Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Castanea_20mollissima_20[genbank_20GCA_5F000763605.1_202014-10-06] 133,589 sequences; 833,240,550 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq78534 163 4e-35 seq11270 122 1e-22 seq588 84.2 3e-11 >seq78534 Length=1057 Score = 163 bits (180), Expect = 4e-35 Identities = 550/837 (66%), Gaps = 32/837 (4%) Strand=Plus/Minus Query 62694 GTTTCAAAGATCTTCTTATTTAGATCTTGTGCTTCCGGGCTATCAAATGGATAATTTAAG 62753 || |||||||||| | || || | | ||||| |||||||||||||| | | | Sbjct 912 GTCTCAAAGATCTGGATGTTGAGCTGTCTGGCTTCGGGGCTATCAAATGGC-ATTCGCAA 854 Query 62754 AGA-ATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATT 62812 || || || || || || || ||||| ||||| | || || || | ||||||| | || Sbjct 853 AGCCATGAATGCATCAGCCAAACCTTGTACACCCAGGCCAATGGGACGATGTCTCATGTT 794 Query 62813 AGAGATTTCA-GCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTTC 62871 | |||| ||||| || | |||||| | || || | ||||| || || | || | Sbjct 793 -GCTCTTTCGTGCTTCGGGCACAGGATAGAAGTTGATGTTGATAATCTTGTTCAAGTTGC 735 Query 62872 -TGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAA-------TCGCCCATC 62923 || || | || |||| |||| | || | ||||||| | ||| || Sbjct 734 GTGTCA-TGACCTTGATGACATTATGCAATCCCTGAAAATCGTAGATTCCTTCGGCCTGG 676 Query 62924 TATTACAAACATGTT--CAATGCAACAGATGCCAGATTACACACGGCTACCTCATTAGCA 62981 | | ||||| || | || || ||||| || ||||| || || || || |||| | | Sbjct 675 T-TGACAAA--TGCTGGCAGTGAGACAGACGCGAGATTGCAAACTGCGACTTCATCTGGA 619 Query 62982 TCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGT 63041 | | ||| | || || || ||||| || || ||||||| ||||| | || | | Sbjct 618 GCAGTATACTCAATGATTTCGGTGCAGAGGTTGGATGACTTGATCGTTCCCAGGTTCTTT 559 Query 63042 TGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATC 63101 || || ||||| ||| || ||||| || || || ||||||||| | ||||| ||| || Sbjct 558 TGGTTGCTCTTGCGGTTGCAGGCATCTTTGTACAGCATGAATGGATTGCCAGTCTCAGTC 499 Query 63102 TGAGATTCTATAATCGCTTTCCAGACGACTC-GAGCCTTTATTATAGATTTGTATCTCCT 63160 |||| || || || || | ||| | | || ||||||| ||| | | | | | | Sbjct 498 TGAGCCTCAATGATGGCATACCACA-GTTTCTGAGCCTTAATTGTC---TGGCGGCCCTT 443 Query 63161 TTCT--CTT-TCGTATAGAGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTC--- 63214 | || ||| || ||| || |||| ||||| ||||| || | || ||| Sbjct 442 TCCTGCCTTCTCATATTTGGTGAACAAGGCCTCGAATTCGTCGCCGTAG-CA--GTCAGA 386 Query 63215 CAATCTAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTT 63274 ||| | ||||||||||| |||||||||| | ||| ||| | | | | ||||| || Sbjct 385 CAAACCAGGACATTCATTGGGACACATCAGTGTCCAGTCTGCATTCTTTTCTACTCGCTT 326 Query 63275 CATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTTGTTCTATGTTCCTCGTT 63334 ||| || || ||||||||||| ||||| || |||||||| | ||| ||| || || Sbjct 325 CATGAATAGGTCAGGAATCCAGAGAGCGTAGAAGAGATCTCTGGCTCTGACTTCTTCTTT 266 Query 63335 TCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTA 63394 || |||||| | | | ||| || | | | ||||| ||||| || || | ||| Sbjct 265 GCCGTGGTTCTTTCTCAAGTTGAGCCACTCGAATACATCAGCGTGCCATGGCTCAAGGTA 206 Query 63395 TATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATT 63454 ||||| | | || || | ||||| || || ||||| | ||| | ||| ||||| | Sbjct 205 AATGGCGAAGGCACCTGGTCTCTTGTTGCCGCCTTGATCGACGTACCGAGCAGTGTTGTC 146 Query 63455 ATAAACTCTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATA 63511 | | |||| || ||| || | | |||||| || | || || ||||| | ||| || Sbjct 145 AAAGACTCGCAGCATAGGCGTCAGACCGTTCGAAGTGCCGTTTGTACCCGCGATGTA 89 >seq11270 Length=18388 Score = 122 bits (134), Expect = 1e-22 Identities = 243/355 (68%), Gaps = 10/355 (3%) Strand=Plus/Plus Query 33582 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGT 33641 || |||||||||||||| || || ||||||| || || ||||| || || || | Sbjct 5488 CACGCGAAATCGCAGTGGAGGCCTTCGTCTCGCGAGATCAACTCGTTGGAGAAGGTTAAC 5547 Query 33642 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAG 33701 |||||||||| || |||||||| ||||||||||| | ||| ||||| ||||| Sbjct 5548 CCGGGCATTAACCCGCGCTTTTTTAGCCAAAATATCGCGCAGAAGCTACCGGAGAAGAAA 5607 Query 33702 ATTCCTTCTACTGCA-GCAAAGGCAATAAGTCTCTCTCCATAAC----CGGCGCTGTCAT 33756 || ||||| || ||| || || || || || ||||| | ||| | ||| ||| Sbjct 5608 ATGCCTTCGAC-GCAGGCGAAAGCGATGAGCCTCTCGGC-GAACGATTCTCCGCCGTC-- 5663 Query 33757 GTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCAT 33816 |||||| | ||||| ||||||||||| || ||||| | || || || || | Sbjct 5664 -GATCCACCGCAGGGCCCACTCGGCCTTCTTCGCCACGCAAGGAACGGTCTCCATCGCGT 5722 Query 33817 TAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACA 33876 || || ||| || || || || | ||| || |||| ||| ||||| |||| Sbjct 5723 GGAACAGCCGGTTCTTCTCGGCCGAGTCCTTGATATAGGTCTCGAGCAAGAGACTGTACA 5782 Query 33877 TTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTC 33931 |||| || || || || || || || ||||| || || |||||| | |||||| Sbjct 5783 TTTCAGAGTGGATATTCTCGATCGCAATCTGGAAGCCATAGAAAGCGCGAGCCTC 5837 >seq588 Length=109198 Score = 84.2 bits (92), Expect = 3e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 63663 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTG 63722 || || ||||| || | || |||||||| || || ||||| | ||| | | || | Sbjct 12940 GTCCCTGCATTGAAAAGAGTGGGAGAAGCATGAGTGAACCACCGCTGAGACATCATATGG 12881 Query 63723 TACGTCTCAATAGCTGAGTCTATATCC-CATTGATGAATTCCTACTGCGACACGCATTAA 63781 || || | ||| |||| || ||||| | ||| |||||||| || | || | |||||| Sbjct 12880 TATGTTTTGATAACTGAATCAATATCATCCTTG-TGAATTCCAACAGAAACCCTCATTAA 12822 Query 63782 CATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAA 63841 |||||||||||| ||||| |||| || | | ||||| | ||| || | || | Sbjct 12821 CATGTGCTGAGGCCTTTCTACAACCTTCCCTTGGACCTTCAATAGGTAAGACCTCTCAAG 12762 Query 63842 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 63889 ||||| |||||||| || | || |||||||| || || || || Sbjct 12761 GGTTTTGAAACCAAAGTAATCATAGTCAAAGTCTCTATCATAGATGAT 12714 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628765891207920