Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Castanea_20mollissima_20[genbank_20GCA_5F000763605.1_202014-10-06] 133,589 sequences; 833,240,550 total letters Query= NC_003278.1 Length=35580 Score E Sequences producing significant alignments: (Bits) Value seq108347 206 6e-49 seq73728 176 1e-39 >seq108347 Length=620 Score = 206 bits (228), Expect = 6e-49 Identities = 344/484 (71%), Gaps = 28/484 (6%) Strand=Plus/Minus Query 31659 CTGGGCGGNNNCGCCGCAGGCTTCAAC-CGGGCGCGTCCGCGGGTCGGCAACGTCGAGGC 31717 || ||||| |||| |||||||||| | ||| | | |||||||||||||| | | ||| Sbjct 470 CTCGGCGGCGGCGCCAAAGGCTTCAACGCCGGCAC-TGCGCGGGTCGGCAACATGGTGGC 412 Query 31718 CCATTGGGAATGCCTTGGTGGCATCGACGTGGACCCGGCCGGCCTCCGCGACTTCGAGCG 31777 | | | ||| | || ||| | ||||| || || |||| | | |||||||||| ||| Sbjct 411 CGAATACCGCTGCATCGGCGGCGTGGACGTCGATCCCGCCGCCATGCGCGACTTCGGGCG 352 Query 31778 CCTGGCCGGTGTCCCGGGCACCCTGCTGGACCTGTTCACCCGCGACCAATACATC-CGC- 31835 ||| ||||| || || ||||| |||| ||||||||| ||||| || | ||| ||| Sbjct 351 CCTCGCCGGCGTGCCCGGCACGGTGCTCGACCTGTTCGATCGCGAGCAGT--ATCGCGCT 294 Query 31836 TTCCATGGAACGGAGCCTCCCGCCGGTTGGCGGGAGGCAACCCCGGAGGAAATCCGCCGC 31895 ||||| || ||||| || || ||||| ||||| ||| ||| || || || | Sbjct 293 TTCCACGGCTGTGAGCCGCCGCAGGGCTGGCGCGAGGCGACCACGGCCGACAT---CCAC 237 Query 31896 GCCGCCGGCGGGCGCCGACCGG----ATGCCGTGTTC--ATCAGCTCGCCCTGCAAAGGC 31949 |||| ||||||| ||| ||| | ||||||| |||| |||| |||||||| Sbjct 236 GCCG-CGGCGGGACACGAGCGGCCCCACATCGTGTTCCTGTCAG--CGCCGTGCAAAGGG 180 Query 31950 GCCAGCGGCCTGCTGTCGGAGAAGATGAGCCTGACTCCGAAGTACCAGGCGCTGAACGAG 32009 |||||||||||| ||||||| | | | || ||||||| |||||||| ||| || Sbjct 179 TTCAGCGGCCTGCTCTCGGAGAGCAAGTCGCAGAGCGCGAAGTATCAGGCGCTCAACAAG 120 Query 32010 TTGACGCTGCGCTGCATCTGGCTGATGGGCGAGGCATGGGCT---GATGACCCGGTGCCG 32066 |||| |||||| |||||||||||| | ||||| | ||| ||| |||| || | Sbjct 119 CTGACCCTGCGCGGCATCTGGCTGACGCTGGAGGCTTTTGCTTCCGATCTGCCGGAGCTG 60 Query 32067 CTGATCGTCTTCGAGAACGTCCCGCGTCTGGCGAGCCGC--GGCCGGCACCTGCTGGACC 32124 |||| |||||||||| || |||||| | | || ||| ||||| | ||||| || | Sbjct 59 CTGA---TCTTCGAGAATGTGCCGCGTAT--CCAGTCGCGTGGCCGCAAGCTGCTCGATC 5 Query 32125 AGAT 32128 |||| Sbjct 4 AGAT 1 >seq73728 Length=1173 Score = 176 bits (194), Expect = 1e-39 Identities = 249/345 (72%), Gaps = 4/345 (1%) Strand=Plus/Plus Query 33004 CCGGCGCGGTGTCGGCCAGTGCGCGGCACGACAACGGTCGATGGAGCGTGGCCGATCCGC 33063 |||||||||| || | ||| | ||||||| || || ||| |||||||||||| | Sbjct 614 CCGGCGCGGTCTCCTCGGCGGCGGGCTACGACAATGGCCGCTGGTCCGTGGCCGATCCCC 673 Query 33064 GCATGCC-GAAGGCGAACGACCGGCTGACCTGCATCATCCAGTCGC-TGGATGGCACCTG 33121 | |||| | ||| | |||||| || | ||||| | || |||| || || || Sbjct 674 GGCTGCCCGCCGGC-ACGGACCGGGTGGTTGCCCGCATCC-GCAGCATGGACGGGACATG 731 Query 33122 GCACAGGCCGTTTACCACCCTGGAACTCGCCGCGCTGCAGAGCTTGGTCGACCCCGAAGA 33181 |||| ||||||| | || ||||| | |||||| |||||||| ||||||| |||||||| Sbjct 732 GCACCGGCCGTTCTCGACGCTGGAGTTGGCCGCGTTGCAGAGCCTGGTCGAGCCCGAAGA 791 Query 33182 GCAGTTGGTCCTCGACGGCCTGAGCGACAGCGACTGGCGCGAGCGGATCGGCAATGCGGT 33241 ||| | | || || || || ||| ||||||||||||||||||||||| || || Sbjct 792 GCACCTCGAACTGGAAGGATTGTCAGACTCTGACTGGCGCGAGCGGATCGGCAACGCAGT 851 Query 33242 TCCGCCGGCTGCGGCCGAGGCCATCGCCGGCGTGATGGGCACCACCCTGTTGTTGGCTGA 33301 ||||| | || || | |||||| ||| || ||||||||| || ||| || | ||| Sbjct 852 GCCGCCAGACGCCGCTGCGGCCATTGCCAGCACGATGGGCACGACGCTGCTGCTTGCTTG 911 Query 33302 GGCTGGCGAGACCTTCCTGCTCAGTAGCACGCCGATCTGGGTGCG 33346 | |||||||| |||| |||| | ||| || ||||||||||| Sbjct 912 GAGTGGCGAGAGCTTCATGCTGTCCAACACACCCATCTGGGTGCG 956 Score = 105 bits (116), Expect = 2e-18 Identities = 281/422 (67%), Gaps = 18/422 (4%) Strand=Plus/Plus Query 32301 GACATCCTCGGCCGCATGCCGCTGCCCGGCGATATCGACGCCGCCGGCCCGATGCACCGT 32360 ||| | || |||||||||||| |||||||| || | | |||| |||||||||| Sbjct 1 GACGTGCTGGGCCGCATGCCGATGCCCGGCTC---CGGCCTGGGCGGCGCGATGCACCGC 57 Query 32361 GTGCCATCCCTGCAGTGGAAGACCTGGGTTCGCCTGGCACTGGTGCGAGCCGGCAGCGAC 32420 | || ||||| ||| ||||||||||||||||||| | ||| ||||| |||||| Sbjct 58 ATCCCCAACCTGCGCTGGCAGACCTGGGTTCGCCTGGCTTTCGTGGAGGCCGGGAGCGAC 117 Query 32421 TGGCGCAGCCTGAACGACCTCGCCGTCGAGGACGGCTACCTGCGCGA--TC-TGATCATC 32477 ||||| ||| | | || || |||| |||||| | ||||| || || | | ||| Sbjct 118 TGGCGTTCGCTGGCCAAGCTGGCGATCGAAGACGGCCAGCTGCGTGACTTCGCGCTGATC 177 Query 32478 GTCCCGA--AATACCGGGCTGGCTACATGGGCGTGCACGGTTGGAACGACAGCACGGGCA 32535 || || | | || || || | ||||||| ||| ||| |||| | |||| Sbjct 178 --CCGGAGGAGTGGCGAGCCAGCGTGCTCGGCGTGCGCGGCTGGGACGAGCCCTGCGGCA 235 Query 32536 CCATCGCCGGTCGCAGCAGCCCCACGAACGGCGCATTCTCTGTCGCGGACCCGCG----- 32590 || | || || || |||| || || |||||||| | ||| || | || || || Sbjct 236 CCGTGGCTGGACGTAGCACGCCGACCAACGGCGCCTACTCGGTATCCGATCCACGCTTCT 295 Query 32591 -CGCGCCGGCAAACGCCCTGCAATACCAGCAGTACGGCGTGCGCCGCTGGACCGACACCT 32649 ||| ||| || | | |||||||| || ||||| ||||| ||| || Sbjct 296 TCGCTTCGGAGAAGTGGCGAGATGGGCAGCAGTATGGAGTGCGAGGCTGGGGCGATACGG 355 Query 32650 CGGGCGCCATCATCGGCGTCA-AGTCGCCCGGCCAAGGCACGTACTCCGTCGCCGATCCC 32708 || | |||| ||| |||| || |||| || ||||| | ||| |||| ||||| ||| Sbjct 356 CGCACTGCATCGCCGG-GTCACAGGCGCCAGGGCAAGGAGCCTACGCCGTGGCCGACCCC 414 Query 32709 CG 32710 || Sbjct 415 CG 416 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 113553975230956