Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Castanea_20mollissima_20[genbank_20GCA_5F000763605.1_202014-10-06] 133,589 sequences; 833,240,550 total letters Query= NC_002686.2 Length=124784 Score E Sequences producing significant alignments: (Bits) Value seq4815 91.5 1e-13 seq3602 82.4 6e-11 >seq4815 Length=40193 Score = 91.5 bits (100), Expect = 1e-13 Identities = 94/123 (76%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 20431 CAATTTTACGTTGCTAATAATGAATTGTCGTGTCAAATGTATCAACGATCCGCTGATATG 20490 || ||||| || || ||| ||| || || |||||||||||||| || || ||||| ||| Sbjct 28564 CAGTTTTATGTGGCCAATGGTGAGTTATCATGTCAAATGTATCAGCGCTCTGCTGACATG 28505 Query 20491 GGACTGGGTGTTCCTTTCAATATTGCAAGTTATGCGCTGCTTACGTATATGATTGCACAT 20550 || || ||||| || ||||| || ||| |||| | || || || | |||||||| ||| Sbjct 28504 GGCCTCGGTGTGCCATTCAACATCGCATCTTATTCTCTCCTGACATGCATGATTGCTCAT 28445 Query 20551 GTT 20553 ||| Sbjct 28444 GTT 28442 >seq3602 Length=49096 Score = 82.4 bits (90), Expect = 6e-11 Identities = 92/123 (75%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 20431 CAATTTTACGTTGCTAATAATGAATTGTCGTGTCAAATGTATCAACGATCCGCTGATATG 20490 || ||||| || || ||| || | || |||||||||||||| || || ||||||| Sbjct 5906 CAGTTTTATGTAGCCAATGGGGAGCTATCCTGTCAAATGTATCAGCGGTCTGCTGATACA 5965 Query 20491 GGACTGGGTGTTCCTTTCAATATTGCAAGTTATGCGCTGCTTACGTATATGATTGCACAT 20550 || || |||||||| || ||| ||||| |||||| | | |||| ||||||||| || Sbjct 5966 GGTCTTGGTGTTCCATTTAATGTTGCATCTTATGCATTATTGACGTGTATGATTGCTCAA 6025 Query 20551 GTT 20553 ||| Sbjct 6026 GTT 6028 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 398534082167605