Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Castanea_20mollissima_20[genbank_20GCA_5F000763605.1_202014-10-06] 133,589 sequences; 833,240,550 total letters Query= NC_002484.2 Length=56426 Score E Sequences producing significant alignments: (Bits) Value seq112858 91.5 5e-14 seq99257 80.6 1e-10 >seq112858 Length=569 Score = 91.5 bits (100), Expect = 5e-14 Identities = 107/145 (74%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 48914 TGAAGCTGTTGGCCAGGGAGATCGGATGCCCGGTGCTCCCGCTCTGCCAGCTCAACCGCG 48973 |||||||| | || | |||| |||| ||||| || |||| | ||||| ||||| | Sbjct 483 TGAAGCTGCTCGCGAAGGAGCTCGGCGTGCCGGTCATCGCGCTGTCGCAGCTGAACCGAG 424 Query 48974 GATGTGAGTCTCGCCCGGATAAGCGCCCGGTGCTCAGCGACCTACGCGAGTCCGGCGCCA 49033 | | ||| ||| |||| ||||| || | | || |||||| |||||||| || | | Sbjct 423 GGTCGGAGCAGCGCGCGGACAAGCGGCCCGCGATCTCCGACCTCCGCGAGTCGGGGTCGA 364 Query 49034 TCGAGCAAGACGCGGACATCGTGAT 49058 ||||||| ||||| ||||||||||| Sbjct 363 TCGAGCAGGACGCCGACATCGTGAT 339 >seq99257 Length=723 Score = 80.6 bits (88), Expect = 1e-10 Identities = 70/87 (80%), Gaps = 0/87 (0%) Strand=Plus/Minus Query 48991 GATAAGCGCCCGGTGCTCAGCGACCTACGCGAGTCCGGCGCCATCGAGCAAGACGCGGAC 49050 || ||||||||| |||| ||||| ||||| || ||| | |||||||| ||||| ||| Sbjct 607 GACAAGCGCCCGCAGCTCTCGGACCTGCGCGAATCGGGCTCGATCGAGCAGGACGCCGAC 548 Query 49051 ATCGTGATGTTCGTGTACCGCGATGAA 49077 | ||||||||||||| |||||| ||| Sbjct 547 GTGGTGATGTTCGTGTTCCGCGAGGAA 521 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 180155352971784