Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Castanea_20mollissima_20[genbank_20GCA_5F000763605.1_202014-10-06] 133,589 sequences; 833,240,550 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq99200 113 4e-20 >seq99200 Length=725 Score = 113 bits (124), Expect = 4e-20 Identities = 328/499 (66%), Gaps = 7/499 (1%) Strand=Plus/Plus Query 16250 TGCAATCCTTCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGACCTGGCATTAGTCCT 16309 |||| ||||| || | | || | |||||| || ||||| ||||| ||||| || ||| Sbjct 229 TGCATACCTTCATCACGAGAGATCAGCTCGTTGGAGAATGTCAGACCAGGCATGAGACCT 288 Query 16310 CGTTTTTTAATCCAAAATATAGCGGCAAATGAACCAGAAAAGAATATACCTTCAACTGCG 16369 | || || | ||| || || | ||| || || || || ||||| || || ||||| ||| Sbjct 289 CTCTTCTTGAGCCAGAAAATGGAGGCGAAAGACCCGGAGAAGAAGATGCCCTCAACGGCG 348 Query 16370 GCAAATGCAACCAATCGCTCACCGTACGTTCTAtttttactttctatccattttttagcc 16429 || ||||| |||| || | || | | || | ||| |||||| | ||| Sbjct 349 GCGAATGCCACCAGACGTTGGGCGAAACTGCTTTCCTTATCAGAGATCCATCTCAACGCC 408 Query 16430 caatttgctttttgtttAACACAGTTCATGTTCTCTATTGCATTAAATAAATAAtttttt 16489 || | || || | | || || | || || |||| || | || | ||| Sbjct 409 CACTCAGCCTTCTTGCGGATGCATGGAATAGTGTCGATAGCATCGAAGAGGTACTGTTTC 468 Query 16490 t-CTTTG-CTATCTAAAATATAAGTATCTATTAGTAAACTATACATTTCTGAATGAATAT 16547 | ||||| || | | | | || ||||| || || || || |||||||| || || |||| Sbjct 469 TGCTTTGGCTCTTTCACAAAT--GTATCAATGAGCAAGCTGTACATTTCGGAGTGGATAT 526 Query 16548 TCTCCATTGCTATCTGAAAACCATAAAAGCATCTAGCTTCGGATATTTGTACTTCAGAGT 16607 ||||||| ||||| |||||||||||||||| ||| || | || ||| || ||| Sbjct 527 TCTCCATCATGATCTGGAAACCATAAAAGCATCGAGCCTCTGGTACTTGCACCTCACCCG 586 Query 16608 AAAACCTTTCTGCTAAGTTTTCGTTAACTATTCCATCGCTAGCTGCAAAAAACGCAAGTA 16667 | || || || | | ||| ||||| || || || || || || || || ||||| | Sbjct 587 AGAATCTCTCGACAAGGTTCTCGTTGACAATACCGTCAGAGGCAGCGAAGAAAGCAAGGA 646 Query 16668 TGTGTTTAATAAAAtttttttCGTTATC--TGAAAGT-TTTAACCAGTCAGAAAAATCTT 16724 |||| ||||| | | | || | || ||| | || |||||| | ||||| Sbjct 647 CGTGTGAGATAAAGTATCTCTCATCGTCGTTGAGCTTGTTGTGCCAGTCGTGCATATCTT 706 Query 16725 TTGATAAATCGACCTCTTC 16743 |||| | ||| |||||||| Sbjct 707 TTGAGAGATCCACCTCTTC 725 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 461739668555400