Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Castanea_20mollissima_20[genbank_20GCA_5F000763605.1_202014-10-06]
133,589 sequences; 833,240,550 total letters
Query= NC_003310.1
Length=196858
Score E
Sequences producing significant alignments: (Bits) Value
seq78534 163 4e-35
seq11270 122 1e-22
seq588 84.2 3e-11
>seq78534
Length=1057
Score = 163 bits (180), Expect = 4e-35
Identities = 550/837 (66%), Gaps = 32/837 (4%)
Strand=Plus/Minus
Query 62694 GTTTCAAAGATCTTCTTATTTAGATCTTGTGCTTCCGGGCTATCAAATGGATAATTTAAG 62753
|| |||||||||| | || || | | ||||| |||||||||||||| | | |
Sbjct 912 GTCTCAAAGATCTGGATGTTGAGCTGTCTGGCTTCGGGGCTATCAAATGGC-ATTCGCAA 854
Query 62754 AGA-ATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATT 62812
|| || || || || || || ||||| ||||| | || || || | ||||||| | ||
Sbjct 853 AGCCATGAATGCATCAGCCAAACCTTGTACACCCAGGCCAATGGGACGATGTCTCATGTT 794
Query 62813 AGAGATTTCA-GCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTTC 62871
| |||| ||||| || | |||||| | || || | ||||| || || | || |
Sbjct 793 -GCTCTTTCGTGCTTCGGGCACAGGATAGAAGTTGATGTTGATAATCTTGTTCAAGTTGC 735
Query 62872 -TGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAA-------TCGCCCATC 62923
|| || | || |||| |||| | || | ||||||| | ||| ||
Sbjct 734 GTGTCA-TGACCTTGATGACATTATGCAATCCCTGAAAATCGTAGATTCCTTCGGCCTGG 676
Query 62924 TATTACAAACATGTT--CAATGCAACAGATGCCAGATTACACACGGCTACCTCATTAGCA 62981
| | ||||| || | || || ||||| || ||||| || || || || |||| | |
Sbjct 675 T-TGACAAA--TGCTGGCAGTGAGACAGACGCGAGATTGCAAACTGCGACTTCATCTGGA 619
Query 62982 TCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGT 63041
| | ||| | || || || ||||| || || ||||||| ||||| | || | |
Sbjct 618 GCAGTATACTCAATGATTTCGGTGCAGAGGTTGGATGACTTGATCGTTCCCAGGTTCTTT 559
Query 63042 TGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATC 63101
|| || ||||| ||| || ||||| || || || ||||||||| | ||||| ||| ||
Sbjct 558 TGGTTGCTCTTGCGGTTGCAGGCATCTTTGTACAGCATGAATGGATTGCCAGTCTCAGTC 499
Query 63102 TGAGATTCTATAATCGCTTTCCAGACGACTC-GAGCCTTTATTATAGATTTGTATCTCCT 63160
|||| || || || || | ||| | | || ||||||| ||| | | | | | |
Sbjct 498 TGAGCCTCAATGATGGCATACCACA-GTTTCTGAGCCTTAATTGTC---TGGCGGCCCTT 443
Query 63161 TTCT--CTT-TCGTATAGAGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTC--- 63214
| || ||| || ||| || |||| ||||| ||||| || | || |||
Sbjct 442 TCCTGCCTTCTCATATTTGGTGAACAAGGCCTCGAATTCGTCGCCGTAG-CA--GTCAGA 386
Query 63215 CAATCTAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTT 63274
||| | ||||||||||| |||||||||| | ||| ||| | | | | ||||| ||
Sbjct 385 CAAACCAGGACATTCATTGGGACACATCAGTGTCCAGTCTGCATTCTTTTCTACTCGCTT 326
Query 63275 CATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTTGTTCTATGTTCCTCGTT 63334
||| || || ||||||||||| ||||| || |||||||| | ||| ||| || ||
Sbjct 325 CATGAATAGGTCAGGAATCCAGAGAGCGTAGAAGAGATCTCTGGCTCTGACTTCTTCTTT 266
Query 63335 TCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTA 63394
|| |||||| | | | ||| || | | | ||||| ||||| || || | |||
Sbjct 265 GCCGTGGTTCTTTCTCAAGTTGAGCCACTCGAATACATCAGCGTGCCATGGCTCAAGGTA 206
Query 63395 TATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATT 63454
||||| | | || || | ||||| || || ||||| | ||| | ||| ||||| |
Sbjct 205 AATGGCGAAGGCACCTGGTCTCTTGTTGCCGCCTTGATCGACGTACCGAGCAGTGTTGTC 146
Query 63455 ATAAACTCTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATA 63511
| | |||| || ||| || | | |||||| || | || || ||||| | ||| ||
Sbjct 145 AAAGACTCGCAGCATAGGCGTCAGACCGTTCGAAGTGCCGTTTGTACCCGCGATGTA 89
>seq11270
Length=18388
Score = 122 bits (134), Expect = 1e-22
Identities = 243/355 (68%), Gaps = 10/355 (3%)
Strand=Plus/Plus
Query 33582 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGT 33641
|| |||||||||||||| || || ||||||| || || ||||| || || || |
Sbjct 5488 CACGCGAAATCGCAGTGGAGGCCTTCGTCTCGCGAGATCAACTCGTTGGAGAAGGTTAAC 5547
Query 33642 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAG 33701
|||||||||| || |||||||| ||||||||||| | ||| ||||| |||||
Sbjct 5548 CCGGGCATTAACCCGCGCTTTTTTAGCCAAAATATCGCGCAGAAGCTACCGGAGAAGAAA 5607
Query 33702 ATTCCTTCTACTGCA-GCAAAGGCAATAAGTCTCTCTCCATAAC----CGGCGCTGTCAT 33756
|| ||||| || ||| || || || || || ||||| | ||| | ||| |||
Sbjct 5608 ATGCCTTCGAC-GCAGGCGAAAGCGATGAGCCTCTCGGC-GAACGATTCTCCGCCGTC-- 5663
Query 33757 GTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCAT 33816
|||||| | ||||| ||||||||||| || ||||| | || || || || |
Sbjct 5664 -GATCCACCGCAGGGCCCACTCGGCCTTCTTCGCCACGCAAGGAACGGTCTCCATCGCGT 5722
Query 33817 TAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACA 33876
|| || ||| || || || || | ||| || |||| ||| ||||| ||||
Sbjct 5723 GGAACAGCCGGTTCTTCTCGGCCGAGTCCTTGATATAGGTCTCGAGCAAGAGACTGTACA 5782
Query 33877 TTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTC 33931
|||| || || || || || || || ||||| || || |||||| | ||||||
Sbjct 5783 TTTCAGAGTGGATATTCTCGATCGCAATCTGGAAGCCATAGAAAGCGCGAGCCTC 5837
>seq588
Length=109198
Score = 84.2 bits (92), Expect = 3e-11
Identities = 157/228 (69%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 63663 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTG 63722
|| || ||||| || | || |||||||| || || ||||| | ||| | | || |
Sbjct 12940 GTCCCTGCATTGAAAAGAGTGGGAGAAGCATGAGTGAACCACCGCTGAGACATCATATGG 12881
Query 63723 TACGTCTCAATAGCTGAGTCTATATCC-CATTGATGAATTCCTACTGCGACACGCATTAA 63781
|| || | ||| |||| || ||||| | ||| |||||||| || | || | ||||||
Sbjct 12880 TATGTTTTGATAACTGAATCAATATCATCCTTG-TGAATTCCAACAGAAACCCTCATTAA 12822
Query 63782 CATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAA 63841
|||||||||||| ||||| |||| || | | ||||| | ||| || | || |
Sbjct 12821 CATGTGCTGAGGCCTTTCTACAACCTTCCCTTGGACCTTCAATAGGTAAGACCTCTCAAG 12762
Query 63842 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 63889
||||| |||||||| || | || |||||||| || || || ||
Sbjct 12761 GGTTTTGAAACCAAAGTAATCATAGTCAAAGTCTCTATCATAGATGAT 12714
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 628765891207920
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |