Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Castanea_20mollissima_20[genbank_20GCA_5F000763605.1_202014-10-06]
133,589 sequences; 833,240,550 total letters
Query= NC_003027.1
Length=150773
Score E
Sequences producing significant alignments: (Bits) Value
seq99200 120 3e-22
seq9621 95.1 1e-14
>seq99200
Length=725
Score = 120 bits (132), Expect = 3e-22
Identities = 318/479 (66%), Gaps = 9/479 (2%)
Strand=Plus/Plus
Query 14240 ATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATT 14299
|| || ||||| || ||||| | || ||||| | |||| || || | ||| || ||
Sbjct 250 ATCAGCTCGTTGGAGAATGTCAGACCAGGCATGAGACCTCTCTTCTTGAGCCAGAAAATG 309
Query 14300 GCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCT 14359
| ||||| || ||||| ||||| || |||||||| || || || || | | ||||
Sbjct 310 GAGGCGAAAGACCCGGAGAAGAAGATGCCCTCAACGGCGGCGAATGCCACCAGACGTTGG 369
Query 14360 CC-AAACGATGCTTTTTTGTTC-GATATCCATTTTCTAGCCCATTCAGAtttttttttAA 14417
| |||| |||||| | || || |||||| | ||||| |||| || || |
Sbjct 370 GCGAAAC--TGCTTTCCTTATCAGAGATCCATCTCAACGCCCACTCAGCCTTCTTGCGGA 427
Query 14418 TAAAATCCATTGTTTCAATAGCATTAAATAAATGTTCCTTCT-CTTTAGTACTTGAAATG 14476
| | || || || ||||||| || | | | |||| |||| | ||| |
Sbjct 428 TGCATGGAATAGTGTCGATAGCATCGAAGAGGTACTGTTTCTGCTTTGGCTCTTTCACAA 487
Query 14477 TATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAA 14536
|||||||||| || ||||| |||||||| ||||| || || ||||| ||||| |||
Sbjct 488 -ATGTATCAATGAGCAAGCTGTACATTTCGGAGTGGATATTCTCCATCATGATCTGGAAA 546
Query 14537 CCATAAAAACATCTAGCTTCTGACCATTGTACCTCTGAGTAAAATCTTTCGGCCAAATTT 14596
|||||||| |||| ||| |||| ||| ||||| | ||||| ||| | | ||
Sbjct 547 CCATAAAAGCATCGAGCCTCTGGTACTTGCACCTCACCCGAGAATCTCTCGACAAGGTTC 606
Query 14597 TCATTAACTATACCATCACTAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGC 14656
|| || || ||||| ||| || || || || || | | || | ||||||||| |
Sbjct 607 TCGTTGACAATACCGTCAGAGGCAGCGAAGAAAGCAAGGACGTGTGAGATAAAGTATCTC 666
Query 14657 TCTTCATTGCTGAGTTTTTT---CCAATCGGCTAAATCCTTAGAAAGATCTACTTCATC 14712
|| || | | |||| || || ||| ||| | ||| || || ||||| || || ||
Sbjct 667 TCATCGTCGTTGAGCTTGTTGTGCCAGTCGTGCATATCTTTTGAGAGATCCACCTCTTC 725
>seq9621
Length=23181
Score = 95.1 bits (104), Expect = 1e-14
Identities = 78/95 (82%), Gaps = 0/95 (0%)
Strand=Plus/Plus
Query 14204 CACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAAT 14263
|| ||||| |||||||| ||||||||||||||| |||||| || ||||| ||||| ||
Sbjct 8835 CAAGCAAAGTCACAATGGAGGCCCTCATCTCTAGAAATAAGCTCATTTGAGAATGTCAAG 8894
Query 14264 CCTGGCATCAATCCTCGtttttttAACCAAAATAT 14298
|||||||||| ||| | ||||| | ||| |||||
Sbjct 8895 CCTGGCATCATTCCCCTCTTTTTAAGCCAGAATAT 8929
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 481540149170520
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |