Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Castanea_20mollissima_20[genbank_20GCA_5F000763605.1_202014-10-06]
133,589 sequences; 833,240,550 total letters
Query= NC_003083.1
Length=118584
Score E
Sequences producing significant alignments: (Bits) Value
seq16751 104 2e-17
seq9176 100 2e-16
seq10846 93.3 3e-14
seq3622 87.8 1e-12
seq23250 86.0 5e-12
seq1750 86.0 5e-12
seq13269 84.2 2e-11
>seq16751
Length=10463
Score = 104 bits (114), Expect = 2e-17
Identities = 153/214 (71%), Gaps = 2/214 (1%)
Strand=Plus/Plus
Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173
|| |||| |||||| || ||||| ||||| || ||||||||||| | ||| || ||||
Sbjct 6764 AGCACCAGGTGAAGGGTGGATTCCTTTTGGATATTGTAGTCGGCAAGTGTGCGACCATCT 6823
Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233
|| | ||||||||| ||| |||| | || || || || || | || ||||| ||
Sbjct 6824 TCAAGTTGTTTGCCGGCAAAGATCAACCTCTGCTGGTCTGGTGGGATACCCTCCTTGTCT 6883
Query 18234 GCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCT 18292
||||| | || ||||| | ||| |||||| | ||| ||| | || ||| |
Sbjct 6884 TGAATTT-TGGCTTTGACGTTATCAATGGTGTCAGAGCTCTCAACTTCCAAAGTAATGGT 6942
Query 18293 TTTGCCGGTCAATGTTTTTACAAAAATTTGCATT 18326
||| || ||||| || || |||||||||||||||
Sbjct 6943 TTTTCCAGTCAAGGTCTTCACAAAAATTTGCATT 6976
>seq9176
Length=23001
Score = 100 bits (110), Expect = 2e-16
Identities = 103/135 (76%), Gaps = 0/135 (0%)
Strand=Plus/Minus
Query 18098 TCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGC 18157
||||||||| ||||| | |||| ||||||||| || || ||||| |||||||| || ||
Sbjct 20014 TCCTCCCCGAAGTCTCAAAACCAGGTGAAGTGTCGACTCCTTTTGGATGTTGTAATCAGC 19955
Query 18158 CATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGG 18217
| ||| || |||||||||||| ||||| ||| | || || || ||||| || |||
Sbjct 19954 AAGAGTTCGACCATCTTCCAATTGCTTGCCAGCAAAAATCAGCCTCTGTTGGTCTGGGGG 19895
Query 18218 CACGCCTTCCTTATC 18232
| |||||||| ||
Sbjct 19894 GATACCTTCCTTGTC 19880
>seq10846
Length=19378
Score = 93.3 bits (102), Expect = 3e-14
Identities = 160/230 (70%), Gaps = 2/230 (1%)
Strand=Plus/Plus
Query 18098 TCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGC 18157
|||||| || | || || |||| ||| || || || || |||||||||||||| || ||
Sbjct 11275 TCCTCCTCGCAATCGCAGCACCAAGTGCAGGGTCGACTCCTTTTGAATGTTGTAATCAGC 11334
Query 18158 CATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGG 18217
| ||| | | ||||||||| || ||||| ||| | || || || ||||| ||| ||
Sbjct 11335 TAAGGTTCTTCCATCTTCCAACTGCTTGCCAGCAAAAATCAGCCTCTGTTGGTCCGGTGG 11394
Query 18218 CACGCCTTCCTTATCGGCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGG 18276
| || || || || || | | || ||||| | ||| ||| ||| | |||
Sbjct 11395 GATACCCTCTTTGTCTTGGATCT-TAGCTTTGACATTATCAATAGTATCAGAGCTCTCAA 11453
Query 18277 TTTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATT 18326
|| | || ||| |||| || ||||| || || |||||||||||||||
Sbjct 11454 CCTCCAAAGTAATGGTTTTTCCAGTCAAGGTCTTAACAAAAATTTGCATT 11503
Score = 91.5 bits (100), Expect = 1e-13
Identities = 150/214 (70%), Gaps = 2/214 (1%)
Strand=Plus/Plus
Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173
|| |||| ||| || || ||||| ||||| || || |||||||| | || || ||||
Sbjct 11519 AGCACCAGGTGGAGGGTGGATTCCTTTTGGATATTATAGTCGGCAAGGGTGCGACCATCT 11578
Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233
|| | || ||||| ||| |||| | || || |||||| || | || ||||| ||
Sbjct 11579 TCAAGCTGCTTGCCGGCAAAGATCAACCTCTGCTGATCCGGTGGGATACCCTCCTTGTCT 11638
Query 18234 GCAATTTGTTGCTT-GACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCT 18292
||||| | |||| ||| | ||| |||||| | ||| ||| | || ||| |
Sbjct 11639 TGAATTT-TGGCTTTGACGTTATCAATGGTGTCAGAGCTCTCAACTTCCAAAGTAATGGT 11697
Query 18293 TTTGCCGGTCAATGTTTTTACAAAAATTTGCATT 18326
||| || ||||| || || |||||||||||||||
Sbjct 11698 TTTTCCAGTCAAGGTCTTCACAAAAATTTGCATT 11731
>seq3622
Length=48326
Score = 87.8 bits (96), Expect = 1e-12
Identities = 101/135 (75%), Gaps = 1/135 (1%)
Strand=Plus/Plus
Query 18098 TCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGC 18157
||||||| | ||||| | |||| |||||||||||| || ||||| |||||||| || ||
Sbjct 46794 TCCTCCC-GAAGTCTCAAAACCAGGTGAAGTGTTGACTCCTTTTGGATGTTGTAATCAGC 46852
Query 18158 CATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGG 18217
| ||| || |||||||||||| || || ||| | || || || ||||| || |||
Sbjct 46853 AAGAGTTCGACCATCTTCCAATTGCTTACCAGCAAAAATCAGCCTCTGTTGGTCTGGGGG 46912
Query 18218 CACGCCTTCCTTATC 18232
| | |||||| ||
Sbjct 46913 GATACTTTCCTTGTC 46927
>seq23250
Length=6169
Score = 86.0 bits (94), Expect = 5e-12
Identities = 158/232 (68%), Gaps = 0/232 (0%)
Strand=Plus/Minus
Query 18098 TCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGC 18157
|||||| || || || || || | || || ||||| ||||| ||||||||||| ||||
Sbjct 5884 TCCTCCACGGAGCCTGAGCACGAGATGGAGCGTTGACTCTTTCTGAATGTTGTAATCGGA 5825
Query 18158 CATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGG 18217
| || || || ||||||||||| || || |||| || || || || ||| ||
Sbjct 5824 GAGGGTACGACCGTCCTCCAATTGTTTCCCGGCGAAGATGAGCCTCTGCTGGTCCGGCGG 5765
Query 18218 CACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGT 18277
| || |||||||| ||| | ||| || | | | ||||| | |||
Sbjct 5764 AATCCCATCCTTATCCTAAATCTTGGCCTTCACGTTGTCGATGGTGTCGGAGCTCTCCAC 5705
Query 18278 TTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATTTTT 18329
|| | ||||||| | |||||||||| ||||| ||||| || ||||| |||
Sbjct 5704 CTCCAAGGTGATGGTCTTGCCGGTCAGAGTTTTCACAAAGATCTGCATCTTT 5653
>seq1750
Length=74028
Score = 86.0 bits (94), Expect = 5e-12
Identities = 158/229 (69%), Gaps = 2/229 (1%)
Strand=Plus/Minus
Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158
||||| || || || || |||| ||||| || || ||||| || ||||| ||||| |||
Sbjct 62464 CCTCCACGAAGCCTGAGAACCAAATGAAGAGTAGACTCTTTCTGGATGTTATAGTCAGCC 62405
Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218
| || | | || |||| ||||| || ||| | || || || ||||| || ||
Sbjct 62404 AAAGTCCTGCCCTCCTCCAGCTGTTTTCCAGCAAATATCAGCCTCTGTTGGTCTGGTGGA 62345
Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGT 18277
| ||||||||||| ||||| |||| ||||| | ||| |||||| | |||
Sbjct 62344 ATACCTTCCTTATCCTGAATTT-TTGCTTTGACGTTGTCAATTGTGTCAGAGCTCTCAAC 62286
Query 18278 TTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATT 18326
|| | || || | ||||| || | || |||||||| |||||||||
Sbjct 62285 CTCGAGAGTAATAGTCTTGCCAGTAAGGGTCTTTACAAAGATTTGCATT 62237
>seq13269
Length=14915
Score = 84.2 bits (92), Expect = 2e-11
Identities = 143/205 (70%), Gaps = 2/205 (1%)
Strand=Plus/Minus
Query 18123 TGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGT 18182
|| ||||||||||| || ||||| ||||| || |||| || | ||| || | ||||
Sbjct 14324 TGGAGTGTTGATTCCTTCTGAATATTGTAATCAGCCAGAGTGCGGCCATCCTCAAGTTGT 14265
Query 18183 TTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTGT 18242
|| || ||| |||| || || || |||||| || | ||||||||||| ||| | |
Sbjct 14264 TTTCCAGCAAAGATGAGCCTCTGCTGATCCGGAGGAATCCCTTCCTTATCTTGAATCT-T 14206
Query 18243 TGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGT 18301
||| || || | | | || ||| | ||| |||| ||||||| | || || ||
Sbjct 14205 TGCTTTAACATTATCTATGGTATCAGAGCTCTCCACCTCAAGGGTGATGGTCTTTCCAGT 14146
Query 18302 CAATGTTTTTACAAAAATTTGCATT 18326
|| || || |||||||| ||||||
Sbjct 14145 CAGAGTCTTGACAAAAATCTGCATT 14121
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 378726383987805
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |