Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Castanea_20mollissima_20[genbank_20GCA_5F000763605.1_202014-10-06] 133,589 sequences; 833,240,550 total letters Query= NC_003324.1 Length=57416 Score E Sequences producing significant alignments: (Bits) Value seq108347 262 1e-65 seq110152 156 2e-33 seq88363 143 1e-29 seq73728 109 2e-19 seq65096 96.9 1e-15 seq113712 89.7 2e-13 >seq108347 Length=620 Score = 262 bits (290), Expect = 1e-65 Identities = 357/493 (72%), Gaps = 4/493 (1%) Strand=Plus/Plus Query 43509 ATCTGATCGAGCAACTTGCGGCCACGGTTCATGATGCGCGGCACATTTTCGAAAATGATC 43568 ||||||||||||| |||||||||||| | ||| ||||||||||| ||||| || | | Sbjct 1 ATCTGATCGAGCAGCTTGCGGCCACGCGACTGGATACGCGGCACATTCTCGAAGATCAGC 60 Query 43569 AGCTTGGGAAGCTTGTCCTTGAAGGCTTCCAGCATCAGCCACACGCCGCGCAACGTCAGC 43628 |||| || || | | || || |||||| ||||||| | |||||||| |||||| Sbjct 61 AGCTCCGGCAGATCGGAAGCAAAAGCCTCCAGCGTCAGCCAGATGCCGCGCAGGGTCAGC 120 Query 43629 CGATTGAGGGCCTGATACTTGGCGGTC-GCG-CTCGACTGCTCGGACAGCAAGCCGGAGA 43686 ||||| ||||||||||| ||| || ||| || | || ||| || |||| |||| || Sbjct 121 TTGTTGAGCGCCTGATACTTCGCGCTCTGCGACTTG-CT-CTCCGAGAGCAGGCCGCTGA 178 Query 43687 AACCTTTGCATGGAGCGGACAAGAACACGATATCGGGGAACTCGCCATGCGCTGCGCGCC 43746 | |||||||| || || |||| ||||||||| | ||| |||| ||| ||| Sbjct 179 ACCCTTTGCACGGCGCTGACAGGAACACGATGTGGGGCCGCTCGTGTCCCGCCGCGGCGT 238 Query 43747 GAATGTCGTCCGGTACCGCCTGCTGCCAATCGGGATCAGGGTCGCGACTGTGAAAGGCCC 43806 | |||||| ||| ||||| |||| | | || || | | ||| || || | Sbjct 239 GGATGTCGGCCGTGGTCGCCTCGCGCCAGCCCTGCGGCGGCTCACAGCCGTGGAAAGCGC 298 Query 43807 GGTACTGCTCCAGGTCGAACAGATCGAGCAGGGTGCCGGGAACGCCGGCAAGGCGCGTGA 43866 | |||||||| | |||||||| ||||||| |||||||| |||||||| |||||| || Sbjct 299 GATACTGCTCGCGATCGAACAGGTCGAGCACCGTGCCGGGCACGCCGGCGAGGCGCCCGA 358 Query 43867 AATCACGGATGGCCGCCGGATCGTTGTCGATGCCCCCGATGCAGCGGAACTTGGCATTCA 43926 | || || ||||| || |||||| ||| | ||| |||||||||||| | | ||| || Sbjct 359 AGTCGCGCATGGCGGCGGGATCGACGTCCACGCCGCCGATGCAGCGGTATTCGGCCACCA 418 Query 43927 GACTACCGACACGAGCCGATCCCTTGTTGAAGCCTTTGGCGCCGGCACCGAGCCCGCAAA 43986 | ||||| || || | || ||||||||||||||||||| | ||||||||| | Sbjct 419 TGTTGCCGACCCGCGCAGTGCCGGCGTTGAAGCCTTTGGCGCCGCCGCCGAGCCCGGCGA 478 Query 43987 ACAGATGAAAGTG 43999 |||| ||||| || Sbjct 479 ACAGGTGAAAATG 491 >seq110152 Length=599 Score = 156 bits (172), Expect = 2e-33 Identities = 155/201 (77%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 44069 CATGCCGAGCGCTGCGAGGTAGGTGTCGAGGATGGCCTCTTGCTCCATCCGCTCGTCGGT 44128 |||||||||||| |||||| | ||||||| |||| | |||| ||||| ||| | Sbjct 471 CATGCCGAGCGCGCTCAGGTAGAGGCCGAGGATCTCCTCCTCCTCCCGCCGCTTGTCCTT 412 Query 44129 GTCCTGCTTGCGCAGCGAGATCACCTTCCGCAGGATCTTGGCATCGAAGCCGGTCCCCTT 44188 |||||||||||| | ||| | ||||| || | | |||| | ||| ||||||| ||||| Sbjct 411 GTCCTGCTTGCGGATCGACACGACCTTGCGGATCACCTTGACGTCGTAGCCGGTGCCCTT 352 Query 44189 TGCCTCGCCGTACACATCCTTGATGTCGTCGGCGATGGTCTTCTTTTCTTCCTCCAAGCG 44248 |||||| |||| |||||||||||||| ||| || |||||| |||||||| | ||| Sbjct 351 GGCCTCGGCGTAAACATCCTTGATGTCCTCGCTGACCTGCTTCTTGTCTTCCTCGAGGCG 292 Query 44249 TTCGATGCGGTGGATGAAGGC 44269 |||||| || | ||||||||| Sbjct 291 TTCGATCCGCTCGATGAAGGC 271 >seq88363 Length=878 Score = 143 bits (158), Expect = 1e-29 Identities = 160/211 (76%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 44069 CATGCCGAGCGC-TGCGAGGTAGGTGTCGAGGATGGCCTCTTGCTCCATCCGCTCGTCGG 44127 |||||||| || ||| |||||| || ||||| |||| | ||| |||| ||| Sbjct 295 CATGCCGATGGCCTGC-AGGTAGAGCTCCAGGATCTCCTCCTCCTCGCGGCGCTTGTCCT 353 Query 44128 TGTCCTGCTTGCGCAGCGAGATCACCTTCCGCAGGATCTTGGCATCGAAGCCGGTCCCCT 44187 |||||||||||| | || | | ||| || | ||||||| | ||| ||||||| |||| Sbjct 354 GGTCCTGCTTGCGGATGGACACGATCTTGCGGATGATCTTGACGTCGTAGCCGGTGCCCT 413 Query 44188 TTGCCTCGCCGTACACATCCTTGATGTCGTCGGCGATGGTCTTCTTTTCTTCCTCCAAGC 44247 | ||||| |||| || |||||||| ||||||| | ||||||||| || |||||||||| Sbjct 414 TGGCCTCCGCGTAGACGTCCTTGATCTCGTCGGACACGGTCTTCTTGTCCTCCTCCAAGC 473 Query 44248 GTTCGATGCGGTGGATGAAGGCCTTGAGCTG 44278 | |||||||| | |||||||||| | || || Sbjct 474 GCTCGATGCGCTCGATGAAGGCCATCAGGTG 504 >seq73728 Length=1173 Score = 109 bits (120), Expect = 2e-19 Identities = 165/235 (70%), Gaps = 0/235 (0%) Strand=Plus/Minus Query 41878 GCACCCAAATCGGCTGATTAGACAGCATGAACGTCTCGCCGGTCATGGCGAGCAGCAGTG 41937 ||||||| || || || ||||||||||| ||||||| || || |||||||| | Sbjct 955 GCACCCAGATGGGTGTGTTGGACAGCATGAAGCTCTCGCCACTCCAAGCAAGCAGCAGCG 896 Query 41938 TGGTTCCCATAACGTCGGCGATCGCAGTCGCCGCATCCGGAGGTACCGCGTTCCCGATGC 41997 | || ||||| | ||| || || | || || || || || || ||||| ||||| | Sbjct 895 TCGTGCCCATCGTGCTGGCAATGGCCGCAGCGGCGTCTGGCGGCACTGCGTTGCCGATCC 836 Query 41998 GCTCTCGCCAAGCGGAATCGGACTGGCCGTCGAGGGTGAATATCTCGTCTGGATCAACGA 42057 |||| ||||| | || || ||| || || || || ||| || || || || | Sbjct 835 GCTCGCGCCAGTCAGAGTCTGACAATCCTTCCAGTTCGAGGTGCTCTTCGGGCTCGACCA 776 Query 42058 GGCTCTGCAACGCCGCTAACTCGAGAGTGGTGAACGGACGATGCCACGTGCCATC 42112 ||||||||||||| || ||||| || || | |||||| || ||||| || || || Sbjct 775 GGCTCTGCAACGCGGCCAACTCCAGCGTCGAGAACGGCCGGTGCCATGTCCCGTC 721 >seq65096 Length=1447 Score = 96.9 bits (106), Expect = 1e-15 Identities = 151/211 (72%), Gaps = 4/211 (2%) Strand=Plus/Plus Query 44069 CATGCCGAGCGC-TGCGAGGTAGGTGTCGAGGATGGCCTCTTGCTCCATCCGCTCGTCGG 44127 ||||||||| || ||| | |||| |||||||| ||||| |||||| |||||| | | Sbjct 1067 CATGCCGAGGGCCTGC-ATGTAGAGCTCGAGGATCGCCTCCTGCTCCTGGCGCTCG-CTG 1124 Query 44128 TG-TCCTGCTTGCGCAGCGAGATCACCTTCCGCAGGATCTTGGCATCGAAGCCGGTCCCC 44186 || ||||||||||| | | ||| | | | |||| | ||| || ||||||||| ||| Sbjct 1125 TGATCCTGCTTGCGGATCCGGATGATCGTGCGCACGGCCTTCGCGTCGAAGCCGCGGCCC 1184 Query 44187 TTTGCCTCGCCGTACACATCCTTGATGTCGTCGGCGATGGTCTTCTTTTCTTCCTCCAAG 44246 || ||| || |||| |||||||||||| | |||| ||| || ||||| | | Sbjct 1185 TTCAATTCGGCGAACACCTCCTTGATGTCGCCCATGATGCCGGCCTTCTCCTCCTCGAGG 1244 Query 44247 CGTTCGATGCGGTGGATGAAGGCCTTGAGCT 44277 || || | ||| | |||||| ||| |||| Sbjct 1245 CGCTCCAGGCGCTCGATGAACTGCTTCAGCT 1275 >seq113712 Length=557 Score = 89.7 bits (98), Expect = 2e-13 Identities = 95/124 (77%), Gaps = 6/124 (5%) Strand=Plus/Minus Query 48709 TGAGCCAGGAGACGCTGGC---TGCGCATCTCGGCATCACCTTCCAGCAGGTCCAGAAAT 48765 |||||||| |||||| | |||| ||||| ||| |||||||||||| ||||||| Sbjct 376 TGAGCCAGACGACGCTCGGACATGCGA---TCGGCGTCAGCTTCCAGCAGGTGCAGAAAT 320 Query 48766 ACGAAAAGGGCGCCAACCGCGTCGGCGCCAGCAGGCTGCAGGCCATCAGCGAAGCGCTCA 48825 |||| |||||| |||||| |||||||||||| | |||||| || ||| ||||| Sbjct 319 ACGAGAAGGGCCGCAACCGGGTCGGCGCCAGCCGCCTGCAGATGATTGCCGATCTGCTCA 260 Query 48826 AGGT 48829 |||| Sbjct 259 AGGT 256 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 183318327353604