Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Castanea_20mollissima_20[genbank_20GCA_5F000763605.1_202014-10-06]
133,589 sequences; 833,240,550 total letters
Query= NC_002642.1
Length=144575
Score E
Sequences producing significant alignments: (Bits) Value
seq99200 113 4e-20
>seq99200
Length=725
Score = 113 bits (124), Expect = 4e-20
Identities = 328/499 (66%), Gaps = 7/499 (1%)
Strand=Plus/Plus
Query 16250 TGCAATCCTTCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGACCTGGCATTAGTCCT 16309
|||| ||||| || | | || | |||||| || ||||| ||||| ||||| || |||
Sbjct 229 TGCATACCTTCATCACGAGAGATCAGCTCGTTGGAGAATGTCAGACCAGGCATGAGACCT 288
Query 16310 CGTTTTTTAATCCAAAATATAGCGGCAAATGAACCAGAAAAGAATATACCTTCAACTGCG 16369
| || || | ||| || || | ||| || || || || ||||| || || ||||| |||
Sbjct 289 CTCTTCTTGAGCCAGAAAATGGAGGCGAAAGACCCGGAGAAGAAGATGCCCTCAACGGCG 348
Query 16370 GCAAATGCAACCAATCGCTCACCGTACGTTCTAtttttactttctatccattttttagcc 16429
|| ||||| |||| || | || | | || | ||| |||||| | |||
Sbjct 349 GCGAATGCCACCAGACGTTGGGCGAAACTGCTTTCCTTATCAGAGATCCATCTCAACGCC 408
Query 16430 caatttgctttttgtttAACACAGTTCATGTTCTCTATTGCATTAAATAAATAAtttttt 16489
|| | || || | | || || | || || |||| || | || | |||
Sbjct 409 CACTCAGCCTTCTTGCGGATGCATGGAATAGTGTCGATAGCATCGAAGAGGTACTGTTTC 468
Query 16490 t-CTTTG-CTATCTAAAATATAAGTATCTATTAGTAAACTATACATTTCTGAATGAATAT 16547
| ||||| || | | | | || ||||| || || || || |||||||| || || ||||
Sbjct 469 TGCTTTGGCTCTTTCACAAAT--GTATCAATGAGCAAGCTGTACATTTCGGAGTGGATAT 526
Query 16548 TCTCCATTGCTATCTGAAAACCATAAAAGCATCTAGCTTCGGATATTTGTACTTCAGAGT 16607
||||||| ||||| |||||||||||||||| ||| || | || ||| || |||
Sbjct 527 TCTCCATCATGATCTGGAAACCATAAAAGCATCGAGCCTCTGGTACTTGCACCTCACCCG 586
Query 16608 AAAACCTTTCTGCTAAGTTTTCGTTAACTATTCCATCGCTAGCTGCAAAAAACGCAAGTA 16667
| || || || | | ||| ||||| || || || || || || || || ||||| |
Sbjct 587 AGAATCTCTCGACAAGGTTCTCGTTGACAATACCGTCAGAGGCAGCGAAGAAAGCAAGGA 646
Query 16668 TGTGTTTAATAAAAtttttttCGTTATC--TGAAAGT-TTTAACCAGTCAGAAAAATCTT 16724
|||| ||||| | | | || | || ||| | || |||||| | |||||
Sbjct 647 CGTGTGAGATAAAGTATCTCTCATCGTCGTTGAGCTTGTTGTGCCAGTCGTGCATATCTT 706
Query 16725 TTGATAAATCGACCTCTTC 16743
|||| | ||| ||||||||
Sbjct 707 TTGAGAGATCCACCTCTTC 725
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 461739668555400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |