Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Castanea_20mollissima_20[genbank_20GCA_5F000763605.1_202014-10-06] 133,589 sequences; 833,240,550 total letters Query= NC_003309.1 Length=53373 Score E Sequences producing significant alignments: (Bits) Value seq60277 284 4e-72 seq92062 279 2e-70 seq89412 232 2e-56 seq60278 158 4e-34 >seq60277 Length=808 Score = 284 bits (314), Expect = 4e-72 Identities = 453/639 (71%), Gaps = 16/639 (3%) Strand=Plus/Plus Query 33443 CAGCCGATGATGGTTGTACCAGGCGACCCATTCCAGCGTTGCCAGTTCGACGGATTCCCT 33502 |||||| |||||||| ||||| |||||||||| ||||| || |||||||| ||| Sbjct 5 CAGCCGGCGATGGTTGAACCAGTCGACCCATTCGAGCGTGGCGTATTCGACGGCTTCAAA 64 Query 33503 CGTTTTCCAAGGGGCGCGCCGATGAATCAGTTCCGTCTTGTACAGGCCGTTGATCGTTTC 33562 | ||| || | |||| || |||| ||| | |||||| |||||||||||||| || Sbjct 65 GCTGCGCCACGGTCCACGCCTGTGGATCACTTCGGCCTTGTAAAGGCCGTTGATCGTCTC 124 Query 33563 GGCCAGCGCATTGTCGTAGCTGTCGCCCCGGCTGCCGACTGAGGGCTCGATGCCGGCCTC 33622 ||||| || ||||||||||||||||| |||||| || || ||||| || ||||| || Sbjct 125 GGCCAAAGCGTTGTCGTAGCTGTCGCCGACGCTGCCAACCGATGGCTCTATCCCGGCTTC 184 Query 33623 AGCCAGCCGTTCGCTGTAGCGAATGCTGACGTATTGAGACCCCCTGTCGGAATGATGAAT 33682 || || || ||| |||| ||| |||||||| ||||||| |||| |||||||| Sbjct 185 GGCGAGGCGCTCGGTGTACTTGATGGACACGTATTGCGACCCCCGGTCGCTGTGATGAAT 244 Query 33683 CAAA--GTCCCGTCCTCGCCCGGTTGGCGGGCGTACAGCGCTTGTTCAAGTGCATCCAGA 33740 | | | |||| | |||| |||| | | || || || || || ||||| || Sbjct 245 GAGACCGCCCCG--ATGAGCCGGCCGGCGATCATGGAGAGCCTGCTCCAGGGCATCGAGG 302 Query 33741 ACAAAGTCCGTGGTCAT-CGACG---AGCTGACCCGCCAGCCAACAATACGGCGGGCGAA 33796 || ||| ||| ||| || || |||| ||||||| || || || || | |||| | Sbjct 303 ACGAAG---CTGG-CATGCGCCGTTCTGCTGGCCCGCCACCCCACGATCCGCCTGGCGTA 358 Query 33797 CACGTCGATCACGAATGCCACGTACAGCCAGCCTTGCCATGTCGAGACATACGTAAAATC 33856 ||| || ||||| |||||||| | |||| ||| |||| ||| || || ||||| Sbjct 359 GGTGTCTATGACGAAGGCCACGTAGACGAAGCCCGCCCAGGTCGCGACGTAGGTGAAATC 418 Query 33857 CGACACCCAGAGCTGATTCGGTCGGT-CAGCCTTGAACTGCCGGTTGACTCGGTCCAGCG 33915 ||||||||| ||| ||||| || | || | |||| |||||||| | ||||||| Sbjct 419 CGACACCCACAGCATGTTCGG-CGCTGGCGCGTAGAACCTGCGGTTGACGTGATCCAGCG 477 Query 33916 GGCGCGGCGCGGTCACATCGGTAATCGTCGTGCGAACACGCTTACCGCGAACTGCGCCAC 33975 ||| |||||| | | ||| | |||||||||||||| |||| || | | |||| Sbjct 478 GGCACGGCGCTGCCTTGTCGCTCATCGTCGTGCGAACCGGCTTGCCCCTGATCACGCCCT 537 Query 33976 GCA-AGCCCTGCAGCTTCATCAACCGTCCGACCGTGCAGCGTGCCACCGTAATGCCTTCC 34034 | | | || | || ||||| ||| ||| |||||||| || |||| | ||| || Sbjct 538 GTAGACCCATATCGC-GCATCAGCCGCTCGATGGTGCAGCGGGCGACCGGGAAGCCCTCG 596 Query 34035 CGGTTCATCTGCTTCCAGACCTTCGGCACGCCGTAGACC 34073 || |||||||| ||||||||| | |||||||||||| Sbjct 597 CGCATCATCTGCCGCCAGACCTTGCGGACGCCGTAGACC 635 >seq92062 Length=823 Score = 279 bits (308), Expect = 2e-70 Identities = 571/828 (69%), Gaps = 47/828 (6%) Strand=Plus/Plus Query 33833 CCATGTCGAGACATACGTAAAATCCGACACCCAGAGCTGATTCGGT-CGGTCAGCCTTGA 33891 ||| |||| ||| || || || ||||||||||| ||| ||||| | | | ||| || Sbjct 16 CCAGGTCGCGACGTAGGTGAAGTCCGACACCCACAGCATGTTCGGCGCCGGC-GCCCGGA 74 Query 33892 ACTGCCGGTTGACTCGGTCCAGCGGGCGCGGCGCGGTCACATCGGTAATCGTCGTGCGAA 33951 ||||||||||||| ||||| ||||||| || || | | ||| | | || ||||| | Sbjct 75 ACTGCCGGTTGACCCGGTCGAGCGGGCATGGTGCTGCCTTGTCGCTGACGGTGGTGCGCA 134 Query 33952 CACGCTTACCGCGAACTGCGCCACGCAAGCCC-TGCAGCTTCATCAACCGTCCGACCGTG 34010 | |||| ||||||| | || ||| |||| || || ||||| |||| |||| ||| Sbjct 135 CTGGCTTGCCGCGAATGACACCCTGCAGGCCCATGTCGCG-CATCAGCCGTTCGACTGTG 193 Query 34011 CAGCGTGCCACCGTAATGCCTTCCCGGTTCATCTGCTTCCAGACCTTCGGCACGCCGTAG 34070 ||||| || |||| || ||| || || |||||||| ||| ||||| ||||||||||| Sbjct 194 CAGCGGGCAACCGCAAAGCCCTCGCGCCTCATCTGCCGCCACACCTTGCGCACGCCGTAG 253 Query 34071 ACCTGCATGTTGGCCTGCCAGACACGCTTG--ATCTCCGGTTGCAAAAGCTCATCGCGTT 34128 || | | ||| | | || |||||| | |||||| | | ||||||| Sbjct 254 ACGCGGAAGTTCTCTT--CAAACACGCGGCGCACCTCCGGCCGGAGCGCAGCATCGCGCC 311 Query 34129 TCGCGCGGGCGCAGCGTTTCGACGGATCGCGAAGTTGTGCTGCATGGCG-TCGG--TAGC 34185 || || || | ||| | | ||| || | || || ||| | | ||| || Sbjct 312 GAGCCCGAGCCGACCGTCTGGTCGGCTCA--ACCTTCTGG-GCAACGTGCTCGTAATAAG 368 Query 34186 CCGACGGGGCAATCCGCAAGACCTTGCAGATCGGCTCGACCCCGAAGGTGTCGCGATGCT 34245 ||||||||| ||| ||| ||| ||| |||||||||||||||| | ||||||||| Sbjct 369 TCGACGGGGCGATCGGCAGAACCCTGCTGATCGGCTCGACCCCGTAAACCTCGCGATGCA 428 Query 34246 GATCAATGAAGGCCTTCAGGACTTGAAACGGCGGTCGAGCTCCGCCTGAGCGAAAAACGC 34305 || |||||||| ||| ||| | ||||||||||||||||| || ||| |||| Sbjct 429 CGTCGATGAAGGCGATCATCGCTTCAGTGGGCGGTCGAGCTCCGCCATCGCAAAATACGC 488 Query 34306 GCTCGCCAGTTTG---AGAATCTCGTTGGTCCGGCGCAGTTCCTTGACCTCGCGCTCCAA 34362 ||||||| ||| || |||||||||| | ||||||| || | |||||| || | Sbjct 489 GCTCGCC---TTGCGCAGGATCTCGTTGGCCTGGCGCAGCTCGCGGTTCTCGCGTTCGAG 545 Query 34363 GGCTTTGATGCGTTCA-------CGCTCGGCCGTACTCACGCCATCGCGCTCTCCACGGT 34415 || || || || ||| ||||||| |||||| ||||| || | || Sbjct 546 CGCCTTCATCCGGTCAGCGACATCGCTCGG-------CACGCCGGCGCGCGAACCGCTGT 598 Query 34416 CGACCTCGTTGCGCTTAACCCAATCCAACAGCGTCTG--CGGCGTGCAGCCGATCATCGG 34473 |||||||| ||| ||||| || |||||||||| |||| ||||||||| ||| Sbjct 599 CGACCTCGGCCTTCTTCACCCACTCGTACAGCGTCTGGCCGGC--ACAGCCGATCTTCGC 656 Query 34474 CGCAATCGATTCGACGGCCGCCCACATCGACGGGTGCTCGCTACGC-TGCTCGCGTACCA 34532 ||||||||| | || || ||||| |||||| || || || | | || || | |||| Sbjct 657 CGCAATCGACACCACCGCTGCCCAGCGCGACGGATGGTC-CTTCTCGTGATCCAGCACCA 715 Query 34533 GGCGCACTGCGCGCTCTCGGACTTCCGGGGAAAACTGCTT----GGCTT-CTGTTCATGG 34587 || || || || | || || || || ||||||| || | ||| || |||| | Sbjct 716 TCCGGACCGCACGGGCGCGCACCTCGGGTGAAAACTTGTTCGTCGTCTTGCTCGTCATAG 775 Query 34588 CTCCATTCTCTCA-GAGTTGGAGCCTCC-ACAAACTCGGGGCGGTTCA 34633 | || | |||||| ||||||| |||||| |||||| |||||||||||| Sbjct 776 CCCCTTCCTCTCAGGAGTTGGGGCCTCCGACAAACCCGGGGCGGTTCA 823 >seq89412 Length=862 Score = 232 bits (256), Expect = 2e-56 Identities = 495/728 (68%), Gaps = 30/728 (4%) Strand=Plus/Minus Query 33393 TAGTAGTTTGCCTCAGCTTCAGCGGGCGGGATATAGCCGAGCGGTTCCATCAGCCGATGA 33452 |||||| ||||| || || ||||| || || | |||| || |||| ||| || | Sbjct 793 TAGTAGCGCGCCTCTGCCTCGGCGGGTGGCATGTTTCCGATAGGCTCCAGCAGGCGTCGG 734 Query 33453 TGGTTGTACCAGGCGACCCATTCCAGCGTTGCCAGTTCGACGGATTCCCTCG----TTTT 33508 | |||| ||||| | ||||||||||| || || | || |||| ||||| | Sbjct 733 TTGTTGAACCAGTCCACCCATTCCAGGGTGGCGAACTCCACGG----CCTCGAAGCTCCG 678 Query 33509 CCAAGGGGCGCGCCGATGAATCAGTTCCGTCTTGTACAGGCCGTTGATCGTTTCGGCCAG 33568 ||| || ||||||| || |||| || | |||| ||||||||||||| | || || || Sbjct 677 CCACGGACCGCGCCGGTGGATCACCTCGGCCTTGAACAGGCCGTTGATGCTCTCAGCGAG 618 Query 33569 CGCATTGTCGTAGCTGTCGCCCCGGCTGCCGACTGAGGGCTCGATGCCGGCCTCAGCCAG 33628 || || |||||| ||||| ||||||||| ||||||| || ||| ||||| | || Sbjct 617 GGCGTTATCGTAGGAATCGCCGACGCTGCCGACCGAGGGCTGGACGCCCGCCTCGACGAG 558 Query 33629 CCGTTCGCTGTAGCGAATGCTGACGTATTGAGACCCCCTGTCGGAATGATGAATCAAAGT 33688 || ||| ||||||| | | ||| || ||||||||||| || || || || Sbjct 557 GCGCTCGGTGTAGCGCAGCGCAAGGTACTGCGACCCCCTGTCCGAGTGGTG---CACGAG 501 Query 33689 CCCGTCCT---CGCCCGGTTGGCGGGCGTACAGCGCTTGTTCAAGTGCATCCAGAACAAA 33745 |||||| | | | || |||| || ||| || || || || || ||||| || || Sbjct 500 CCCGTCGTTTCGGACGGGACGGCGCTGGTGCAGGGCCTGCTCCAGGGCGTCCAGCACGAA 441 Query 33746 G-TC-CGTGGTCATCGACGAGCTGACCCGCCAGCCAACAATACGGCGGGCGAACACGTCG 33803 | || ||||| || | || | || ||||| || || || || ||||| || ||||| Sbjct 440 GCTCGCGTGGGCAGC-CCGTG-ACACGCGCCAACCGACGATGCGCCGGGCAAAGGCGTCG 383 Query 33804 ATCACGAATGCCACGTACAGCCAGCCTTGCCATGTCGAGACATACGTAAAATCCGACACC 33863 || |||||||||||||| | ||||| ||| |||| || || || || || ||| Sbjct 382 ATGACGAATGCCACGTAGACGAAGCCTGACCAGGTCGCCACGTAGGTGAAGTCGCTGACC 323 Query 33864 CAGAGCTGATTCGGTCGGTCAGCCTTGAACTGCCGGTTGACTCGGTCCAGCGGGCGCGGC 33923 || | ||| || || ||| ||||||| |||||||| ||||||||||||| | Sbjct 322 CACAAGGCATTTGGCCGCGGTGCCCTGAACTGGCGGTTGACGCGGTCCAGCGGGCAAGCG 263 Query 33924 GCGGTCACATCGGTAATCGTCGTGCGAACACGCTTACCGCGAACTGCGCCACGC----AA 33979 || | | || | || || |||||||| ||| | || | || |||| | | Sbjct 262 GCAGCCGGGTCAGGGATGGTGGTGCGAAC---CTTTCTGC--CCCGCACCACCCCTTTCA 208 Query 33980 GCCC--TGCAGCTTCATCAACCGTCCGACCGTGCAGCGTGCCACCGTAATGCCTTCCCGG 34037 |||| ||| || ||||| ||| ||||||| || || ||| | || |||||||| Sbjct 207 GCCCCATGC-GCCGCATCAGGCGTGCGACCGTACAACGGGCCGTCACGATCCCTTCCCGC 149 Query 34038 TTCATCTGCTTCCAGACCTTCGGCACGCCGTAGACCTGCATGTTGGCCTGCCAGACACGC 34097 | |||| ||| ||||| ||||||||||||| || | ||| |||| | || ||| Sbjct 148 GCGAGCTGCCGCCAAACCTTGCGCACGCCGTAGACATGGAAGTTCGCCTCGAACACGCGC 89 Query 34098 TTGATCTC 34105 |||||| Sbjct 88 CGGATCTC 81 >seq60278 Length=850 Score = 158 bits (174), Expect = 4e-34 Identities = 279/397 (70%), Gaps = 15/397 (4%) Strand=Plus/Plus Query 34248 TCAATGAAGGCCTTCAGGACTTGAAACGGCGGTCGAGCTCCGCCTGAGCGAAAAACGCGC 34307 || |||||||| ||| | ||| ||||||||||||||||||| || ||| | ||| Sbjct 3 TCGATGAAGGCGATCATCGCCGGAACGGGCGGTCGAGCTCCGCCTGGGCAAAATATGCGG 62 Query 34308 TCGCCAGTTTGAGAATCTCGTTGGTCCGGCGCAGTTCCTTGACCTCGCGCTCCAAGGCTT 34367 ||| ||| |||||||||| | | |||| || ||| ||||| |||| || | Sbjct 63 ATGCCTTGCGGAGGATCTCGTTGGCCTGTCGCAACTCGCGGACTTCGCGTTCCAGCGCCT 122 Query 34368 TGATGCGTTC---ACGCTCGGCCGTACTCACGCCATCGCGCTCTCCACGGTCGACCTCGT 34424 | || || | |||| || |||||| |||||| || | || ||||| Sbjct 123 TCATCTTGTCGGCAACTTCGGTCGGG---ACGCCAGCGCGCTTGCCGCTGTTCACCTCCG 179 Query 34425 TGCGCTTAACCCAATCCAACAGCGTCTGCGGCGTGCAGCCGATCATCGGCGCAATCGATT 34484 ||| ||||| || |||||||||||| |||||||||| || ||||| || Sbjct 180 CCTTCTTTACCCACTCATGCAGCGTCTGCGGAACGCAGCCGATCTTCTCGGCAATGGAAA 239 Query 34485 CGACGGCCGCCCACATCGACGGGTGCTCGC-TACGCTGCTCGCGTACCAGGCGCACTGCG 34543 | | ||||||||| ||||||||| |||| | || || ||| | |||| ||||| || Sbjct 240 CTATCGCCGCCCACCGCGACGGGTGATCGCGTTCG-TGGTCGAGCACCATCCGCACCGCT 298 Query 34544 CGCTCTCGGACTTCCGGGGAAAAC-TGCTTGGCTTC-TGTTCAT---GGCTCCATTCTCT 34598 ||||| ||||| || || | |||| || | | | || || |||| ||||||| ||| Sbjct 299 CGCTCGCGGACCTCAGGCGCAAACTTGTTCGTCGTCTTGCTCATACAGGCTCCACCTTCT 358 Query 34599 CA-GAGTTGGAGCCTCC-ACAAACTCGGGGCGGTTCA 34633 || |||||||||||||| |||||| |||||||||||| Sbjct 359 CAGGAGTTGGAGCCTCCGACAAACCCGGGGCGGTTCA 395 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 170401251166030