Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Castanea_20mollissima_20[genbank_20GCA_5F000763605.1_202014-10-06]
133,589 sequences; 833,240,550 total letters
Query= NC_002686.2
Length=124784
Score E
Sequences producing significant alignments: (Bits) Value
seq4815 91.5 1e-13
seq3602 82.4 6e-11
>seq4815
Length=40193
Score = 91.5 bits (100), Expect = 1e-13
Identities = 94/123 (76%), Gaps = 0/123 (0%)
Strand=Plus/Minus
Query 20431 CAATTTTACGTTGCTAATAATGAATTGTCGTGTCAAATGTATCAACGATCCGCTGATATG 20490
|| ||||| || || ||| ||| || || |||||||||||||| || || ||||| |||
Sbjct 28564 CAGTTTTATGTGGCCAATGGTGAGTTATCATGTCAAATGTATCAGCGCTCTGCTGACATG 28505
Query 20491 GGACTGGGTGTTCCTTTCAATATTGCAAGTTATGCGCTGCTTACGTATATGATTGCACAT 20550
|| || ||||| || ||||| || ||| |||| | || || || | |||||||| |||
Sbjct 28504 GGCCTCGGTGTGCCATTCAACATCGCATCTTATTCTCTCCTGACATGCATGATTGCTCAT 28445
Query 20551 GTT 20553
|||
Sbjct 28444 GTT 28442
>seq3602
Length=49096
Score = 82.4 bits (90), Expect = 6e-11
Identities = 92/123 (75%), Gaps = 0/123 (0%)
Strand=Plus/Plus
Query 20431 CAATTTTACGTTGCTAATAATGAATTGTCGTGTCAAATGTATCAACGATCCGCTGATATG 20490
|| ||||| || || ||| || | || |||||||||||||| || || |||||||
Sbjct 5906 CAGTTTTATGTAGCCAATGGGGAGCTATCCTGTCAAATGTATCAGCGGTCTGCTGATACA 5965
Query 20491 GGACTGGGTGTTCCTTTCAATATTGCAAGTTATGCGCTGCTTACGTATATGATTGCACAT 20550
|| || |||||||| || ||| ||||| |||||| | | |||| ||||||||| ||
Sbjct 5966 GGTCTTGGTGTTCCATTTAATGTTGCATCTTATGCATTATTGACGTGTATGATTGCTCAA 6025
Query 20551 GTT 20553
|||
Sbjct 6026 GTT 6028
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 398534082167605
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |