| Sbjct 61551 TATCCAGAAGGAGTCTACCCTTCATCTGGTG 61521 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 410127975182846