Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Castanea_20mollissima_20[genbank_20GCA_5F000763605.1_202014-10-06] 133,589 sequences; 833,240,550 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq16751 104 2e-17 seq9176 100 2e-16 seq10846 93.3 3e-14 seq3622 87.8 1e-12 seq23250 86.0 5e-12 seq1750 86.0 5e-12 seq13269 84.2 2e-11 >seq16751 Length=10463 Score = 104 bits (114), Expect = 2e-17 Identities = 153/214 (71%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173 || |||| |||||| || ||||| ||||| || ||||||||||| | ||| || |||| Sbjct 6764 AGCACCAGGTGAAGGGTGGATTCCTTTTGGATATTGTAGTCGGCAAGTGTGCGACCATCT 6823 Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233 || | ||||||||| ||| |||| | || || || || || | || ||||| || Sbjct 6824 TCAAGTTGTTTGCCGGCAAAGATCAACCTCTGCTGGTCTGGTGGGATACCCTCCTTGTCT 6883 Query 18234 GCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCT 18292 ||||| | || ||||| | ||| |||||| | ||| ||| | || ||| | Sbjct 6884 TGAATTT-TGGCTTTGACGTTATCAATGGTGTCAGAGCTCTCAACTTCCAAAGTAATGGT 6942 Query 18293 TTTGCCGGTCAATGTTTTTACAAAAATTTGCATT 18326 ||| || ||||| || || ||||||||||||||| Sbjct 6943 TTTTCCAGTCAAGGTCTTCACAAAAATTTGCATT 6976 >seq9176 Length=23001 Score = 100 bits (110), Expect = 2e-16 Identities = 103/135 (76%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 18098 TCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGC 18157 ||||||||| ||||| | |||| ||||||||| || || ||||| |||||||| || || Sbjct 20014 TCCTCCCCGAAGTCTCAAAACCAGGTGAAGTGTCGACTCCTTTTGGATGTTGTAATCAGC 19955 Query 18158 CATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGG 18217 | ||| || |||||||||||| ||||| ||| | || || || ||||| || ||| Sbjct 19954 AAGAGTTCGACCATCTTCCAATTGCTTGCCAGCAAAAATCAGCCTCTGTTGGTCTGGGGG 19895 Query 18218 CACGCCTTCCTTATC 18232 | |||||||| || Sbjct 19894 GATACCTTCCTTGTC 19880 >seq10846 Length=19378 Score = 93.3 bits (102), Expect = 3e-14 Identities = 160/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 18098 TCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGC 18157 |||||| || | || || |||| ||| || || || || |||||||||||||| || || Sbjct 11275 TCCTCCTCGCAATCGCAGCACCAAGTGCAGGGTCGACTCCTTTTGAATGTTGTAATCAGC 11334 Query 18158 CATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGG 18217 | ||| | | ||||||||| || ||||| ||| | || || || ||||| ||| || Sbjct 11335 TAAGGTTCTTCCATCTTCCAACTGCTTGCCAGCAAAAATCAGCCTCTGTTGGTCCGGTGG 11394 Query 18218 CACGCCTTCCTTATCGGCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGG 18276 | || || || || || | | || ||||| | ||| ||| ||| | ||| Sbjct 11395 GATACCCTCTTTGTCTTGGATCT-TAGCTTTGACATTATCAATAGTATCAGAGCTCTCAA 11453 Query 18277 TTTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATT 18326 || | || ||| |||| || ||||| || || ||||||||||||||| Sbjct 11454 CCTCCAAAGTAATGGTTTTTCCAGTCAAGGTCTTAACAAAAATTTGCATT 11503 Score = 91.5 bits (100), Expect = 1e-13 Identities = 150/214 (70%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173 || |||| ||| || || ||||| ||||| || || |||||||| | || || |||| Sbjct 11519 AGCACCAGGTGGAGGGTGGATTCCTTTTGGATATTATAGTCGGCAAGGGTGCGACCATCT 11578 Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233 || | || ||||| ||| |||| | || || |||||| || | || ||||| || Sbjct 11579 TCAAGCTGCTTGCCGGCAAAGATCAACCTCTGCTGATCCGGTGGGATACCCTCCTTGTCT 11638 Query 18234 GCAATTTGTTGCTT-GACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCT 18292 ||||| | |||| ||| | ||| |||||| | ||| ||| | || ||| | Sbjct 11639 TGAATTT-TGGCTTTGACGTTATCAATGGTGTCAGAGCTCTCAACTTCCAAAGTAATGGT 11697 Query 18293 TTTGCCGGTCAATGTTTTTACAAAAATTTGCATT 18326 ||| || ||||| || || ||||||||||||||| Sbjct 11698 TTTTCCAGTCAAGGTCTTCACAAAAATTTGCATT 11731 >seq3622 Length=48326 Score = 87.8 bits (96), Expect = 1e-12 Identities = 101/135 (75%), Gaps = 1/135 (1%) Strand=Plus/Plus Query 18098 TCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGC 18157 ||||||| | ||||| | |||| |||||||||||| || ||||| |||||||| || || Sbjct 46794 TCCTCCC-GAAGTCTCAAAACCAGGTGAAGTGTTGACTCCTTTTGGATGTTGTAATCAGC 46852 Query 18158 CATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGG 18217 | ||| || |||||||||||| || || ||| | || || || ||||| || ||| Sbjct 46853 AAGAGTTCGACCATCTTCCAATTGCTTACCAGCAAAAATCAGCCTCTGTTGGTCTGGGGG 46912 Query 18218 CACGCCTTCCTTATC 18232 | | |||||| || Sbjct 46913 GATACTTTCCTTGTC 46927 >seq23250 Length=6169 Score = 86.0 bits (94), Expect = 5e-12 Identities = 158/232 (68%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 18098 TCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGC 18157 |||||| || || || || || | || || ||||| ||||| ||||||||||| |||| Sbjct 5884 TCCTCCACGGAGCCTGAGCACGAGATGGAGCGTTGACTCTTTCTGAATGTTGTAATCGGA 5825 Query 18158 CATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGG 18217 | || || || ||||||||||| || || |||| || || || || ||| || Sbjct 5824 GAGGGTACGACCGTCCTCCAATTGTTTCCCGGCGAAGATGAGCCTCTGCTGGTCCGGCGG 5765 Query 18218 CACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGT 18277 | || |||||||| ||| | ||| || | | | ||||| | ||| Sbjct 5764 AATCCCATCCTTATCCTAAATCTTGGCCTTCACGTTGTCGATGGTGTCGGAGCTCTCCAC 5705 Query 18278 TTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATTTTT 18329 || | ||||||| | |||||||||| ||||| ||||| || ||||| ||| Sbjct 5704 CTCCAAGGTGATGGTCTTGCCGGTCAGAGTTTTCACAAAGATCTGCATCTTT 5653 >seq1750 Length=74028 Score = 86.0 bits (94), Expect = 5e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 ||||| || || || || |||| ||||| || || ||||| || ||||| ||||| ||| Sbjct 62464 CCTCCACGAAGCCTGAGAACCAAATGAAGAGTAGACTCTTTCTGGATGTTATAGTCAGCC 62405 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | || | | || |||| ||||| || ||| | || || || ||||| || || Sbjct 62404 AAAGTCCTGCCCTCCTCCAGCTGTTTTCCAGCAAATATCAGCCTCTGTTGGTCTGGTGGA 62345 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGT 18277 | ||||||||||| ||||| |||| ||||| | ||| |||||| | ||| Sbjct 62344 ATACCTTCCTTATCCTGAATTT-TTGCTTTGACGTTGTCAATTGTGTCAGAGCTCTCAAC 62286 Query 18278 TTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATT 18326 || | || || | ||||| || | || |||||||| ||||||||| Sbjct 62285 CTCGAGAGTAATAGTCTTGCCAGTAAGGGTCTTTACAAAGATTTGCATT 62237 >seq13269 Length=14915 Score = 84.2 bits (92), Expect = 2e-11 Identities = 143/205 (70%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 18123 TGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGT 18182 || ||||||||||| || ||||| ||||| || |||| || | ||| || | |||| Sbjct 14324 TGGAGTGTTGATTCCTTCTGAATATTGTAATCAGCCAGAGTGCGGCCATCCTCAAGTTGT 14265 Query 18183 TTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTGT 18242 || || ||| |||| || || || |||||| || | ||||||||||| ||| | | Sbjct 14264 TTTCCAGCAAAGATGAGCCTCTGCTGATCCGGAGGAATCCCTTCCTTATCTTGAATCT-T 14206 Query 18243 TGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGT 18301 ||| || || | | | || ||| | ||| |||| ||||||| | || || || Sbjct 14205 TGCTTTAACATTATCTATGGTATCAGAGCTCTCCACCTCAAGGGTGATGGTCTTTCCAGT 14146 Query 18302 CAATGTTTTTACAAAAATTTGCATT 18326 || || || |||||||| |||||| Sbjct 14145 CAGAGTCTTGACAAAAATCTGCATT 14121 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 378726383987805