Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Castanea_20mollissima_20[genbank_20GCA_5F000763605.1_202014-10-06]
133,589 sequences; 833,240,550 total letters
Query= NC_003324.1
Length=57416
Score E
Sequences producing significant alignments: (Bits) Value
seq108347 262 1e-65
seq110152 156 2e-33
seq88363 143 1e-29
seq73728 109 2e-19
seq65096 96.9 1e-15
seq113712 89.7 2e-13
>seq108347
Length=620
Score = 262 bits (290), Expect = 1e-65
Identities = 357/493 (72%), Gaps = 4/493 (1%)
Strand=Plus/Plus
Query 43509 ATCTGATCGAGCAACTTGCGGCCACGGTTCATGATGCGCGGCACATTTTCGAAAATGATC 43568
||||||||||||| |||||||||||| | ||| ||||||||||| ||||| || | |
Sbjct 1 ATCTGATCGAGCAGCTTGCGGCCACGCGACTGGATACGCGGCACATTCTCGAAGATCAGC 60
Query 43569 AGCTTGGGAAGCTTGTCCTTGAAGGCTTCCAGCATCAGCCACACGCCGCGCAACGTCAGC 43628
|||| || || | | || || |||||| ||||||| | |||||||| ||||||
Sbjct 61 AGCTCCGGCAGATCGGAAGCAAAAGCCTCCAGCGTCAGCCAGATGCCGCGCAGGGTCAGC 120
Query 43629 CGATTGAGGGCCTGATACTTGGCGGTC-GCG-CTCGACTGCTCGGACAGCAAGCCGGAGA 43686
||||| ||||||||||| ||| || ||| || | || ||| || |||| |||| ||
Sbjct 121 TTGTTGAGCGCCTGATACTTCGCGCTCTGCGACTTG-CT-CTCCGAGAGCAGGCCGCTGA 178
Query 43687 AACCTTTGCATGGAGCGGACAAGAACACGATATCGGGGAACTCGCCATGCGCTGCGCGCC 43746
| |||||||| || || |||| ||||||||| | ||| |||| ||| |||
Sbjct 179 ACCCTTTGCACGGCGCTGACAGGAACACGATGTGGGGCCGCTCGTGTCCCGCCGCGGCGT 238
Query 43747 GAATGTCGTCCGGTACCGCCTGCTGCCAATCGGGATCAGGGTCGCGACTGTGAAAGGCCC 43806
| |||||| ||| ||||| |||| | | || || | | ||| || || |
Sbjct 239 GGATGTCGGCCGTGGTCGCCTCGCGCCAGCCCTGCGGCGGCTCACAGCCGTGGAAAGCGC 298
Query 43807 GGTACTGCTCCAGGTCGAACAGATCGAGCAGGGTGCCGGGAACGCCGGCAAGGCGCGTGA 43866
| |||||||| | |||||||| ||||||| |||||||| |||||||| |||||| ||
Sbjct 299 GATACTGCTCGCGATCGAACAGGTCGAGCACCGTGCCGGGCACGCCGGCGAGGCGCCCGA 358
Query 43867 AATCACGGATGGCCGCCGGATCGTTGTCGATGCCCCCGATGCAGCGGAACTTGGCATTCA 43926
| || || ||||| || |||||| ||| | ||| |||||||||||| | | ||| ||
Sbjct 359 AGTCGCGCATGGCGGCGGGATCGACGTCCACGCCGCCGATGCAGCGGTATTCGGCCACCA 418
Query 43927 GACTACCGACACGAGCCGATCCCTTGTTGAAGCCTTTGGCGCCGGCACCGAGCCCGCAAA 43986
| ||||| || || | || ||||||||||||||||||| | ||||||||| |
Sbjct 419 TGTTGCCGACCCGCGCAGTGCCGGCGTTGAAGCCTTTGGCGCCGCCGCCGAGCCCGGCGA 478
Query 43987 ACAGATGAAAGTG 43999
|||| ||||| ||
Sbjct 479 ACAGGTGAAAATG 491
>seq110152
Length=599
Score = 156 bits (172), Expect = 2e-33
Identities = 155/201 (77%), Gaps = 0/201 (0%)
Strand=Plus/Minus
Query 44069 CATGCCGAGCGCTGCGAGGTAGGTGTCGAGGATGGCCTCTTGCTCCATCCGCTCGTCGGT 44128
|||||||||||| |||||| | ||||||| |||| | |||| ||||| ||| |
Sbjct 471 CATGCCGAGCGCGCTCAGGTAGAGGCCGAGGATCTCCTCCTCCTCCCGCCGCTTGTCCTT 412
Query 44129 GTCCTGCTTGCGCAGCGAGATCACCTTCCGCAGGATCTTGGCATCGAAGCCGGTCCCCTT 44188
|||||||||||| | ||| | ||||| || | | |||| | ||| ||||||| |||||
Sbjct 411 GTCCTGCTTGCGGATCGACACGACCTTGCGGATCACCTTGACGTCGTAGCCGGTGCCCTT 352
Query 44189 TGCCTCGCCGTACACATCCTTGATGTCGTCGGCGATGGTCTTCTTTTCTTCCTCCAAGCG 44248
|||||| |||| |||||||||||||| ||| || |||||| |||||||| | |||
Sbjct 351 GGCCTCGGCGTAAACATCCTTGATGTCCTCGCTGACCTGCTTCTTGTCTTCCTCGAGGCG 292
Query 44249 TTCGATGCGGTGGATGAAGGC 44269
|||||| || | |||||||||
Sbjct 291 TTCGATCCGCTCGATGAAGGC 271
>seq88363
Length=878
Score = 143 bits (158), Expect = 1e-29
Identities = 160/211 (76%), Gaps = 2/211 (1%)
Strand=Plus/Plus
Query 44069 CATGCCGAGCGC-TGCGAGGTAGGTGTCGAGGATGGCCTCTTGCTCCATCCGCTCGTCGG 44127
|||||||| || ||| |||||| || ||||| |||| | ||| |||| |||
Sbjct 295 CATGCCGATGGCCTGC-AGGTAGAGCTCCAGGATCTCCTCCTCCTCGCGGCGCTTGTCCT 353
Query 44128 TGTCCTGCTTGCGCAGCGAGATCACCTTCCGCAGGATCTTGGCATCGAAGCCGGTCCCCT 44187
|||||||||||| | || | | ||| || | ||||||| | ||| ||||||| ||||
Sbjct 354 GGTCCTGCTTGCGGATGGACACGATCTTGCGGATGATCTTGACGTCGTAGCCGGTGCCCT 413
Query 44188 TTGCCTCGCCGTACACATCCTTGATGTCGTCGGCGATGGTCTTCTTTTCTTCCTCCAAGC 44247
| ||||| |||| || |||||||| ||||||| | ||||||||| || ||||||||||
Sbjct 414 TGGCCTCCGCGTAGACGTCCTTGATCTCGTCGGACACGGTCTTCTTGTCCTCCTCCAAGC 473
Query 44248 GTTCGATGCGGTGGATGAAGGCCTTGAGCTG 44278
| |||||||| | |||||||||| | || ||
Sbjct 474 GCTCGATGCGCTCGATGAAGGCCATCAGGTG 504
>seq73728
Length=1173
Score = 109 bits (120), Expect = 2e-19
Identities = 165/235 (70%), Gaps = 0/235 (0%)
Strand=Plus/Minus
Query 41878 GCACCCAAATCGGCTGATTAGACAGCATGAACGTCTCGCCGGTCATGGCGAGCAGCAGTG 41937
||||||| || || || ||||||||||| ||||||| || || |||||||| |
Sbjct 955 GCACCCAGATGGGTGTGTTGGACAGCATGAAGCTCTCGCCACTCCAAGCAAGCAGCAGCG 896
Query 41938 TGGTTCCCATAACGTCGGCGATCGCAGTCGCCGCATCCGGAGGTACCGCGTTCCCGATGC 41997
| || ||||| | ||| || || | || || || || || || ||||| ||||| |
Sbjct 895 TCGTGCCCATCGTGCTGGCAATGGCCGCAGCGGCGTCTGGCGGCACTGCGTTGCCGATCC 836
Query 41998 GCTCTCGCCAAGCGGAATCGGACTGGCCGTCGAGGGTGAATATCTCGTCTGGATCAACGA 42057
|||| ||||| | || || ||| || || || || ||| || || || || |
Sbjct 835 GCTCGCGCCAGTCAGAGTCTGACAATCCTTCCAGTTCGAGGTGCTCTTCGGGCTCGACCA 776
Query 42058 GGCTCTGCAACGCCGCTAACTCGAGAGTGGTGAACGGACGATGCCACGTGCCATC 42112
||||||||||||| || ||||| || || | |||||| || ||||| || || ||
Sbjct 775 GGCTCTGCAACGCGGCCAACTCCAGCGTCGAGAACGGCCGGTGCCATGTCCCGTC 721
>seq65096
Length=1447
Score = 96.9 bits (106), Expect = 1e-15
Identities = 151/211 (72%), Gaps = 4/211 (2%)
Strand=Plus/Plus
Query 44069 CATGCCGAGCGC-TGCGAGGTAGGTGTCGAGGATGGCCTCTTGCTCCATCCGCTCGTCGG 44127
||||||||| || ||| | |||| |||||||| ||||| |||||| |||||| | |
Sbjct 1067 CATGCCGAGGGCCTGC-ATGTAGAGCTCGAGGATCGCCTCCTGCTCCTGGCGCTCG-CTG 1124
Query 44128 TG-TCCTGCTTGCGCAGCGAGATCACCTTCCGCAGGATCTTGGCATCGAAGCCGGTCCCC 44186
|| ||||||||||| | | ||| | | | |||| | ||| || ||||||||| |||
Sbjct 1125 TGATCCTGCTTGCGGATCCGGATGATCGTGCGCACGGCCTTCGCGTCGAAGCCGCGGCCC 1184
Query 44187 TTTGCCTCGCCGTACACATCCTTGATGTCGTCGGCGATGGTCTTCTTTTCTTCCTCCAAG 44246
|| ||| || |||| |||||||||||| | |||| ||| || ||||| | |
Sbjct 1185 TTCAATTCGGCGAACACCTCCTTGATGTCGCCCATGATGCCGGCCTTCTCCTCCTCGAGG 1244
Query 44247 CGTTCGATGCGGTGGATGAAGGCCTTGAGCT 44277
|| || | ||| | |||||| ||| ||||
Sbjct 1245 CGCTCCAGGCGCTCGATGAACTGCTTCAGCT 1275
>seq113712
Length=557
Score = 89.7 bits (98), Expect = 2e-13
Identities = 95/124 (77%), Gaps = 6/124 (5%)
Strand=Plus/Minus
Query 48709 TGAGCCAGGAGACGCTGGC---TGCGCATCTCGGCATCACCTTCCAGCAGGTCCAGAAAT 48765
|||||||| |||||| | |||| ||||| ||| |||||||||||| |||||||
Sbjct 376 TGAGCCAGACGACGCTCGGACATGCGA---TCGGCGTCAGCTTCCAGCAGGTGCAGAAAT 320
Query 48766 ACGAAAAGGGCGCCAACCGCGTCGGCGCCAGCAGGCTGCAGGCCATCAGCGAAGCGCTCA 48825
|||| |||||| |||||| |||||||||||| | |||||| || ||| |||||
Sbjct 319 ACGAGAAGGGCCGCAACCGGGTCGGCGCCAGCCGCCTGCAGATGATTGCCGATCTGCTCA 260
Query 48826 AGGT 48829
||||
Sbjct 259 AGGT 256
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 183318327353604
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |