Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Castanea_20mollissima_20[genbank_20GCA_5F000763605.1_202014-10-06] 133,589 sequences; 833,240,550 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq78534 116 3e-21 >seq78534 Length=1057 Score = 116 bits (128), Expect = 3e-21 Identities = 214/311 (69%), Gaps = 2/311 (1%) Strand=Plus/Minus Query 37966 AATCCTGGACATTCGCATGGACACATTAGAGACCATTCTTCATCTTTTTCTACGCGTTCC 38025 || || |||||||| |||||||| || | ||| ||| ||| |||||||| || | | Sbjct 384 AAACCAGGACATTCATTGGGACACATCAGTGTCCAGTCTGCATTCTTTTCTACTCGCTTC 325 Query 38026 ATAAATAAATCAGGTACCCATAATGCAGTA-AATAAATCTTTGGTTCTATATTCTTCGTT 38084 || |||| ||||| | ||| | || ||| || | |||| ||| ||| |||||| || Sbjct 324 ATGAATAGGTCAGGAATCCAGAGAGC-GTAGAAGAGATCTCTGGCTCTGACTTCTTCTTT 266 Query 38085 CCCTACATTCTTTCTTAAGCTTAGAAAATCGAATATATCAGCGTGCCATGGTTCTATATA 38144 || |||||||| ||| | || | ||||||| ||||||||||||||| || | || Sbjct 265 GCCGTGGTTCTTTCTCAAGTTGAGCCACTCGAATACATCAGCGTGCCATGGCTCAAGGTA 206 Query 38145 AATCGACATTGCTCCTGGTCTTTTATCACCTCCCTGATTAATATATCTAACTGTGTTATT 38204 ||| | | || |||||||| || | || || |||| | || | | | ||||| | Sbjct 205 AATGGCGAAGGCACCTGGTCTCTTGTTGCCGCCTTGATCGACGTACCGAGCAGTGTTGTC 146 Query 38205 ATATATTCTTAACATAGGTACTATACCATTAGATTTGCCGTTTATACCGGATATATAAGT 38264 | | | || | |||||| | ||| || || |||||||| |||| | || || | Sbjct 145 AAAGACTCGCAGCATAGGCGTCAGACCGTTCGAAGTGCCGTTTGTACCCGCGATGTATGA 86 Query 38265 ACCCTTAGCTC 38275 ||| | |||| Sbjct 85 ACCTGTGGCTC 75 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 467742428006160