Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Castanea_20mollissima_20[genbank_20GCA_5F000763605.1_202014-10-06] 133,589 sequences; 833,240,550 total letters Query= NC_003027.1 Length=150773 Score E Sequences producing significant alignments: (Bits) Value seq99200 120 3e-22 seq9621 95.1 1e-14 >seq99200 Length=725 Score = 120 bits (132), Expect = 3e-22 Identities = 318/479 (66%), Gaps = 9/479 (2%) Strand=Plus/Plus Query 14240 ATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATT 14299 || || ||||| || ||||| | || ||||| | |||| || || | ||| || || Sbjct 250 ATCAGCTCGTTGGAGAATGTCAGACCAGGCATGAGACCTCTCTTCTTGAGCCAGAAAATG 309 Query 14300 GCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCT 14359 | ||||| || ||||| ||||| || |||||||| || || || || | | |||| Sbjct 310 GAGGCGAAAGACCCGGAGAAGAAGATGCCCTCAACGGCGGCGAATGCCACCAGACGTTGG 369 Query 14360 CC-AAACGATGCTTTTTTGTTC-GATATCCATTTTCTAGCCCATTCAGAtttttttttAA 14417 | |||| |||||| | || || |||||| | ||||| |||| || || | Sbjct 370 GCGAAAC--TGCTTTCCTTATCAGAGATCCATCTCAACGCCCACTCAGCCTTCTTGCGGA 427 Query 14418 TAAAATCCATTGTTTCAATAGCATTAAATAAATGTTCCTTCT-CTTTAGTACTTGAAATG 14476 | | || || || ||||||| || | | | |||| |||| | ||| | Sbjct 428 TGCATGGAATAGTGTCGATAGCATCGAAGAGGTACTGTTTCTGCTTTGGCTCTTTCACAA 487 Query 14477 TATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAA 14536 |||||||||| || ||||| |||||||| ||||| || || ||||| ||||| ||| Sbjct 488 -ATGTATCAATGAGCAAGCTGTACATTTCGGAGTGGATATTCTCCATCATGATCTGGAAA 546 Query 14537 CCATAAAAACATCTAGCTTCTGACCATTGTACCTCTGAGTAAAATCTTTCGGCCAAATTT 14596 |||||||| |||| ||| |||| ||| ||||| | ||||| ||| | | || Sbjct 547 CCATAAAAGCATCGAGCCTCTGGTACTTGCACCTCACCCGAGAATCTCTCGACAAGGTTC 606 Query 14597 TCATTAACTATACCATCACTAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGC 14656 || || || ||||| ||| || || || || || | | || | ||||||||| | Sbjct 607 TCGTTGACAATACCGTCAGAGGCAGCGAAGAAAGCAAGGACGTGTGAGATAAAGTATCTC 666 Query 14657 TCTTCATTGCTGAGTTTTTT---CCAATCGGCTAAATCCTTAGAAAGATCTACTTCATC 14712 || || | | |||| || || ||| ||| | ||| || || ||||| || || || Sbjct 667 TCATCGTCGTTGAGCTTGTTGTGCCAGTCGTGCATATCTTTTGAGAGATCCACCTCTTC 725 >seq9621 Length=23181 Score = 95.1 bits (104), Expect = 1e-14 Identities = 78/95 (82%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 14204 CACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAAT 14263 || ||||| |||||||| ||||||||||||||| |||||| || ||||| ||||| || Sbjct 8835 CAAGCAAAGTCACAATGGAGGCCCTCATCTCTAGAAATAAGCTCATTTGAGAATGTCAAG 8894 Query 14264 CCTGGCATCAATCCTCGtttttttAACCAAAATAT 14298 |||||||||| ||| | ||||| | ||| ||||| Sbjct 8895 CCTGGCATCATTCCCCTCTTTTTAAGCCAGAATAT 8929 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 481540149170520