Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Castanea_20mollissima_20[genbank_20GCA_5F000763605.1_202014-10-06] 133,589 sequences; 833,240,550 total letters Query= NC_002520.1 Length=232392 Score E Sequences producing significant alignments: (Bits) Value seq58530 91.5 2e-13 seq13269 89.7 8e-13 seq1750 89.7 8e-13 seq58168 87.8 3e-12 seq12926 86.0 9e-12 seq124414 84.2 3e-11 >seq58530 Length=1747 Score = 91.5 bits (100), Expect = 2e-13 Identities = 81/100 (81%), Gaps = 1/100 (1%) Strand=Plus/Minus Query 146088 CTTTAGATATATTATAATCTGAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAA 146147 |||| || || |||||||| | ||||| || | ||| || ||||| || |||||||| | Sbjct 277 CTTTTGA-ATGTTATAATCAGCGAGAGTCCTCCCATCCTCCAATTGCTTCCCAGCAAAGA 219 Query 146148 TCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATCTTG 146187 ||| ||| |||||||||||||| ||||| || |||||||| Sbjct 218 TCAGTCTCTGCTGATCCGGAGGGATTCCCTCCTTATCTTG 179 >seq13269 Length=14915 Score = 89.7 bits (98), Expect = 8e-13 Identities = 75/92 (82%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 146096 ATATTATAATCTGAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTT 146155 ||||| ||||| | ||||| | || ||| || | ||||||||||||||| || | || Sbjct 14303 ATATTGTAATCAGCCAGAGTGCGGCCATCCTCAAGTTGTTTTCCAGCAAAGATGAGCCTC 14244 Query 146156 TGCTGATCCGGAGGAATTCCTTCTTTATCTTG 146187 ||||||||||||||||| ||||| |||||||| Sbjct 14243 TGCTGATCCGGAGGAATCCCTTCCTTATCTTG 14212 Score = 84.2 bits (92), Expect = 3e-11 Identities = 102/139 (73%), Gaps = 0/139 (0%) Strand=Plus/Minus Query 146049 TTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTG 146108 |||| || | ||| || | |||||||| | |||||| ||||| || ||||| || | Sbjct 14122 TTCCTCCACGAAGCCTGAGAACCAAATGAAGAGTAGACTCTTTCTGGATGTTATAGTCAG 14063 Query 146109 AAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAG 146168 | ||| |||| ||| || | ||||||||||| || |||| || || || || || | Sbjct 14062 CCAAAGTCCTGCCATCCTCGAGCTGTTTTCCAGCGAATATCAGCCTCTGTTGGTCTGGTG 14003 Query 146169 GAATTCCTTCTTTATCTTG 146187 |||| ||||||||||| || Sbjct 14002 GAATACCTTCTTTATCCTG 13984 >seq1750 Length=74028 Score = 89.7 bits (98), Expect = 8e-13 Identities = 75/92 (82%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 146096 ATATTATAATCTGAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTT 146155 || |||||||| | ||||||| || ||| || | ||| ||||||||||||||||| || Sbjct 61963 ATGTTATAATCGGCCAGAGTTCGGCCATCCTCAAGTTGCTTTCCAGCAAAAATCAACCTC 61904 Query 146156 TGCTGATCCGGAGGAATTCCTTCTTTATCTTG 146187 |||||||| || ||||| |||||||| || || Sbjct 61903 TGCTGATCTGGGGGAATGCCTTCTTTGTCCTG 61872 >seq58168 Length=1766 Score = 87.8 bits (96), Expect = 3e-12 Identities = 80/100 (80%), Gaps = 1/100 (1%) Strand=Plus/Minus Query 146088 CTTTAGATATATTATAATCTGAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAA 146147 |||| || || |||||||| | || || || | ||| || ||||| || |||||||| | Sbjct 610 CTTTTGA-ATGTTATAATCAGCTAGCGTCCTCCCATCCTCCAATTGCTTCCCAGCAAAGA 552 Query 146148 TCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATCTTG 146187 ||| |||||||||||||| |||||||| || |||||||| Sbjct 551 TCAGCCTTTGCTGATCCGGTGGAATTCCCTCCTTATCTTG 512 >seq12926 Length=15191 Score = 86.0 bits (94), Expect = 9e-12 Identities = 74/92 (80%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 146096 ATATTATAATCTGAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTT 146155 || |||||||| | ||||| || | ||| || ||||| || |||||||| |||| || Sbjct 114 ATGTTATAATCAGCGAGAGTCCTCCCATCCTCCAATTGCTTCCCAGCAAAGATCAGCCTC 173 Query 146156 TGCTGATCCGGAGGAATTCCTTCTTTATCTTG 146187 |||||||||||||| ||||| || |||||||| Sbjct 174 TGCTGATCCGGAGGGATTCCCTCCTTATCTTG 205 >seq124414 Length=715 Score = 84.2 bits (92), Expect = 3e-11 Identities = 90/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 146069 ACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAAAGAGTTCTGCTATCATCT 146128 ||||| || | ||||| ||||| ||||| || || | |||||||| | ||| || Sbjct 306 ACCAAGTGGAGGGTAGACTCTTTCTGGATATTGTAGTCGGCAAGAGTTCGACCATCTTCC 365 Query 146129 AATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATCTTG 146187 |||||||| ||||| ||||| | ||||||||||| || || |||||||| || || || Sbjct 366 AATTGTTTACCAGCGAAAATGAGCCTTTGCTGATCTGGTGGGATTCCTTCCTTGTCCTG 424 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 742284813146880